mRNA_L-elsbetiae_contig6345.15002.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6345.15002.1
Unique NamemRNA_L-elsbetiae_contig6345.15002.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig6345.15002.1 vs. uniprot
Match: D7G3N3_ECTSI (Importin alpha-7 subunit, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3N3_ECTSI)

HSP 1 Score: 159 bits (403), Expect = 1.740e-44
Identity = 88/127 (69.29%), Postives = 99/127 (77.95%), Query Frame = 1 
Query:    1 MVELEEGNALCRREAAWVFLNMCECGHNSQASIVPGIVRNGGILAVCQNLDRDSDAGTSLLVMLSLLFTILDEAAAAAGGSASP-ELAEYVGLVEEASGFDKILALANDHDDMEIYDKAMDIISSFN 378
            MVELEEGNALC+REAAWVFLNMCEC  +   +I+P IV +G I AVC+NL  DSDA T LLVMLSLL+TILDE     GG  S   L+EY  LVEEA GFDKI+ LANDHDDMEIYDKAMDII +F+
Sbjct:    1 MVELEEGNALCKREAAWVFLNMCECSGDPGETIIPEIVGHGVIAAVCENLSSDSDAET-LLVMLSLLYTILDE-----GGLGSTLTLSEYTTLVEEAQGFDKIMGLANDHDDMEIYDKAMDIIQAFH 121
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BLAST of mRNA_L-elsbetiae_contig6345.15002.1 vs. uniprot
Match: A0A6H5KJL7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJL7_9PHAE)

HSP 1 Score: 154 bits (389), Expect = 2.710e-41
Identity = 89/154 (57.79%), Postives = 103/154 (66.88%), Query Frame = 1 
Query:    1 MVELEEGNALCRREAAWVFLNMCECGHNSQASIVPGIVRNGGILAVCQNLDRDSDAGTS---------------------------LLVMLSLLFTILDEAAAAAGGSASP-ELAEYVGLVEEASGFDKILALANDHDDMEIYDKAMDIISSFN 378
            MVELEEGNALC+REAAWVFLNMCEC  + +A+I+P IV +G I AVC+NL  DSDAG +                           LLVMLSLL+TILDE     GG  S   L+EY  LVEEA GFDKI++LANDHDDMEIYDKAMDII +F+
Sbjct:   88 MVELEEGNALCKREAAWVFLNMCECSGDPRATIIPEIVGHGVIAAVCENLSSDSDAGKASREPVDASAKRLPCTPPSTPPRNPAETLLVMLSLLYTILDE-----GGLGSTLTLSEYTTLVEEAQGFDKIISLANDHDDMEIYDKAMDIIQAFH 236
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6345.15002.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G3N3_ECTSI1.740e-4469.29Importin alpha-7 subunit, putative n=1 Tax=Ectocar... [more]
A0A6H5KJL7_9PHAE2.710e-4157.79Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6345contigL-elsbetiae_contig6345:140..2835 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionArmadillo-type fold
Ec32 orthologEc-19_001000.1
Exons3
Model size709
Cds size708
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6345.15002.1prot_L-elsbetiae_contig6345.15002.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6345 140..2835 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816700.6498444-CDS-L-elsbetiae_contig6345:139..3131622816700.6498444-CDS-L-elsbetiae_contig6345:139..313Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6345 140..313 +
1691683750.1716135-CDS-L-elsbetiae_contig6345:139..3131691683750.1716135-CDS-L-elsbetiae_contig6345:139..313Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6345 140..313 +
1622816700.6623957-CDS-L-elsbetiae_contig6345:1655..18321622816700.6623957-CDS-L-elsbetiae_contig6345:1655..1832Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6345 1656..1832 +
