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Homology
BLAST of mRNA_L-elsbetiae_contig6345.15003.1 vs. uniprot
Match: D7G3N4_ECTSI (Rhomboid domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G3N4_ECTSI) HSP 1 Score: 257 bits (657), Expect = 2.150e-78 Identity = 140/190 (73.68%), Postives = 150/190 (78.95%), Query Frame = 1
Query: 1 CLTVAFSSLFSWGSAVGEVMALVVGFNALQALKCCCCPDSVPAEHKFCVNLLKAYGALSGILLVSDLASFGAILGQSCFVAWSGVSETSRELGLLLLVAAAAVHGLAVAACVEGVVIFRDGQVFLSSIGLKQVVSAYSLNADAEMMMTATSGPATAXXXXXXXXXXXXASAAGITSGRLYRGGGRALGTA 570
CLTVA S +FSWGS VGEVMALVVGFNALQALKCCCCPDSVPAEH+FCVNLLKAYGALS ILLVSDL SFGAILGQSCFV WSGVS+TSR GL LL+ AAAVHGLAVAAC+EG VIFRDGQ FLS+IGLKQVV+AYS A+ SG T +AA ITSGRLYRGGGR+ GTA
Sbjct: 453 CLTVALSMVFSWGSTVGEVMALVVGFNALQALKCCCCPDSVPAEHRFCVNLLKAYGALSAILLVSDLLSFGAILGQSCFVTWSGVSDTSRHYGLALLLVAAAVHGLAVAACIEGGVIFRDGQTFLSTIGLKQVVTAYSFGAN--------SGGNT--------------TAAAITSGRLYRGGGRSTGTA 620
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Taxonomic scope | Eukaryota |
| Seed ortholog score | 258.1 |
| Seed ortholog evalue | 3.9e-66 |
| Seed eggNOG ortholog | 2880.D7G3N4 |
| KEGG ko | ko:K09651 |
| Hectar predicted targeting category | signal peptide |
| EggNOG free text desc. | serine-type endopeptidase activity |
| EggNOG OGs | KOG2632@1,KOG2632@2759 |
| COG Functional cat. | P |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
| BRITE | ko00000,ko01000,ko01002 |
| Exons | 4 |
| Model size | 684 |
| Cds size | 684 |
| Stop | 0 |
| Start | 0 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622816700.7157848-CDS-L-elsbetiae_contig6345:7649..7967 | 1622816700.7157848-CDS-L-elsbetiae_contig6345:7649..7967 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig6345 7650..7967 - |
| 1691683750.2110813-CDS-L-elsbetiae_contig6345:7649..7967 | 1691683750.2110813-CDS-L-elsbetiae_contig6345:7649..7967 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig6345 7650..7967 - |
| 1622816700.732816-CDS-L-elsbetiae_contig6345:9294..9432 | 1622816700.732816-CDS-L-elsbetiae_contig6345:9294..9432 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig6345 9295..9432 - |
| 1691683750.2233827-CDS-L-elsbetiae_contig6345:9294..9432 | 1691683750.2233827-CDS-L-elsbetiae_contig6345:9294..9432 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig6345 9295..9432 - |
