mRNA_L-elsbetiae_contig6337.14989.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6337.14989.1
Unique NamemRNA_L-elsbetiae_contig6337.14989.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig6337.14989.1 vs. uniprot
Match: A0A6H5J6X1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J6X1_9PHAE)

HSP 1 Score: 295 bits (754), Expect = 2.860e-88
Identity = 247/561 (44.03%), Postives = 288/561 (51.34%), Query Frame = 1 
Query:    4 VLPICMAHKYKVLVLEEFVPGNPGLLGLNINRGMKIRIRLRPSSDEGSFMPFESALDTLLHELVHNEISAHSAKFFKKWDELRAECEKLMREGISGRNMPFAGDGKSLGGGRAPADARAAALEAAEKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQRRAEISRGCGNRPAAEEREEAADNTALD---WECPACTLINSPAVSWCDACGGPRSAAAPAGXXXXXXXXXXXXXXXXXXGGXXXXXSRTGGTAGGVSGREKRPAPTAEAATARARTSRAGAVQN--AAGVRPVNGLSLGGSGXXXXXXXXXXXXXXXXXXXXHSGLSTWTCHECPFRFPNAEERQTCETCGASRHAAKKPAGRSNSINS------SSKSSGGVAVADRGWEQEL-PPWTCGRCTVVNFGTFLLCGTCNAERPF-----GGAGPQEPVTGGGRGAEMSS-----------------GGWAAAQXXXXXXXXXXXXXXXXEGLGSSAAG--------TR---------GSKPAPVARVCRMCTLRNVSEASDCVACGIPFAESEA 1533
            V PIC+AHK+KV++L EF+P NP LLGLN+NRG KI IRLRP SDEGSF P+E  + T+LHELVHN+I  HSAKF++  D+L  EC+KL REGI+GRNMPFAGDG+ LGGGRAP DARAAAL+AAEK                                       Q R  +S+GC          +A D+ A D   WEC  CTL NS  V+ CDACG  RSA  PAG       XXXXXXXXXXX      X   GGT    +GR+KRPAPT  AA        AG +QN   AG R    ++  G         XXXXXXXXXXX   S   TWTC  CPF FPN  ER+TCE+CGA+R     PA   +          ++ + GG       W  EL P WTC  CTVVN G FL C  C AERP       G             A +SS                  GW AAQ                 G+G +A G        TR          ++P    RVCR+CTLRN  EAS+C ACGIP AESEA
Sbjct:   81 VKPICVAHKWKVVLLLEFIPNNPSLLGLNVNRGQKICIRLRPPSDEGSFYPYEFIIGTMLHELVHNQIGPHSAKFYRVLDQLNDECDKLTREGITGRNMPFAGDGQPLGGGRAPNDARAAALKAAEKRQRQQGIMGSGGQRLGGVSGSSPSDAISAAQRAAAAA--QWRHAVSQGCRGHHGCTAGVKA-DDDADDGDHWECGLCTLFNSLTVNACDACGKERSAT-PAGKSVRGRGXXXXXXXXXXX------XXVAGGT---TTGRQKRPAPTTGAAAG------AGRLQNKSTAGAR----MASDGRSVGAPRGGXXXXXXXXXXXRLPSAGRTWTCRSCPFSFPNVSERRTCESCGAARLL---PADAGSGXXXXXXXXXAATAVGGTTGGHTSWGAELLPSWTCEACTVVNPGMFLGCSVCGAERPADEAAEAGXXXXXXXXXXXXXATLSSEWTAEVGXXXXXXXXXXXGWMAAQGSSGGTDCSV-------GVGGAAVGETVGFGGRTRDDPGMESCWSAQPTGETRVCRLCTLRNPPEASNCKACGIPLAESEA 608
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BLAST of mRNA_L-elsbetiae_contig6337.14989.1 vs. uniprot
Match: D7FMC5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMC5_ECTSI)

HSP 1 Score: 285 bits (730), Expect = 2.390e-85
Identity = 257/545 (47.16%), Postives = 298/545 (54.68%), Query Frame = 1 
Query:    1 QVLPICMAHKYKVLVLEEFVPGNPGLLGLNINRGMKIRIRLRPSSDEGSFMPFESALDTLLHELVHNEISAHSAKFFKKWDELRAECEKLMREGISGRNMPFAGDGKSLGGGRAPADARAAALEAAEKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQRRAEISRGCGNRPAAEEREEAADNT--ALDWECPACTLINSPAVSWCDACGGPRSAAAPAGXXXXXXXXXXXXXXXXXXGGXXXXXSRTGGTAGGVSGREKRPAPTAEAATARARTSRAGAVQNAAGVRPVN-GLSLGGSGXXXXXXXXXXXXXXXXXXXXHSGLSTWTCHECPFRFPNAEERQTCETCGASRHAAKKPAGRSNSINSSSKSSGGVAV-----ADRGWEQEL-PPWTCGRCTVVNFGTFLLCGTCNAERPFGGAGP---------------QEPVTGGGRGAEMSSGGWAAAQXXXXXXXXXXXXXXXXE----GLGSSAAGTRG------SKPAPVARVCRMCTLRNVSEASDCVACGIPFAESEA 1533