1691683750.1869016-CDS-L-elsbetiae_contig6345:1655..18321691683750.1869016-CDS-L-elsbetiae_contig6345:1655..1832Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6345 1656..1832 +
1622816700.67639-CDS-L-elsbetiae_contig6345:2478..28351622816700.67639-CDS-L-elsbetiae_contig6345:2478..2835Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6345 2479..2835 +
1691683750.198415-CDS-L-elsbetiae_contig6345:2478..28351691683750.198415-CDS-L-elsbetiae_contig6345:2478..2835Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6345 2479..2835 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6345.15002.1

>prot_L-elsbetiae_contig6345.15002.1 ID=prot_L-elsbetiae_contig6345.15002.1|Name=mRNA_L-elsbetiae_contig6345.15002.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=236bp
MVELEEGNALCRREAAWVFLNMCECGHNSQASIVPGIVRNGGILAVCQNL
DRDSDAGTSLLVMLSLLFTILDEAAAAAGGSASPELAEYVGLVEEASGFD
KILALANDHDDMEIYDKAMDIISSFNPRDDDDDAVAAEDGGGAASETYTM
PLDEDDAAPPDDRDDHAASRIDGDDDDDDDDEDDNDNDAMSDDCFSDDSF
HRELSGMDGPITPPQQHRPPPPPEMSATPPSSLPRR
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mRNA from alignment at L-elsbetiae_contig6345:140..2835+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6345.15002.1 ID=mRNA_L-elsbetiae_contig6345.15002.1|Name=mRNA_L-elsbetiae_contig6345.15002.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2696bp|location=Sequence derived from alignment at L-elsbetiae_contig6345:140..2835+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGTGGAGCTGGAAGAGGGTAACGCCCTCTGCCGACGGGAGGCCGCCTG
GGTTTTCCTCAACATGTGCGAGTGCGGGCACAATTCTCAGGCGTCCATCG
TCCCCGGCATCGTACGCAACGGTGGCATCTTGGCGGTCTGCCAAAACCTG
GACAGGGATTCCGATGCAGGCACGGTCGCCTCCGGACTGACATGGCGTGA
TTTGATATTTGTACATGTGCAGCTTATTTTGGAGCGAAGAGAACACGAGA
TGCGTCTCTCTCTAAACCTTGGTGGTGGGCTCTCTCGGAACCGCTTCTCG
CCAAACAGAGAGCGCTGCTGGCTTCGTTCTTGTTTTCGTTTTTGTCCTGT
GCGTTTTGTTGCGCAAACGCTCCAGAATTTGGCGTTTGTGGCGTTTGTAG
TGCGGTCTGCTGTTTGCGTGTCCGATTGCTTCGGTATGATAACAGTCATT
TTATTTTTGTTTCTCCTTTTATGTAATAACGCCCATGTTTATGGGGAAAA
AAACTTGACAACAAAAATGTTTGTCTTTTTTTATCTTTGTGGCCACTTTT
CTTCGCCACGAGCTCGGAATCAGATTTTCGCTTCTCAGGGACATTCAAAG
CTCTCCTCCTGAGGTCTACGGATCAGCTGTCCAATCTGGCACACTCCGGG
TTTGGTTGTTGGCCTCGGAGCAAGATTTTGCTAGATTTGGGCCAAAAATT
GCAAATTTTGAACATTTTGGCTGAATATTCACGCGAACACGACTTTTTGG
CCAGATCTGGGCCAGATCCAGCAAAATCTTGCTCCGAGGCCAACAATCAA
ACCCGGAGTGTGCCAGAGTGGACAGCTGATCTGTAGACCACTGGAAGAGT
GCTTCGAATGTTGTTGAGAAGCGAAAATCTGATTCCGAGCTCTTGGCGAG
GAAAAGTGGCCACAAAGGTCAAAATACACCAAGATTGTTGCTTTCAAGAT
TTGTTTCCCATAAACATGGGCCTAAGTAAATACTTAAGTATAGAAATATA
CGCTGCTGCTGTGTGTCTCTACCGATGTCGTCCGCCACAGCCCCCCACCC
CCCAACACCAACCCCAACGGTGCGTAGTACGCCCAGCTCAGCGTTGACAG
CGCACGCCGCTCGCTACCGTGTTGCGCGCGCGCGGAGCCCCTCGTGTTTA
CAGCGTTCGTCGACCAGATGAAAAGTACGTACTGGCACATTTTCTTGTTC
CTGCTGTTGGCCGGGCCCGCCCCCGCCCCCCCGCCCCCCCCCCCCCCCCC
CCCCCCCCCCCCCCCCCTCCCCCCCCCCCCCCGGGGGGGCGGCCCGGGGG
CCCCCCCCCCCGGGGGGGGCCCCCCCCCCCCCCCTCCTGTGTGACCCCGG
TTGGGTTGTCTGGCTAATCGTAGTGGAGTATGGGGGCCAGTGGGGCAGAC
GACGAATATGCCAATAATGGGAGGGGGAAAATAGAAGAAAAAAATGTTCC
CCTTTTGTCACCACGCTTATCCCAACCCTTTCCTTCCTTGCGCCGCGAAT
GGTGGTCGCCGCAGAGAGCCTGCTGGTGATGCTGTCTCTCCTGTTCACCA
TCCTCGACGAGGCGGCGGCCGCTGCCGGCGGCAGCGCCAGCCCGGAGCTC
