mRNA_L-elsbetiae_contig635.15006.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig635.15006.1
Unique NamemRNA_L-elsbetiae_contig635.15006.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig635.15006.1 vs. uniprot
Match: A0A6H5L4W1_9PHAE (PARP-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4W1_9PHAE)

HSP 1 Score: 175 bits (443), Expect = 8.850e-52
Identity = 91/161 (56.52%), Postives = 110/161 (68.32%), Query Frame = 2 
Query:   44 PAQVLNPVVDPVKMMSTTAAPPTLMHR-----SSR-SLDEVAATCLAKQASVNPCSNPWRTLTPPDFVIGYARGVGRVRCSTCLSKITQGELQLGAFYMHGQRSVTLLRWHHQRCIDAPDCLTNPFDLCGTEDLAAEDLEAVCKWLGYGIEEAVKDRTWTA 508
            PAQ L PVV+P  +M++ AA      +     SSR SLD+ A     K        NPW+ L P DFVIGYARG+GRVRCS+C  KI+ G+LQLGAFYMH  R  TLLRWHHQ C+DAP+CLT+P DLCG EDL+ ED++ VC+WL +G    VKDRTWTA
Sbjct:    9 PAQHLRPVVEPATIMASPAAAAAPAEQGKHCSSSRYSLDDQARLLQHKHHRNRLFLNPWKELAPEDFVIGYARGLGRVRCSSCGCKISAGQLQLGAFYMHEDR-FTLLRWHHQSCVDAPECLTSPMDLCGIEDLSPEDVDEVCRWLAHGRSGPVKDRTWTA 168
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig635.15006.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5L4W1_9PHAE8.850e-5256.52PARP-type domain-containing protein n=1 Tax=Ectoca... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig635contigL-elsbetiae_contig635:9662..12624 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-01_004740.2
Exons2
Model size752
Cds size429
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig635.15006.1prot_L-elsbetiae_contig635.15006.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig635 9744..12383 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816700.861108-UTR-L-elsbetiae_contig635:9661..97431622816700.861108-UTR-L-elsbetiae_contig635:9661..9743Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig635 9662..9743 +
1691683750.2848668-UTR-L-elsbetiae_contig635:9661..97431691683750.2848668-UTR-L-elsbetiae_contig635:9661..9743Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig635 9662..9743 +
1622816700.8989334-UTR-L-elsbetiae_contig635:12383..126241622816700.8989334-UTR-L-elsbetiae_contig635:12383..12624Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig635 12384..12624 +
1691683750.320212-UTR-L-elsbetiae_contig635:12383..126241691683750.320212-UTR-L-elsbetiae_contig635:12383..12624Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig635 12384..12624 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816700.8732674-CDS-L-elsbetiae_contig635:9743..99651622816700.8732674-CDS-L-elsbetiae_contig635:9743..9965Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig635 9744..9965 +
1691683750.2964854-CDS-L-elsbetiae_contig635:9743..99651691683750.2964854-CDS-L-elsbetiae_contig635:9743..9965Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig635 9744..9965 +