            QV PIC+AHK+KV++L EF+P NPGLLGLN+NRG KI IRLRP SDEGSF P+E  L T+LHELVHN+I  HSAKF++  D+L  EC+KL+REGI+GRNMPFAGDG+SLGGGRAP DARAAAL+A   XXXXXXXXXXXX         XXXXXXXXXXXXXXXXXX     +S+GCG        E+  DN      WEC  CTL NS  V+ CDACG  RSA  P                XXXX  XXXXX                            R  +    ++ AG R  + G S+G          XXXXXXXXXXX   S   TWTC  CPF FPNA ER+TCE+CGA+R     PA   +            A+         W+ EL P WTC  CTVVN G FL C  C AERP   A                  E     GRG  +++GGW AAQ                     G+G       G      ++PA  AR+CR+CTLRN  EASDC ACGIP A+SEA
Sbjct:   35 QVKPICVAHKWKVVLLLEFIPNNPGLLGLNVNRGQKICIRLRPPSDEGSFYPYEFILGTMLHELVHNQIGPHSAKFYRMLDQLNDECDKLIREGITGRNMPFAGDGQSLGGGRAPEDARAAALKAXXXXXXXXXXXXXXXQRLGGVSGSXXXXXXXXXXXXXXXXXXX--XXVSQGCGGHHGCTAGEKTGDNADDGDHWECGLCTLFNSLTVNACDACGKERSANPPGNSVRDRGAGSSTGGRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGPGRLQK----KSTAGARTASDGRSVGAP------RGXXXXXXXXXXXGLPSAGRTWTCRSCPFSFPNASERRTCESCGAARLL---PADAGSGXXXXXXXXXATAIRGTTGGHTSWDAELLPSWTCDACTVVNPGMFLGCSVCGAERPAEEAXXXXXXXXXXXNLATLSSEWTAEVGRGGGVTAGGWMAAQGSSGGTDCSVGVGTADVRETVGIGGRIRDDPGMESWGSAQPAGEARMCRLCTLRNPPEASDCEACGIPLADSEA 564
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BLAST of mRNA_L-elsbetiae_contig6337.14989.1 vs. uniprot
Match: A0A835YTT9_9STRA (WLM domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YTT9_9STRA)

HSP 1 Score: 132 bits (333), Expect = 3.730e-33
Identity = 69/120 (57.50%), Postives = 82/120 (68.33%), Query Frame = 1 
Query:    1 QVLPICMAHKYKVLVLEEFVPGNPGLLGLNINRGMKIRIRLRPSSDEGSFMPFESALDTLLHELVHNEISAHSAKFFKKWDELRAECEKLMREGISGRNMPFAGDGKSLGGGRAPADARA 360
            QV PIC+ H++ V  LEEF P N GLLG+NINR  KI +RLR   D  +  PFE ALD +LHEL H    AHSA F++  D LR ECE LM  GISGRNMP+ G+G++LGGG A  D RA
Sbjct:    1 QVKPICVKHEWSVAHLEEFYPSNKGLLGVNINR-TKICVRLREPRDADALYPFELALDIVLHELTHMVHGAHSADFYRLLDALREECEALMTAGISGRNMPWQGEGRALGGGSAARDVRA 119
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BLAST of mRNA_L-elsbetiae_contig6337.14989.1 vs. uniprot
Match: UPI001F5DA817 (DNA-dependent metalloprotease WSS1-like n=1 Tax=Lolium rigidum TaxID=89674 RepID=UPI001F5DA817)

HSP 1 Score: 135 bits (340), Expect = 1.020e-31
Identity = 67/131 (51.15%), Postives = 86/131 (65.65%), Query Frame = 1 
Query:    1 QVLPICMAHKYKVLVLEEFVPGNPGLLGLNINRGMKIRIRLRPSSDEGSFMPFESALDTLLHELVHNEISAHSAKFFKKWDELRAECEKLMREGISGRNMPFAGDGKSLGGGRA---PADARAAALEAAEK 384
            QV PI    K++V VL EF P NP LLGLN+NRG ++++RLRP   +  F+P+E  LDT+LHEL HN    H A+F+K WDELR ECE+L+ +GI+G    F G G+ LGG      P   R AAL AA+K
Sbjct:   34 QVQPIMRRRKWRVKVLSEFSPKNPSLLGLNVNRGAEVKLRLRPDGRDNDFIPYEEVLDTMLHELAHNARGPHDAQFYKLWDELRKECEELISKGITGPGQGFDGTGRRLGGFSVHPPPPSLRQAALSAAQK 164
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BLAST of mRNA_L-elsbetiae_contig6337.14989.1 vs. uniprot
Match: A0A6S7MWI1_LACSI (Uncharacterized protein n=3 Tax=Lactuca TaxID=4235 RepID=A0A6S7MWI1_LACSI)