| 1622816700.7473536-CDS-L-elsbetiae_contig6345:10440..10549 | 1622816700.7473536-CDS-L-elsbetiae_contig6345:10440..10549 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig6345 10441..10549 - |
| 1691683750.2353609-CDS-L-elsbetiae_contig6345:10440..10549 | 1691683750.2353609-CDS-L-elsbetiae_contig6345:10440..10549 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig6345 10441..10549 - |
| 1622816700.7581365-CDS-L-elsbetiae_contig6345:11006..11125 | 1622816700.7581365-CDS-L-elsbetiae_contig6345:11006..11125 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig6345 11007..11125 - |
| 1691683750.2456949-CDS-L-elsbetiae_contig6345:11006..11125 | 1691683750.2456949-CDS-L-elsbetiae_contig6345:11006..11125 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig6345 11007..11125 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig6345.15003.1 >prot_L-elsbetiae_contig6345.15003.1 ID=prot_L-elsbetiae_contig6345.15003.1|Name=mRNA_L-elsbetiae_contig6345.15003.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=228bp
CLTVAFSSLFSWGSAVGEVMALVVGFNALQALKCCCCPDSVPAEHKFCVN
LLKAYGALSGILLVSDLASFGAILGQSCFVAWSGVSETSRELGLLLLVAA
AAVHGLAVAACVEGVVIFRDGQVFLSSIGLKQVVSAYSLNADAEMMMTAT
SGPATAAGGGSAASTNSYASAAGITSGRLYRGGGRALGTAASNRAAASSR
GGGGARTAGRGAEAGALLLGRGGGGEGG back to topmRNA from alignment at L-elsbetiae_contig6345:7650..11125- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_L-elsbetiae_contig6345.15003.1 ID=mRNA_L-elsbetiae_contig6345.15003.1|Name=mRNA_L-elsbetiae_contig6345.15003.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3476bp|location=Sequence derived from alignment at L-elsbetiae_contig6345:7650..11125- (Laminarionema elsbetiae ELsaHSoW15)
TGCCTGACGGTGGCGTTTTCCTCTCTGTTTTCCTGGGGGTCGGCGGTGGG
AGAGGTCATGGCGCTAGTTGTCGGCTTCAACGCCCTCCAGGCGCTCAAGT
GCTGCTGCTGCCCTGACAGGTGTCTGCAATGTAGTATGTACATACAAGAA
GTCTAAATCTACACACACACACACACACGTTGCGATTTATCGCAGAGCTT
ATTCCCCACTTTTTTTTGTTCCCTTTGCCGCCTTTGATTTGACTCATATT
GTTGCGCCGACTGACTCTCTCTGGCGCCGCACGCATGTGTTTTCTCTTCA
GCGGCGTCGAGTGCGCCCTGTGTTTGTGACCTCGGAGCCCCGTGGGTGGT
TTTTGGACTATTTTATTTTATTTTTTGTTTCCTCCCGTTATTGGCTTATT
CGTCGTCTGCCCCACTGGCCCTCATCCTCAACTACGACTAGCTAGACGAC
CCAACCGGGTTTACTCAGGAGGGGGGGGGGGGCTCCTGCGGTGCCTGGCT
GATTTGTTTTTATCTTTTAGTAGAGAGCTAAACTGTGAGAACAACAATAT
ATGCATGCCGTTTACTGCTGCCGCAGCGTCCCCGCAGAGCACAAGTTCTG
CGTGAACCTCCTCAAGGCCTACGGTGCTCTCAGCGGGATTCTGCTCGTCA
GCGACCTGGCCTCCTTCGGCGCTATTCTGGGCCAGGTGCGCGGGGGGGGG
