mRNA_L-elsbetiae_contig6339.14990.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6339.14990.1
Unique NamemRNA_L-elsbetiae_contig6339.14990.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig6339.14990.1 vs. uniprot
Match: D7FWT6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWT6_ECTSI)

HSP 1 Score: 72.0 bits (175), Expect = 5.200e-16
Identity = 35/40 (87.50%), Postives = 36/40 (90.00%), Query Frame = 1 
Query:    1 MNQMNQDIHSSVKESDYVSAIHDNAEKFDPRAEEAFKYVQ 120
            MNQMNQDIH S K S YVS+IHDNAEKFDPRAEEAFKYVQ
Sbjct:    1 MNQMNQDIHFSAKHSQYVSSIHDNAEKFDPRAEEAFKYVQ 40
[Close]
BLAST of mRNA_L-elsbetiae_contig6339.14990.1 vs. uniprot
Match: A0A6H5JNE7_9PHAE (Phosphate transporter n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNE7_9PHAE)

HSP 1 Score: 76.6 bits (187), Expect = 2.790e-15
Identity = 37/40 (92.50%), Postives = 39/40 (97.50%), Query Frame = 1 
Query:    1 MNQMNQDIHSSVKESDYVSAIHDNAEKFDPRAEEAFKYVQ 120
            MNQMNQDIHSSVK+S+YVS IHDNAEKFDPRAEEAFKYVQ
Sbjct:  295 MNQMNQDIHSSVKDSEYVSQIHDNAEKFDPRAEEAFKYVQ 334
[Close]
BLAST of mRNA_L-elsbetiae_contig6339.14990.1 vs. uniprot
Match: A0A6H5JNL8_9PHAE (Phosphate transporter n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNL8_9PHAE)

HSP 1 Score: 73.9 bits (180), Expect = 2.420e-14
Identity = 36/40 (90.00%), Postives = 38/40 (95.00%), Query Frame = 1 
Query:    1 MNQMNQDIHSSVKESDYVSAIHDNAEKFDPRAEEAFKYVQ 120
            MNQ+NQDIHSSVK+S YVS IHDNAEKFDPRAEEAFKYVQ
Sbjct:  239 MNQINQDIHSSVKDSGYVSQIHDNAEKFDPRAEEAFKYVQ 278
[Close]
BLAST of mRNA_L-elsbetiae_contig6339.14990.1 vs. uniprot
Match: D7G0K9_ECTSI (Phosphate transporter n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0K9_ECTSI)

HSP 1 Score: 71.6 bits (174), Expect = 1.620e-13
Identity = 33/40 (82.50%), Postives = 39/40 (97.50%), Query Frame = 1 
Query:    1 MNQMNQDIHSSVKESDYVSAIHDNAEKFDPRAEEAFKYVQ 120
            +NQ+N+D+HSSVKES+YVS IHDNAE+FDPRAEEAFKYVQ
Sbjct:  296 INQLNKDVHSSVKESEYVSQIHDNAEQFDPRAEEAFKYVQ 335
[Close]
BLAST of mRNA_L-elsbetiae_contig6339.14990.1 vs. uniprot
Match: D7FWT9_ECTSI (Phosphate transporter n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWT9_ECTSI)

HSP 1 Score: 70.1 bits (170), Expect = 5.650e-13
Identity = 33/40 (82.50%), Postives = 37/40 (92.50%), Query Frame = 1 
Query:    1 MNQMNQDIHSSVKESDYVSAIHDNAEKFDPRAEEAFKYVQ 120
            MNQMNQDI+SSVK+S+YV+ IHDNAEKFDPR EE FKYVQ
Sbjct:  306 MNQMNQDIYSSVKDSEYVNQIHDNAEKFDPRTEEVFKYVQ 345
[Close]
BLAST of mRNA_L-elsbetiae_contig6339.14990.1 vs. uniprot
Match: D7FZJ7_ECTSI (Phosphate transporter n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZJ7_ECTSI)