HSP 1 Score: 131 bits (329), Expect = 1.360e-30
Identity = 82/236 (34.75%), Postives = 112/236 (47.46%), Query Frame = 1 
Query:    1 QVLPICMAHKYKVLVLEEFVPGNPGLLGLNINRGMKIRIRLRPSSDEGSFMPFESALDTLLHELVHNEISAHSAKFFKKWDELRAECEKLMREGISGRNMPFAGDGKSLGG----GRAPADARAAALEAAEKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQRRAEISRGCGNR----PAAEEREEAADNT--------ALDWECPACTLINSPAVSWCDACGGPR 660
            QV PI   HK+KV +L EF P NP LLGLNIN G ++++RLR  ++E  F P+E  LDT+LHEL HN+   H+A F+   DE+R ECE+LM +GI+G    F   G+ LGG     + P+  R  AL AA+                                        +RR      C ++    P+       + N         A  W+C  CTL+N P +  C+ACG PR
Sbjct:   33 QVQPIMRKHKWKVNILSEFCPPNPALLGLNINGGAEVKLRLRRQNNEWDFFPYEQILDTMLHELCHNQYGPHNADFYNLLDEIRKECEELMAKGITGTGRGFDLPGRRLGGYFRQQQTPSSLRQKALSAAQNRAQMGTLLPSGPHRLGGDSSMKTALSPVQAAAMAA----ERRLHDDLWCASKSFQEPSGTSEASVSQNISSSEGEPKASSWQCGTCTLLNQPLLLTCEACGTPR 264
[Close]
BLAST of mRNA_L-elsbetiae_contig6337.14989.1 vs. uniprot
Match: A0A446Y5B3_TRITD (WLM domain-containing protein n=15 Tax=Triticeae TaxID=147389 RepID=A0A446Y5B3_TRITD)

HSP 1 Score: 129 bits (325), Expect = 3.830e-30
Identity = 66/131 (50.38%), Postives = 86/131 (65.65%), Query Frame = 1 
Query:    1 QVLPICMAHKYKVLVLEEFVPGNPGLLGLNINRGMKIRIRLRPSSDEGSFMPFESALDTLLHELVHNEISAHSAKFFKKWDELRAECEKLMREGISGRNMPFAGDGKSLGGGRA---PADARAAALEAAEK 384
            QV PI    K++V VL EF P NP LLGLN+NRG+++++RLR    +  F+P+E  LDT+LHEL HN    H A+F+K WDELR ECE+L+ +GI+G    F G G+ LGG      P   R AAL AA+K
Sbjct:   34 QVQPIMRRRKWRVKVLSEFSPKNPRLLGLNVNRGVEVKLRLRRDGRDLDFIPYEEVLDTMLHELAHNARGPHDAQFYKLWDELRKECEELVAKGITGPGQGFDGTGRRLGGFSIHPPPPSLRQAALTAAQK 164
[Close]
BLAST of mRNA_L-elsbetiae_contig6337.14989.1 vs. uniprot
Match: M7Z8S1_TRIUA (WLM domain-containing protein n=4 Tax=Triticinae TaxID=1648030 RepID=M7Z8S1_TRIUA)

HSP 1 Score: 128 bits (321), Expect = 1.260e-29
Identity = 65/131 (49.62%), Postives = 85/131 (64.89%), Query Frame = 1 
Query:    1 QVLPICMAHKYKVLVLEEFVPGNPGLLGLNINRGMKIRIRLRPSSDEGSFMPFESALDTLLHELVHNEISAHSAKFFKKWDELRAECEKLMREGISGRNMPFAGDGKSLGGGRA---PADARAAALEAAEK 384
            QV PI    K++V VL EF P NP LLGLN+NRG+++++RLR    +  F+P+E  LDT+LHEL HN    H A+F+K WDELR ECE+L+ +GI+G    F G G+ LGG      P   R A L AA+K
Sbjct:   34 QVQPIMRRRKWRVKVLSEFSPKNPRLLGLNVNRGVEVKLRLRRDGRDLDFIPYEEVLDTMLHELAHNARGPHDAQFYKLWDELRKECEELVAKGITGPGQGFDGTGRRLGGFSIHPPPPSLRQATLTAAQK 164
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BLAST of mRNA_L-elsbetiae_contig6337.14989.1 vs. uniprot
Match: A0A498IN73_MALDO (Uncharacterized protein n=3 Tax=Maleae TaxID=721813 RepID=A0A498IN73_MALDO)

HSP 1 Score: 131 bits (329), Expect = 1.340e-29
Identity = 67/130 (51.54%), Postives = 85/130 (65.38%), Query Frame = 1 
Query:    1 QVLPICMAHKYKVLVLEEFVPGNPGLLGLNINRGMKIRIRLRPSSDEGSFMPFESALDTLLHELVHNEISAHSAKFFKKWDELRAECEKLMREGISGRNMPFAGDGKSLGGGRAP--ADARAAALEAAEK 384
            QV PI   H+++V +L EF P NP LLGLN+NRG+ +++RLR  + +  F PF+  LDT+LHEL HN    H AKF+K WDELR ECE+LM +GI+G    F   GK LG  R P  +  R  AL AAEK