GGGGGGGGGGGGTTCCGTGAGGGAGAAATATGTCACTCACAAAAACAACA
TAGAAAGAAGGGGTGGGGCAATGTACCATACCATCCGGCGGCACACTTTG
TTTTAGGTGGGAAAGGACGCCCCGGGACGCTCTCACAATGAATTGATTTG
TTTTGCTGCGTTCTGTAGATGGGCACACAGCAGTTAGTGCTTTGTTAAGG
CGGCCCTATTATTGCAGTCACGCTTATTGCTGTCGGCACACACTATAAAT
CGGTGAAGGGTTTTTGTTTTTTAAGTCCTGCGCAGCAGCCCCATGCGGGT
GTGTCGAGAGGTGTATACTACCTATGTATCTCATGTTTTCAGCCGGCACT
TCAGACTGCTGCTGTATTGCTTTACCTTCTTTTTTGTTGCCTGCCACCTC
GGATGCCTTTCGACGCTACACAAGATAACACCCCCCCCCCCTGGATCGAC
GATGTTCAGCGCTCGATTACTCCGTGACGAAGACGATGGTGCCAATACCA
AATGACACGTTTTCGGACAGCTAAATATCGCCGAGATTTTGTTTTTCCGA
CGCCACCCTTTTTCGGCACTGAAACTCTTCTTGTTGGGGAGGAGTCGAGC
TTTGAAAATCGGTCAAGGGGGTGTGTTATCTTGCGTGTCGTATACGATAC
AAGAGTGCTCCAAACCGTCGTGGTCCTGCAGCCCGACGTGGTCCTGCAGC
CCGAGTGTCGTGGCCTCCCTCCTCCTCGTGCATGATTGGCTGGCACAACG
GACAGGGTTGAATGTTTTGGCGTTTGTATTTTTTGCGGCTCGGATTTGGT
TCTCTCGTGTCCGCCGCCGTACTGAACGAGGGGTCCTCCACACGCGCGCT
CTGTCTGTCTGCCTGTCTTATCTGTCTGTCTGTGTACGCCGCCGCACTAA
ACAAGGAAGCCTCCACACGCACGCTCTGCCTGTCTGTGTGTCTGTCTGTG
TGTCTGTCTGTCTACGCTCCCCCCCCCTCCCCTTGCCCCGCAGTCGTGCT
TCGTCGCGTGGTCGGGGGTGTCTGAGACCTCGAGGGAGTTGGGCTTGCTC
CTGCTTGTCGCCGCTGCGGCGGTGCACGGCCTGGCGGTGGCGGCGTGCGT
GGAAGGGGTGGTCATCTTTCGCGACGGACAGGTGGGTGGAGAAAAAAAAA
AAAAAAAACGGTGGATCCTAAAGAGGCAAAAGGAGAGCGATTCCTTTCTG
CATATAATTATTTATAAAAAAAAGAAAACAACANNNNNNNNNNGGGGTGC
AGGGCGGGGAGGGGGAGGCGGGCGGGAAAGGGGAGAGAATTAGGCGGGAA
GAAAAGAGGAATAGAAAAAAAAAAAAAAAAAAACGGTGGATCCTAAAGAG
TCAAAATCTGATCGATTCCTTTCCATATATATGTATTTATGCGACAGAGC
GACCGACGGCTGCGTGAATCAGGAGTGCGGGAGAGGCTTTGTGTTTAGCT
GAGTATTCAATAAATACAGATGTACTTAGCATGTACTGATCTTGTCCTTT
TTAATTAATGCATACAATTGTCAGCAGCCTGCGTCCAGTCTGTGAAAAAG
TCGTTCCGGAGGGAACTGTTGTAAGCATACTGACTCCCCCTTTTTTCCCG
TCCCAAGACATTATCACTCGCACAAAATCCGTAATCCATCGAACACAATT
CGTTGGTGAAAAAACATTTCGAACAACTCGTTTTATGTATGTGCTCGCAC
GGGCAAGCAAACAACACACAAATGCATGTGATTTGTTGCGTTCTCAATCG
GTGCTGAACGCCGTGTAGTTTTGCTTGGGAGGTGTCCGTGGTGTATTTAT
ATAGCCAGCGACGGGTGACGGTCCCTCGGACTAAAGGCGGCCTAGCTGAC
TGCCCTGGGCAGTTTACTTTTATTTTTGCGGCAGTGGTGGTAAGTATTTA
GTGCTGTTTTGTTTTTATAATTAGGAGTCTACTGTAACCTGGCCTAGAAG
GGGAAGTGGTCTTTTTTGGATTGAGAGATCGGGACGGTTTTTAATTGATG
TGCAGACAAACAACAACAACAACCAACACCAACACCAACAACAACAACAA
CAACAACAACGGGACTGTCACGGGACTGTCAACAACCCCCCGCTACTGTT
GTAACCTGGCCTAGAAGGGGAAGTGGTATTTTTCGGATTGAGAGATGGGA
ACGGTTTTTAATTATTTTGAAAATAAAACAGTTAATCAAAAATGGAACCT
AACCCACAGAGAGACAGCCGACTCCCATGAGCTTCGAACGGTATTCCATA
TAGTGACGTAATATTGGTCCAGCCCAGTAGAAAAACACCTAAAAGACGAA