GCGGAGTACGTGGGCCTCGTGGAAGAGGCCAGCGGCTTCGACAAGATCTT
GGCCCTCGCCAACGACCACGACGACATGGAGATCTACGACAAGGTGATTT
TTTCTCTTCGAGTTCGAATCGTCAGAGAGCAAGCAGTCTTGTCTGTCTAC
CAGCTCGCGTCCATACACAAGCCCTGGTGTGTACGGTTTTTTTCACCAGC
GGAGCAATAAACCTAGGTTGCAGTTGGAGGTAGACGCGAAAACAAGGCCT
ACGCTGGGTTTCCGGCCCTCTCGCTACGCCACGGCGCTAGGCCTAACACG
CACCCTAAACCATCCTAAACCCTAACCCGCACCCACACCCCAGGCCAGAT
TGGTGCGCCAGGTTTAGGCCTAGGTCGCTGTACGAGCTCCTGGTGTATAT
AAGATTCTACCCCAGGGCTGGTGTATCGACGCCGCGCGGTCTGTCGACCT
ACTTTGTATGCACGCCCAGCCCGCGCAAAAACATACGAAGTATATTTTTC
CTGGGGGGGGGGAGGGGTGGGGGGCACTGTTTTGCTGTAGACACACTTTA
TCTCCACTCATCTCCGAGTAGCTGAACGCCTATGCCGAAACGGAGGCCCG
CGAAAAATACTCGCACTCTTTGTTTTTTTGTGGTATACGTGTGTAAGATT
TGGGGTATATTTTCACCCGCTCCCGCCCCCTCCCCCCCCCGCACTTCCGC
GATTTCCCGTGCCCCACCATGCTTTCGGCCGTATTGTAGGCGATGGACAT
CATTTCATCTTTCAACCCACGCGACGACGACGACGACGCCGTCGCCGCGG
AAGACGGGGGGGGTGCTGCCTCAGAAACATACACGATGCCCCTCGATGAA
GATGATGCGGCGCCCCCCGACGACCGCGATGATCACGCCGCCAGTAGAAT
CGACGGCGACGACGATGACGACGATGACGACGAGGACGACAACGACAACG
ACGCCATGTCGGACGACTGTTTCTCCGACGACTCGTTCCACAGGGAGCTC
TCGGGGATGGACGGTCCCATCACGCCACCGCAGCAGCACCGCCCCCCGCC
CCCCCCGGAGATGTCGGCGACCCCTCCTTCTTCTCTTCCGCGGCGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig6345:140..2835+

>mRNA_L-elsbetiae_contig6345.15002.1 ID=mRNA_L-elsbetiae_contig6345.15002.1|Name=mRNA_L-elsbetiae_contig6345.15002.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1416bp|location=Sequence derived from alignment at L-elsbetiae_contig6345:140..2835+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGTGGAGCTGGAAGAGGGTAACGCCCTCTGCCGACGGGAGGCCGCCTG
GGTTTTCCTCAACATGTGCGAGTGCGGGCACAATTCTCAGGCGTCCATCG
TCCCCGGCATCGTACGCAACGGTGGCATCTTGGCGGTCTGCCAAAACCTG
GACAGGGATTCCGATGCAGGCACGATGGTGGAGCTGGAAGAGGGTAACGC
CCTCTGCCGACGGGAGGCCGCCTGGGTTTTCCTCAACATGTGCGAGTGCG
GGCACAATTCTCAGGCGTCCATCGTCCCCGGCATCGTACGCAACGGTGGC
ATCTTGGCGGTCTGCCAAAACCTGGACAGGGATTCCGATGCAGGCACGAG
CCTGCTGGTGATGCTGTCTCTCCTGTTCACCATCCTCGACGAGGCGGCGG
CCGCTGCCGGCGGCAGCGCCAGCCCGGAGCTCGCGGAGTACGTGGGCCTC
GTGGAAGAGGCCAGCGGCTTCGACAAGATCTTGGCCCTCGCCAACGACCA
CGACGACATGGAGATCTACGACAAGAGCCTGCTGGTGATGCTGTCTCTCC
TGTTCACCATCCTCGACGAGGCGGCGGCCGCTGCCGGCGGCAGCGCCAGC
CCGGAGCTCGCGGAGTACGTGGGCCTCGTGGAAGAGGCCAGCGGCTTCGA
CAAGATCTTGGCCCTCGCCAACGACCACGACGACATGGAGATCTACGACA
AGGCGATGGACATCATTTCATCTTTCAACCCACGCGACGACGACGACGAC
GCCGTCGCCGCGGAAGACGGGGGGGGTGCTGCCTCAGAAACATACACGAT
GCCCCTCGATGAAGATGATGCGGCGCCCCCCGACGACCGCGATGATCACG
CCGCCAGTAGAATCGACGGCGACGACGATGACGACGATGACGACGAGGAC
GACAACGACAACGACGCCATGTCGGACGACTGTTTCTCCGACGACTCGTT
CCACAGGGAGCTCTCGGGGATGGACGGTCCCATCACGCCACCGCAGCAGC
ACCGCCCCCCGCCCCCCCCGGAGATGTCGGCGACCCCTCCTTCTTCTCTT
CCGCGGCGAGCGATGGACATCATTTCATCTTTCAACCCACGCGACGACGA
CGACGACGCCGTCGCCGCGGAAGACGGGGGGGGTGCTGCCTCAGAAACAT
ACACGATGCCCCTCGATGAAGATGATGCGGCGCCCCCCGACGACCGCGAT
GATCACGCCGCCAGTAGAATCGACGGCGACGACGATGACGACGATGACGA
CGAGGACGACAACGACAACGACGCCATGTCGGACGACTGTTTCTCCGACG
ACTCGTTCCACAGGGAGCTCTCGGGGATGGACGGTCCCATCACGCCACCG
CAGCAGCACCGCCCCCCGCCCCCCCCGGAGATGTCGGCGACCCCTCCTTC
TTCTCTTCCGCGGCGA
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