Sbjct:   34 QVQPIMRNHRWRVKILSEFCPNNPRLLGLNVNRGVHVKLRLRRPNRDTDFYPFDQVLDTMLHELCHNVHGPHDAKFYKLWDELRKECEELMAKGITGSGEGFDLPGKRLGFSRPPPLSSLRKTALAAAEK 163
[Close]
BLAST of mRNA_L-elsbetiae_contig6337.14989.1 vs. uniprot
Match: UPI001F5D7973 (DNA-dependent metalloprotease WSS1-like n=1 Tax=Lolium rigidum TaxID=89674 RepID=UPI001F5D7973)

HSP 1 Score: 128 bits (322), Expect = 3.070e-29
Identity = 65/131 (49.62%), Postives = 86/131 (65.65%), Query Frame = 1 
Query:    1 QVLPICMAHKYKVLVLEEFVPGNPGLLGLNINRGMKIRIRLRPSSDEGSFMPFESALDTLLHELVHNEISAHSAKFFKKWDELRAECEKLMREGISGRNMPFAGDGKSLGGGRA---PADARAAALEAAEK 384
            QV PI    K++V VL EF P NP LLGLN+NRG+++++RLRP   + +F+P+E  LDT+LHEL H     H A+F+K WDELR ECE+L+ +GI+G    F G G+ LGG      P   R A L AA+K
Sbjct:   34 QVQPIMRRRKWRVKVLSEFSPKNPRLLGLNVNRGVEVKLRLRPHGRDHNFIPYERVLDTMLHELAHIARGPHDAQFYKLWDELRKECEELVSKGITGPGQGFDGAGRRLGGFSIHPPPPSLRQATLSAAQK 164
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BLAST of mRNA_L-elsbetiae_contig6337.14989.1 vs. uniprot
Match: A0A5J9TLP8_9POAL (Uncharacterized protein (Fragment) n=1 Tax=Eragrostis curvula TaxID=38414 RepID=A0A5J9TLP8_9POAL)

HSP 1 Score: 129 bits (323), Expect = 3.400e-29
Identity = 64/131 (48.85%), Postives = 86/131 (65.65%), Query Frame = 1 
Query:    1 QVLPICMAHKYKVLVLEEFVPGNPGLLGLNINRGMKIRIRLRPSSDEGSFMPFESALDTLLHELVHNEISAHSAKFFKKWDELRAECEKLMREGISGRNMPFAGDGKSLGGGRA---PADARAAALEAAEK 384
            QV PI   HK++V VL EF P NP LLGLN+  G+++++RLR +  +  F+P+E  LDT+LHEL HN+   H A+F+K WDELR ECE+L+ +GI+G    F G G+ LGG      P   R A L AA+K
Sbjct:   34 QVQPIMRRHKWRVKVLSEFSPRNPRLLGLNVGAGVEVKLRLRRAGRDYDFIPYEEVLDTMLHELCHNQRGPHDAQFYKLWDELRKECEELVSKGITGSGQGFDGTGRRLGGFTVHPPPPSLRQATLAAAQK 164
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6337.14989.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5J6X1_9PHAE2.860e-8844.03Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FMC5_ECTSI2.390e-8547.16Uncharacterized protein n=2 Tax=Ectocarpus silicul... [more]
A0A835YTT9_9STRA3.730e-3357.50WLM domain-containing protein (Fragment) n=1 Tax=T... [more]
UPI001F5DA8171.020e-3151.15DNA-dependent metalloprotease WSS1-like n=1 Tax=Lo... [more]
A0A6S7MWI1_LACSI1.360e-3034.75Uncharacterized protein n=3 Tax=Lactuca TaxID=4235... [more]
A0A446Y5B3_TRITD3.830e-3050.38WLM domain-containing protein n=15 Tax=Triticeae T... [more]
M7Z8S1_TRIUA1.260e-2949.62WLM domain-containing protein n=4 Tax=Triticinae T... [more]
A0A498IN73_MALDO1.340e-2951.54Uncharacterized protein n=3 Tax=Maleae TaxID=72181... [more]
UPI001F5D79733.070e-2949.62DNA-dependent metalloprotease WSS1-like n=1 Tax=Lo... [more]
A0A5J9TLP8_9POAL3.400e-2948.85Uncharacterized protein (Fragment) n=1 Tax=Eragros... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6337contigL-elsbetiae_contig6337:3336..8340 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score280.0
Seed ortholog evalue2.2e-72
Seed eggNOG ortholog2880.D7FMC5
Hectar predicted targeting categoryother localisation