HSP 1 Score: 59.3 bits (142), Expect = 3.560e-9
Identity = 25/38 (65.79%), Postives = 35/38 (92.11%), Query Frame = 1 
Query:    7 QMNQDIHSSVKESDYVSAIHDNAEKFDPRAEEAFKYVQ 120
            Q++QD+H++VK++DYV AIH+NAE+ DPR E+AFKYVQ
Sbjct:  298 QLDQDVHATVKDNDYVDAIHENAERSDPRTEQAFKYVQ 335
[Close]
BLAST of mRNA_L-elsbetiae_contig6339.14990.1 vs. uniprot
Match: A0A061QS79_9CHLO (Phosphate transporter (Fragment) n=2 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061QS79_9CHLO)

HSP 1 Score: 51.2 bits (121), Expect = 2.540e-6
Identity = 21/36 (58.33%), Postives = 31/36 (86.11%), Query Frame = 1 
Query:   13 NQDIHSSVKESDYVSAIHDNAEKFDPRAEEAFKYVQ 120
            N D+HS+++E D V+AIH+ +EKFDP+ EE+FKY+Q
Sbjct:  314 NHDVHSAIEEDDAVNAIHEFSEKFDPKTEESFKYLQ 349
[Close]
BLAST of mRNA_L-elsbetiae_contig6339.14990.1 vs. uniprot
Match: A0A1Q1NHC6_MARPO (Phosphate transporter n=3 Tax=Marchantia polymorpha TaxID=3197 RepID=A0A1Q1NHC6_MARPO)

HSP 1 Score: 48.5 bits (114), Expect = 2.280e-5
Identity = 21/37 (56.76%), Postives = 29/37 (78.38%), Query Frame = 1 
Query:   10 MNQDIHSSVKESDYVSAIHDNAEKFDPRAEEAFKYVQ 120
            +N DIH SVKE + + A+H+NAE+F+PR E AF Y+Q
Sbjct:  344 VNVDIHKSVKEDEVLDAMHENAERFEPRVEYAFSYLQ 380
[Close]
BLAST of mRNA_L-elsbetiae_contig6339.14990.1 vs. uniprot
Match: A0A7S3YL38_9EUKA (Phosphate transporter n=3 Tax=Lotharella globosa TaxID=91324 RepID=A0A7S3YL38_9EUKA)