1622816700.8867395-CDS-L-elsbetiae_contig635:12176..123831622816700.8867395-CDS-L-elsbetiae_contig635:12176..12383Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig635 12177..12383 +
1691683750.3096464-CDS-L-elsbetiae_contig635:12176..123831691683750.3096464-CDS-L-elsbetiae_contig635:12176..12383Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig635 12177..12383 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig635.15006.1

>prot_L-elsbetiae_contig635.15006.1 ID=prot_L-elsbetiae_contig635.15006.1|Name=mRNA_L-elsbetiae_contig635.15006.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=143bp
MMSTTAAPPTLMHRSSRSLDEVAATCLAKQASVNPCSNPWRTLTPPDFVI
GYARGVGRVRCSTCLSKITQGELQLGAFYMHGQRSVTLLRWHHQRCIDAP
DCLTNPFDLCGTEDLAAEDLEAVCKWLGYGIEEAVKDRTWTA*
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mRNA from alignment at L-elsbetiae_contig635:9662..12624+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig635.15006.1 ID=mRNA_L-elsbetiae_contig635.15006.1|Name=mRNA_L-elsbetiae_contig635.15006.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2963bp|location=Sequence derived from alignment at L-elsbetiae_contig635:9662..12624+ (Laminarionema elsbetiae ELsaHSoW15)
TATAGGTAGCGCTTGTCGTGCGTGTGTGTTCCTTACAACAGCACCTGCGC
AGGTCCTCAACCCCGTCGTCGATCCCGTCAAGATGATGAGCACCACGGCA
GCGCCACCGACCCTCATGCACCGCAGCTCGCGTTCATTGGATGAGGTCGC
AGCGACTTGCTTGGCGAAGCAAGCATCCGTCAACCCTTGCTCCAATCCCT
GGAGAACCCTCACCCCCCCGGACTTCGTGATCGGCTACGCGAGGGGCGTG
GGCAGAGTCAGATGCAGCACCTGCCTCTCCAAGATCACCCAGGGAGAGCT
CCAGGTGAGGGAAGGGAGTAGAGCTCGCTGCAGCGGAAGTACACGCGCTT
GTAGATGCGCTTGTACGTTTTCTACGCCTCTTTGCGTCCGTGGTATTTGC
AGTTTCCACCGCACATGCATCCCAAACAGCCCACCAGGTTCAACTAGACC
CGCCCCCGGACACGATACACGAGACATCGACGAGCATCTGCTACGCCTGT
GTACGCAAGTCATCCTTGGTATTCATTGGCGGTGTCGTAGGCGACCTCGC
TGGGGTCTTTTTATTCTCTTTTATCGACCCGTTGGGCGTCACTTTAGTGA
CCTCTGGTTCTTCCAAAGGTCGGTACGCAAAAGGTTAGATTTGTATCTAG
ATGTTCGTCTCTCCCTGCGCTCCCTTGCGCCAAGCAGGCGGACCATTGTT
TCGTATCCAATTTATTCTCGCGTGTGAGGCTGCTATATGACGTATGTACC
TGATGTGGCTGTAAGGACGGTCAGGCACGTGCGGTTCCGCAACACACCAG
GCCAAACAAACCTAGCAGTTCCTTGCAAGCAGGCCGACCGATTCTGTGGG
CCGTGGCCACATATGTCAGTCTGGAACGTAACGACAGGAAACCCCACCTG
CCGTTTTCGTGGTTTCACCATATTTTACATGCCGCCTTTTAGATGGTTAA
CCCCAGGGGTATGTGTGTGTGTGCCAGAACGTAGTGATTGTCGAGGCCCC
GTTACTCAGCGGTGTAAGTGTGGCCATCGGCGATCTGCTACCCTGCCTGC
TACAGAACATTCCAATTGGAACATTGCAACATATGCACATGTGTCCCCTT
CTGCTGATCTAGACCACCACATATATAACCGCTGATGTGTAGACCAATTG
TTTTGTTGCCTCGACTTTCCAAGCTTGAGACAGGAGTGCATGATAGGATC
CGATCGACCCTTTGGATACGTATGCATCTATGTACGGGCAAGGAGGGCGA
ACAACTAACGTCCTTCGCGCAGCCTGCGCGGTGCAGTCGGTGGTGCCTCA
CATATAGGCGTTGAAGTAGATACACGCGGCGGCCTTCTGAAAACTAATGT
ACCACGGGAGCGATACACTCAAAACCTGTGGCACGGCATGGACCCTCTGT
GCAACTTGAAACTTCGCCCCACACAGAAAGGCGAACACTGACGCTTTCGC
GCGCGTAGGCTGAAGCGTCAACAGCGTGCGTACCTACATCGTTACGCTCA
ACAGACCGACAGCTACGGCTGTCAGCGTTTGATCCTGTTGGTGCTTGCTT