GOsGO:0000322,GO:0000323,GO:0000324,GO:0000724,GO:0000725,GO:0000731,GO:0003674,GO:0003824,GO:0004175,GO:0004222,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005737,GO:0005773,GO:0006139,GO:0006259,GO:0006281,GO:0006301,GO:0006302,GO:0006310,GO:0006464,GO:0006508,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0008233,GO:0008237,GO:0009058,GO:0009059,GO:0009314,GO:0009411,GO:0009416,GO:0009628,GO:0009987,GO:0010224,GO:0010225,GO:0012505,GO:0016740,GO:0016787,GO:0016925,GO:0018130,GO:0018193,GO:0018205,GO:0019438,GO:0019538,GO:0019787,GO:0019789,GO:0019985,GO:0031967,GO:0031975,GO:0032182,GO:0032183,GO:0032446,GO:0033554,GO:0034641,GO:0034645,GO:0034654,GO:0036211,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0050896,GO:0051716,GO:0061659,GO:0061665,GO:0070011,GO:0070647,GO:0071704,GO:0071897,GO:0090304,GO:0140096,GO:1901360,GO:1901362,GO:1901564,GO:1901576,GO:1990414,GO:1990466
EggNOG free text desc.zinc ion transmembrane transporter activity
EggNOG OGsKOG1558@1,KOG1558@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Ec32 ortholog descriptionZinc finger, RanBP2-type
Ec32 orthologEc-17_003490.1
Exons5
Model size1596
Cds size1578
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6337.14989.1prot_L-elsbetiae_contig6337.14989.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6337 3336..8322 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816699.2398806-CDS-L-elsbetiae_contig6337:3335..44251622816699.2398806-CDS-L-elsbetiae_contig6337:3335..4425Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6337 3336..4425 -
1691683749.1714063-CDS-L-elsbetiae_contig6337:3335..44251691683749.1714063-CDS-L-elsbetiae_contig6337:3335..4425Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6337 3336..4425 -
1622816699.256526-CDS-L-elsbetiae_contig6337:5453..55871622816699.256526-CDS-L-elsbetiae_contig6337:5453..5587Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6337 5454..5587 -
1691683749.184152-CDS-L-elsbetiae_contig6337:5453..55871691683749.184152-CDS-L-elsbetiae_contig6337:5453..5587Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6337 5454..5587 -
1622816699.2690437-CDS-L-elsbetiae_contig6337:6587..66791622816699.2690437-CDS-L-elsbetiae_contig6337:6587..6679Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6337 6588..6679 -
1691683749.1932454-CDS-L-elsbetiae_contig6337:6587..66791691683749.1932454-CDS-L-elsbetiae_contig6337:6587..6679Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6337 6588..6679 -
1622816699.2817733-CDS-L-elsbetiae_contig6337:6901..70391622816699.2817733-CDS-L-elsbetiae_contig6337:6901..7039Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6337 6902..7039 -
1691683749.2023413-CDS-L-elsbetiae_contig6337:6901..70391691683749.2023413-CDS-L-elsbetiae_contig6337:6901..7039Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6337 6902..7039 -
1622816699.296489-CDS-L-elsbetiae_contig6337:8198..83221622816699.296489-CDS-L-elsbetiae_contig6337:8198..8322Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6337 8199..8322 -