HSP 1 Score: 48.1 bits (113), Expect = 3.120e-5
Identity = 22/39 (56.41%), Postives = 28/39 (71.79%), Query Frame = 1 
Query:    4 NQMNQDIHSSVKESDYVSAIHDNAEKFDPRAEEAFKYVQ 120
            N +N+D+H   +  D   +IHDNAE FDPRAEE FKY+Q
Sbjct:  367 NGVNKDLHEITEIDDRTKSIHDNAEVFDPRAEEVFKYLQ 405
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6339.14990.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
D7FWT6_ECTSI5.200e-1687.50Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JNE7_9PHAE2.790e-1592.50Phosphate transporter n=1 Tax=Ectocarpus sp. CCAP ... [more]
A0A6H5JNL8_9PHAE2.420e-1490.00Phosphate transporter n=1 Tax=Ectocarpus sp. CCAP ... [more]
D7G0K9_ECTSI1.620e-1382.50Phosphate transporter n=2 Tax=Ectocarpus siliculos... [more]
D7FWT9_ECTSI5.650e-1382.50Phosphate transporter n=1 Tax=Ectocarpus siliculos... [more]
D7FZJ7_ECTSI3.560e-965.79Phosphate transporter n=1 Tax=Ectocarpus siliculos... [more]
A0A061QS79_9CHLO2.540e-658.33Phosphate transporter (Fragment) n=2 Tax=Tetraselm... [more]
A0A1Q1NHC6_MARPO2.280e-556.76Phosphate transporter n=3 Tax=Marchantia polymorph... [more]
A0A7S3YL38_9EUKA3.120e-556.41Phosphate transporter n=3 Tax=Lotharella globosa T... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6339contigL-elsbetiae_contig6339:98..217 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score75.5
Seed ortholog evalue6.4e-12
Seed eggNOG ortholog2880.D7G0K8
Preferred namePHO89
KEGG koko:K01280,ko:K03306,ko:K14640
KEGG TC2.A.20,2.A.20.2
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0003674,GO:0005215,GO:0005315,GO:0005436,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005886,GO:0005887,GO:0006810,GO:0006811,GO:0006812,GO:0006814,GO:0006817,GO:0006820,GO:0008150,GO:0008324,GO:0012505,GO:0015075,GO:0015077,GO:0015081,GO:0015291,GO:0015293,GO:0015294,GO:0015318,GO:0015319,GO:0015370,GO:0015672,GO:0015698,GO:0016020,GO:0016021,GO:0022804,GO:0022857,GO:0022890,GO:0030001,GO:0031224,GO:0031226,GO:0034220,GO:0035435,GO:0035725,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044425,GO:0044444,GO:0044459,GO:0044464,GO:0046873,GO:0051179,GO:0051234,GO:0055085,GO:0071944,GO:0098655,GO:0098656,GO:0098660,GO:0098661,GO:0098662
EggNOG free text desc.inorganic phosphate transmembrane transporter activity
EggNOG OGsCOG0306@1,KOG2493@2759
EC3.4.14.10
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01002,ko02000,ko03110
Exons1
Model size120
Cds size120
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816699.347033-CDS-L-elsbetiae_contig6339:97..2171622816699.347033-CDS-L-elsbetiae_contig6339:97..217Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6339 98..217 -
1691683749.2432504-CDS-L-elsbetiae_contig6339:97..2171691683749.2432504-CDS-L-elsbetiae_contig6339:97..217Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6339 98..217 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6339.14990.1prot_L-elsbetiae_contig6339.14990.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6339 98..217 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6339.14990.1

>prot_L-elsbetiae_contig6339.14990.1 ID=prot_L-elsbetiae_contig6339.14990.1|Name=mRNA_L-elsbetiae_contig6339.14990.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=40bp
MNQMNQDIHSSVKESDYVSAIHDNAEKFDPRAEEAFKYVQ
back to top

mRNA from alignment at L-elsbetiae_contig6339:98..217-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6339.14990.1 ID=mRNA_L-elsbetiae_contig6339.14990.1|Name=mRNA_L-elsbetiae_contig6339.14990.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=120bp|location=Sequence derived from alignment at L-elsbetiae_contig6339:98..217- (Laminarionema elsbetiae ELsaHSoW15)
ATGAACCAGATGAACCAGGACATCCACTCGAGCGTCAAGGAATCGGACTA
CGTGAGCGCCATCCACGACAACGCCGAGAAGTTCGACCCCCGGGCCGAGG
AGGCCTTCAAGTACGTGCAG
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig6339:98..217-

>mRNA_L-elsbetiae_contig6339.14990.1 ID=mRNA_L-elsbetiae_contig6339.14990.1|Name=mRNA_L-elsbetiae_contig6339.14990.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=240bp|location=Sequence derived from alignment at L-elsbetiae_contig6339:98..217- (Laminarionema elsbetiae ELsaHSoW15)
ATGAACCAGATGAACCAGGACATCCACTCGAGCGTCAAGGAATCGGACTA
CGTGAGCGCCATCCACGACAACGCCGAGAAGTTCGACCCCCGGGCCGAGG
AGGCCTTCAAGTACGTGCAGATGAACCAGATGAACCAGGACATCCACTCG
AGCGTCAAGGAATCGGACTACGTGAGCGCCATCCACGACAACGCCGAGAA
GTTCGACCCCCGGGCCGAGGAGGCCTTCAAGTACGTGCAG
back to top