CCTTCTTTAGGTCGCTTTGCGTATCTCATATGTACGACGCAATTACACGC
ACACACATATATATGTACATATGCAATCACAACCAGTAGATAACAGTTGA
TCAGAAATGGAAATCCAACCCACATTAGCGACGGGATTCGGTGGGATTCA
ACCGGTGTTCCATGTACGTGACGGTATATTATTGGTCCGGTCGAGAGGAC
AAAAACACCTGAATTTTCCCCAAGACATCAACACCTCCCCTATTGCGCAA
CTCTGCCAGGCCGAACAGCAGTTACATTTCGAGGAGCCTACTACTGTCGT
GCTGTGGTGCTGTCAGTCATCTTCCTCCATAATTGTAGTAATCGTAGGAA
CAGATAAGTGTAGCTGCCTCTAAGTCTAGATGGGAAGTTACTGCTGTCTG
AACACCTCTATCCTAGATAGAAGTATTTACCTCAAGAAAAGGTTCCTGTT
GAAAGAAGACCCACTTTATTCGGGAAACCACCACCACCACCAGCATTGCA
TGAAGAGTAGGGCAGCAGCAGCTGCTGCCGCTTTCCCTGAAGTGACGGCA
TACATTCAAACTAGCCCGCCTGTCCCCTTTCTAAACGCTGTCGCGTGAGC
CGGATCAAAAGTGGTGGGGGTCGCGTGAGCCAGATACGCGGCACGTTGAT
TAATCCGTTTCAAGGTGTTCTCCTGTGTATCGACGACCCATGTCGTACGT
AACCTTCGTTTGGTATGTTCACATGTTACTGTGTACAACAATGTGATGTT
TCGTCTCCGGAAGTATGCATGTATGTATGTACACACAGCATGAATGTGAG
GAAGAAGAAAACAAAAAACAAAAAACAAAAAAAACGCAGCAAAAAACAGC
ACCTTCCCGAAAACTGACTGCTTGCCGCACACCGCCCGCCGTGTTTCGCC
CTGGATTTTTTTCGTTCGGCCGCCGCCCCCGCCCCCGCCCGCCCGCAACT
TCCGTCACGAAACAGCTCGGTGCGTTTTACATGCACGGCCAGCGCTCCGT
GACGCTGCTCAGGTGGCACCACCAGCGCTGCATCGACGCGCCCGACTGCC
TCACGAACCCCTTCGACCTCTGCGGCACGGAAGACCTGGCCGCGGAGGAT
CTCGAGGCCGTGTGCAAGTGGCTGGGGTACGGGATCGAGGAAGCCGTCAA
GGACCGCACGTGGACGGCATGATTTCGATTACATCATATTCTCGAATCGA
TTGGCTCTGCGTGACGCGCCGAGGCCTCTCTTTTGCATGCTGGTGCGATC
GGTGGGTGTAGGAAGCGACGAGAAACAAAATCCTTCTTCTCTGTTCGGTT
GTTGGGGAAGAGGGTCGAGCATCTTTCGACAGACGGCGGTGGGGGAGGTT
CATACCCTTTATATACGAGGGGTGAACCTCCACCCACGTTCCTCCCCCCC
CCCCCCCATTTTT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig635:9662..12624+

>mRNA_L-elsbetiae_contig635.15006.1 ID=mRNA_L-elsbetiae_contig635.15006.1|Name=mRNA_L-elsbetiae_contig635.15006.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=858bp|location=Sequence derived from alignment at L-elsbetiae_contig635:9662..12624+ (Laminarionema elsbetiae ELsaHSoW15)
ATGATGAGCACCACGGCAGCGCCACCGACCCTCATGCACCGCAGCTCGCG
TTCATTGGATGAGGTCGCAGCGACTTGCTTGGCGAAGCAAGCATCCGTCA
ACCCTTGCTCCAATCCCTGGAGAACCCTCACCCCCCCGGACTTCGTGATC
GGCTACGCGAGGGGCGTGGGCAGAGTCAGATGCAGCACCTGCCTCTCCAA
GATCACCCAGGGAGAGCTCCAGATGATGAGCACCACGGCAGCGCCACCGA
CCCTCATGCACCGCAGCTCGCGTTCATTGGATGAGGTCGCAGCGACTTGC
TTGGCGAAGCAAGCATCCGTCAACCCTTGCTCCAATCCCTGGAGAACCCT
CACCCCCCCGGACTTCGTGATCGGCTACGCGAGGGGCGTGGGCAGAGTCA
GATGCAGCACCTGCCTCTCCAAGATCACCCAGGGAGAGCTCCAGCTCGGT
GCGTTTTACATGCACGGCCAGCGCTCCGTGACGCTGCTCAGGTGGCACCA
CCAGCGCTGCATCGACGCGCCCGACTGCCTCACGAACCCCTTCGACCTCT
GCGGCACGGAAGACCTGGCCGCGGAGGATCTCGAGGCCGTGTGCAAGTGG
CTGGGGTACGGGATCGAGGAAGCCGTCAAGGACCGCACGTGGACGGCATG
ACTCGGTGCGTTTTACATGCACGGCCAGCGCTCCGTGACGCTGCTCAGGT
GGCACCACCAGCGCTGCATCGACGCGCCCGACTGCCTCACGAACCCCTTC
GACCTCTGCGGCACGGAAGACCTGGCCGCGGAGGATCTCGAGGCCGTGTG
CAAGTGGCTGGGGTACGGGATCGAGGAAGCCGTCAAGGACCGCACGTGGA
CGGCATGA
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