1691683749.2145312-CDS-L-elsbetiae_contig6337:8198..83221691683749.2145312-CDS-L-elsbetiae_contig6337:8198..8322Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6337 8199..8322 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816699.310052-UTR-L-elsbetiae_contig6337:8322..83401622816699.310052-UTR-L-elsbetiae_contig6337:8322..8340Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6337 8323..8340 -
1691683749.2287762-UTR-L-elsbetiae_contig6337:8322..83401691683749.2287762-UTR-L-elsbetiae_contig6337:8322..8340Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6337 8323..8340 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6337.14989.1

>prot_L-elsbetiae_contig6337.14989.1 ID=prot_L-elsbetiae_contig6337.14989.1|Name=mRNA_L-elsbetiae_contig6337.14989.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=526bp
MAHKYKVLVLEEFVPGNPGLLGLNINRGMKIRIRLRPSSDEGSFMPFESA
LDTLLHELVHNEISAHSAKFFKKWDELRAECEKLMREGISGRNMPFAGDG
KSLGGGRAPADARAAALEAAEKRKRQQGVMPGGGHRLGGGGDEGLWGAGS
GSAAQRAAAAAQRRAEISRGCGNRPAAEEREEAADNTALDWECPACTLIN
SPAVSWCDACGGPRSAAAPAGAAASAGAASAAGVSCGGGGGSGHGGSRTG
GTAGGVSGREKRPAPTAEAATARARTSRAGAVQNAAGVRPVNGLSLGGSG
SSSSGSGGSGGGGGGGGGGGHSGLSTWTCHECPFRFPNAEERQTCETCGA
SRHAAKKPAGRSNSINSSSKSSGGVAVADRGWEQELPPWTCGRCTVVNFG
TFLLCGTCNAERPFGGAGPQEPVTGGGRGAEMSSGGWAAAQGGGGGAEFT
AGRGAVGEGLGSSAAGTRGSKPAPVARVCRMCTLRNVSEASDCVACGIPF
AESEAAAAAAAAMTGGGGGGGSGASG
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mRNA from alignment at L-elsbetiae_contig6337:3336..8340-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6337.14989.1 ID=mRNA_L-elsbetiae_contig6337.14989.1|Name=mRNA_L-elsbetiae_contig6337.14989.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=5005bp|location=Sequence derived from alignment at L-elsbetiae_contig6337:3336..8340- (Laminarionema elsbetiae ELsaHSoW15)
CAGGTCCTCCCGATCTGTATGGCTCACAAGTATAAGGTGCTGGTGCTGGA
GGAGTTCGTGCCTGGCAACCCGGGATTACTCGGCTTGAACATAAACCGCG
GCATGAAGATTCGCATCCGCTTGCGGCCGTCTTCGGATGAAGGTGAGACA
TAAAACAAATAATTCATTACACTCGCGCGCACACACACACACACAAACAC
ACACACGAGGACTGGTTCGATTTCACAAGCAGCGGAAGGGTGGGACAAGA
AATTGCTCTGCAAGTGCGGAGTCCTGTTTTCGTCCATCCTTTTTTTGTAT
TAGCTCTCTTTCTGTGGCCTTTCCTTACTTCTTCATCACGGTCCTTGGCT
GGAGCCAGAAAGACTAGGCAACCCTTGGTCCCTTGCATGCTTTTTTGTAC
GAACATTGTTTTACTCTGAGCTTTTGCTCTGAATAGTTTACTCTCTTTGG
TGCATCGTCCTTGGACGTGCGATAATGCATCTACACCCGGCCACTCTCTT
TCCTGCCGTTCTACATATACCTGGGGGTTCGGCAGCTCCCTTTTTTTTCG
ATTTTTTTCGTCGTATTAAACCAGCGCTTGAGAGGCGTGTTTGCCAGACC
TCTGATTCGTGGTAAAAGCCACACAGACGGGCTTCTCCCCTGAGTCCCCC
TCTCCCACCCTTCTCCGGTGCTTGCCTTCGGTGTTTAACGCGAGAAGAGT
TAATCCGTCTCTTCCCTCCCCTCGCGCTTACAATGTAAATACTTTCCCTT
CCTTTCCTCCTCAGGGAAGAAAACCCCCTCAAAACTTTTTCGGCTTTTTC
GAAGTTATTTTTTCCGCTCGAGAGCTTTTTTATTGTTTGGTTCCGGGAAA
AGATGCGTGCATCCACCCCCCCTCCCACCCAGTAGCCTTCGTAGGCTTTA
CTGTAAGAAATTATGTGGGATACAATATGGAAACGGCTAATGGGGAGGTC
GGTTCGGGGCTAGGGTCAGGATTGGGTTAGGGTTAAAAAGGGGTACTGTC
TGTTGTTTCCTATACCGTAGGTGACACAAGATACCACACCCCCTGGATCG
AATTTTAGAGCTCGATTACTCCGTAGCGAAGAAGGTGCCAGCTCCAAACA