AAAGTCCATCACATAAACATAATTATTGTGCAGACAAATAACAACAACGG
GACTGTCACGGGACTGTCACGGGACTGTCACCGGACTGTCACCGGACTAC
CAACAACCCACCGCTGGCCCTTCCCCGGCCGCCTCCCGCGCGTCGTCCCC
GGCCGCAGGTTTTCTTGTCTTCCATCGGGCTCAAGCAAGTGGTGTCCGCC
TACTCCCTGAACGCCGACGCAGAGATGATGATGACCGCCACCAGCGGCCC
CGCCACCGCTGCCGGCGGCGGCAGCGCCGCCTCAACAAACTCCTACGCCT
CAGCGGCCGGGATAACGTCCGGGAGGCTCTACCGGGGAGGCGGGCGAGCG
CTGGGCACGGCCGCATCGAACCGGGCAGCCGCGTCGAGCAGGGGCGGGGG
GGGTGCGCGAACCGCGGGGAGAGGGGCCGAGGCGGGGGCGCTGTTGTTGG
GGAGGGGCGGAGGGGGGGAAGGGGGT back to topCoding sequence (CDS) from alignment at L-elsbetiae_contig6345:7650..11125- >mRNA_L-elsbetiae_contig6345.15003.1 ID=mRNA_L-elsbetiae_contig6345.15003.1|Name=mRNA_L-elsbetiae_contig6345.15003.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1368bp|location=Sequence derived from alignment at L-elsbetiae_contig6345:7650..11125- (Laminarionema elsbetiae ELsaHSoW15)
TGCCTGACGGTGGCGTTTTCCTCTCTGTTTTCCTGGGGGTCGGCGGTGGG
AGAGGTCATGGCGCTAGTTGTCGGCTTCAACGCCCTCCAGGCGCTCAAGT
GCTGCTGCTGCCCTGACAGTGCCTGACGGTGGCGTTTTCCTCTCTGTTTT
CCTGGGGGTCGGCGGTGGGAGAGGTCATGGCGCTAGTTGTCGGCTTCAAC
GCCCTCCAGGCGCTCAAGTGCTGCTGCTGCCCTGACAGCGTCCCCGCAGA
GCACAAGTTCTGCGTGAACCTCCTCAAGGCCTACGGTGCTCTCAGCGGGA
TTCTGCTCGTCAGCGACCTGGCCTCCTTCGGCGCTATTCTGGGCCAGCGT
CCCCGCAGAGCACAAGTTCTGCGTGAACCTCCTCAAGGCCTACGGTGCTC
TCAGCGGGATTCTGCTCGTCAGCGACCTGGCCTCCTTCGGCGCTATTCTG
GGCCAGTCGTGCTTCGTCGCGTGGTCGGGGGTGTCTGAGACCTCGAGGGA
GTTGGGCTTGCTCCTGCTTGTCGCCGCTGCGGCGGTGCACGGCCTGGCGG
TGGCGGCGTGCGTGGAAGGGGTGGTCATCTTTCGCGACGGACAGTCGTGC
TTCGTCGCGTGGTCGGGGGTGTCTGAGACCTCGAGGGAGTTGGGCTTGCT
CCTGCTTGTCGCCGCTGCGGCGGTGCACGGCCTGGCGGTGGCGGCGTGCG
TGGAAGGGGTGGTCATCTTTCGCGACGGACAGGTTTTCTTGTCTTCCATC
GGGCTCAAGCAAGTGGTGTCCGCCTACTCCCTGAACGCCGACGCAGAGAT
GATGATGACCGCCACCAGCGGCCCCGCCACCGCTGCCGGCGGCGGCAGCG
CCGCCTCAACAAACTCCTACGCCTCAGCGGCCGGGATAACGTCCGGGAGG
CTCTACCGGGGAGGCGGGCGAGCGCTGGGCACGGCCGCATCGAACCGGGC
AGCCGCGTCGAGCAGGGGCGGGGGGGGTGCGCGAACCGCGGGGAGAGGGG
CCGAGGCGGGGGCGCTGTTGTTGGGGAGGGGCGGAGGGGGGGAAGGGGGT
GTTTTCTTGTCTTCCATCGGGCTCAAGCAAGTGGTGTCCGCCTACTCCCT
GAACGCCGACGCAGAGATGATGATGACCGCCACCAGCGGCCCCGCCACCG
CTGCCGGCGGCGGCAGCGCCGCCTCAACAAACTCCTACGCCTCAGCGGCC
GGGATAACGTCCGGGAGGCTCTACCGGGGAGGCGGGCGAGCGCTGGGCAC
GGCCGCATCGAACCGGGCAGCCGCGTCGAGCAGGGGCGGGGGGGGTGCGC
GAACCGCGGGGAGAGGGGCCGAGGCGGGGGCGCTGTTGTTGGGGAGGGGC
GGAGGGGGGGAAGGGGGT back to top
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