ACACATTTTCGGACAGCCCTCGACTAGATCTTTCCAGTGCCACCCCTTTC
GGCACTGTCATTCTTCTCGCTGGGGAGGAATCGAGCTTTGAAAACCTGTC
CAGGGGGTGTGGTATCTTGTGTCACCTACGGTATAGACAGGAGTTCTTCG
CGAAGGCAGTCCCTCCCACCCCCCCCCCCCCCCCTCCTCTTTTCTCCTCA
GGAAGCTTCATGCCGTTCGAGAGCGCCCTCGACACGCTGCTGCACGAGCT
GGTGCACAACGAGATCAGCGCGCACAGCGCCAAGTTCTTCAAGAAGTGGG
ACGAGCTGAGAGCCGAGTGCGAAAAGCTCATGAGGGAAGGTACGCATCTG
TTCTGAGAGGAGGTACATAGTTTGTATGCTTCGAAGCACGTATTTTCGTG
CCCCCTATACTAAATAGGAGAAGTGGAACGGCGCTCCGTCACTGCCTCCA
TACGGGGTGCCGCGGCTGATGGTCACATCACCAAGGCAAGCAGCGATTGG
GCTAAATTCACGCAACCCCCGCGGACCCCCCCCCCTCCTCCCCCGCCGGC
GGTCGTCGCAGGTATTTCTGGCCGCAACATGCCGTTCGCGGGTGACGGGA
AGTCTCTGGGAGGGGGACGAGCGCCGGCCGACGCTAGGGCTGCGGCACTG
GAGGTACGCAGCAGCAGCGGCGCGTTTTGTTTTTCCTTTTTGGCTCTTCG
GCCGTGCGCGCTTTCTATTTTTCGCCTTCTTTTTTTGCGGTCCCAAGATG
TCGCCGCTTTAGATGGGTGCATATGGAATCGACCGCGTCAGTGTTGGACT
AGCACAGACTCATGGAGGTGTACTGGATAGAGAGATCGGAACGGTTTTTA
ATGTGAAGACAGCACAACACACAACACACACATGTGTAGATTCTCGCTCT
CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCGTTTGTGTA
GATCCACCCCCGTTGTCGGTCTTCTCTCTGTCCAAGCTTGGTTCTCCCGT
GCGCACTCCACAGAGAAAACGCTACCATATGCCTTTTGGCCTGGACTATG
CACTCACGCCCGCATCCCTGCCGACCTGCATGTACCGAAAAACACCGTAG
ACTAGCTAGCGCTCGTGAGGTCGCTTGTGAGAGGTACATACAAGTATACA
TGTAGCCGGACGCACGCGCACGCGGCGCCCGAGCTTCCAAGTTTTGTTTG
TTCTGTTTTCCCGTCACACTAAACCGGCGCTCGAGAGGCATCTTGCCAGG
GAGCTCTGATCCGTGGCCTCTCACAGAAGGGCTCCTTCCTCCCGAACCCA
CCCCTTCTGCGGTGCCCCCGATCTTTTATCGCAACAAAGAAGAGTTTGGC
CGTCTCTCGCTGCATTGCCTCAATTTGGCTCAACTTCGCCACCCGTGAGC
CCCATCGCCACTGACTGGTGGGGCTCCGTGCTGCGCACCAGAAGCCAGAC
CCCTCTCCCAACGCAAACGTACATGCATCAGTCACTACTATGTCGTTAGT
CTTTCTTTTTTTTTCCCAAACCAAACATCTAGACCCCTCTCCCATACGCA
TGCGTACATACGATGAGCAGTATCTGTAGTTCGTTCCGCATTTTTGATAA
CCGTGGGTCTCGGCCCGGCCTGGCTCGGCCGCGCTTTTTGTCGCATGAGA
CAGGCCGCGGAGAAGCGGAAGCGGCAACAGGGCGTCATGCCCGGCGGGGG
GCACCGTCTGGGCGGCGGGGGCGACGAGGGCTTGTGGGGTGCCGGCTCAG
GTTCCGCCGCACAACGCGCCGCGGCCGCCGCGCAACGGTGAGTTTTGTCA
CATCCGTACACACCCGAACCCCGCCTTTGTGTTCGGAAGGAATTCGGGGG
AGGGGGGGGGGGCTTCCTGATTCCTTTGATCGAGTTTTCGTCGGAATTCA
TAGTTGGTGTGACTTCGGAGGGTGGCCGCTGGTCTGCTGGTTGGGACGTC
CTTGAGCGAGAGTACTTGGCGGTTGACCTGACAGAGCGTTCGTTATGTAG
GGGAAGTTTTGAGGTTTTCTAATAATATTAGGTGTTTTTCTACCTTTGGC
CGGACCAATATTACATCACTATCTAGACTACTGCTGTGCTGAATTGTTAA
TTCACCACGGATTCCCGCCTCTAACGTACGTGGGGAGGTTCTGTCTTTGA
TTTCCCGATTTATTTTCAGGAAAGGAAGGGAAAGGGTAGCTTTTTAAAAA
TAAACAATGAATCAAAGATGGAACCTACCCCACACTAGAGCAAGGACTCG
ATATGGGGTTCAAACGGTATTCCATACAGAGACGTAATATTTGGCGAAGC
GAGCAGAAAAACAACCTACATATCAGAAGAGTTCAACATGTCCCCTGCAA
AGATTTAAGATTTGCGAGGTCGGCCAACAAATATTCAGGCGGGTAGAGCC
CGCCGTGATGCCGTAATGTTGTCATCTACTTCAAAATAGGAACACACCGC
ATTGTTGAACTAAATCAAAATGCTGGTTTAATACATGTGGGTTTTTGTTT
GGGGAGTTCCTTTTTGTGAAGGCGCTGGCTTCCGAGAAGAGACCCAAGCG
CCCACCAATCGAGAGCCCGAGGCAAACAAGCTTATTTTCATGTTGTCGGT
CTTTCTGGTTGCAATAAGCAGCTCTAAATTAGTGTTCACAGGACATGCGA
TGAGAGTATCCCAGAAGTTATTCCTGAGAGCTCCTGCAGCCTGCGCCCGT
GTTGTCGTGGCGCGCTCTCTCCGATTTCTTCCGTGTTACTGTATTGGTCA
TCTTTTTCAAGTGGACTGCCGGGGCTGACTTCCTGACGGTAAATTGTTCT
TTCCCAATCCGCCAGGCGGGCCGAAATCAGCAGGGGCTGTGGGAATCGCC
CAGCGGCGGAAGAACGGGAGGAAGCGGCCGACAACACCGCCCTAGACTGG
GAGTGCCCAGCGTGTACCCTCATAAACTCCCCCGCGGTATCGTGGTGTGA
CGCCTGCGGAGGTCCACGGTCGGCCGCCGCGCCCGCCGGAGCAGCCGCCT
CCGCCGGAGCCGCCTCCGCCGCCGGGGTTTCCTGCGGCGGTGGCGGTGGT
AGTGGCCATGGCGGATCTCGTACCGGAGGCACTGCTGGGGGGGTATCGGG
TCGTGAGAAGCGACCTGCTCCGACTGCGGAGGCGGCGACCGCTCGAGCTC
GAACCTCGAGAGCGGGAGCGGTGCAGAATGCAGCGGGCGTGCGGCCGGTG
AACGGCCTTTCCCTTGGAGGTTCCGGCAGCAGCAGTAGTGGTAGCGGTGG
TAGCGGCGGTGGAGGCGGAGGCGGCGGCGGCGGCGGGCATTCGGGGCTGA
GCACTTGGACCTGCCACGAGTGCCCGTTCAGGTTTCCAAACGCGGAGGAG
AGGCAGACCTGTGAGACCTGCGGAGCTTCGCGCCACGCCGCCAAGAAGCC
TGCAGGAAGAAGCAACAGCATCAACAGCAGCAGCAAGAGCAGCGGTGGCG
TCGCCGTTGCAGACCGGGGATGGGAACAGGAGCTGCCGCCGTGGACGTGC
GGCCGGTGCACCGTGGTGAACTTCGGCACGTTTTTGCTCTGCGGGACGTG
TAACGCCGAACGGCCCTTTGGGGGGGCGGGGCCACAGGAGCCAGTGACGG
GGGGCGGGAGGGGGGCAGAAATGTCCTCCGGGGGGTGGGCTGCAGCGCAA
GGCGGCGGCGGCGGTGCCGAGTTTACCGCGGGCAGAGGCGCCGTCGGAGA
GGGCCTCGGTTCCTCGGCAGCGGGTACCCGCGGTTCGAAGCCCGCTCCAG
TAGCCAGGGTGTGCCGGATGTGCACTCTCCGAAATGTCTCCGAGGCTTCC
GACTGCGTGGCTTGCGGGATTCCGTTCGCGGAAAGCGAGGCTGCCGCTGC
CGCTGCTGCTGCCATGACCGGTGGGGGTGGTGGCGGCGGCAGCGGTGCCA
GTGGT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig6337:3336..8340-

>mRNA_L-elsbetiae_contig6337.14989.1 ID=mRNA_L-elsbetiae_contig6337.14989.1|Name=mRNA_L-elsbetiae_contig6337.14989.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=3156bp|location=Sequence derived from alignment at L-elsbetiae_contig6337:3336..8340- (Laminarionema elsbetiae ELsaHSoW15)
ATGGCTCACAAGTATAAGGTGCTGGTGCTGGAGGAGTTCGTGCCTGGCAA
CCCGGGATTACTCGGCTTGAACATAAACCGCGGCATGAAGATTCGCATCC
GCTTGCGGCCGTCTTCGGATGAAGATGGCTCACAAGTATAAGGTGCTGGT
GCTGGAGGAGTTCGTGCCTGGCAACCCGGGATTACTCGGCTTGAACATAA
ACCGCGGCATGAAGATTCGCATCCGCTTGCGGCCGTCTTCGGATGAAGGA
AGCTTCATGCCGTTCGAGAGCGCCCTCGACACGCTGCTGCACGAGCTGGT
GCACAACGAGATCAGCGCGCACAGCGCCAAGTTCTTCAAGAAGTGGGACG
AGCTGAGAGCCGAGTGCGAAAAGCTCATGAGGGAAGGAAGCTTCATGCCG
TTCGAGAGCGCCCTCGACACGCTGCTGCACGAGCTGGTGCACAACGAGAT
CAGCGCGCACAGCGCCAAGTTCTTCAAGAAGTGGGACGAGCTGAGAGCCG
AGTGCGAAAAGCTCATGAGGGAAGGTATTTCTGGCCGCAACATGCCGTTC
GCGGGTGACGGGAAGTCTCTGGGAGGGGGACGAGCGCCGGCCGACGCTAG
GGCTGCGGCACTGGAGGTATTTCTGGCCGCAACATGCCGTTCGCGGGTGA
CGGGAAGTCTCTGGGAGGGGGACGAGCGCCGGCCGACGCTAGGGCTGCGG
CACTGGAGGCCGCGGAGAAGCGGAAGCGGCAACAGGGCGTCATGCCCGGC
GGGGGGCACCGTCTGGGCGGCGGGGGCGACGAGGGCTTGTGGGGTGCCGG
CTCAGGTTCCGCCGCACAACGCGCCGCGGCCGCCGCGCAACGGCCGCGGA
GAAGCGGAAGCGGCAACAGGGCGTCATGCCCGGCGGGGGGCACCGTCTGG
GCGGCGGGGGCGACGAGGGCTTGTGGGGTGCCGGCTCAGGTTCCGCCGCA
CAACGCGCCGCGGCCGCCGCGCAACGGCGGGCCGAAATCAGCAGGGGCTG
TGGGAATCGCCCAGCGGCGGAAGAACGGGAGGAAGCGGCCGACAACACCG
CCCTAGACTGGGAGTGCCCAGCGTGTACCCTCATAAACTCCCCCGCGGTA
TCGTGGTGTGACGCCTGCGGAGGTCCACGGTCGGCCGCCGCGCCCGCCGG
AGCAGCCGCCTCCGCCGGAGCCGCCTCCGCCGCCGGGGTTTCCTGCGGCG
GTGGCGGTGGTAGTGGCCATGGCGGATCTCGTACCGGAGGCACTGCTGGG
GGGGTATCGGGTCGTGAGAAGCGACCTGCTCCGACTGCGGAGGCGGCGAC
CGCTCGAGCTCGAACCTCGAGAGCGGGAGCGGTGCAGAATGCAGCGGGCG
TGCGGCCGGTGAACGGCCTTTCCCTTGGAGGTTCCGGCAGCAGCAGTAGT
GGTAGCGGTGGTAGCGGCGGTGGAGGCGGAGGCGGCGGCGGCGGCGGGCA
TTCGGGGCTGAGCACTTGGACCTGCCACGAGTGCCCGTTCAGGTTTCCAA
ACGCGGAGGAGAGGCAGACCTGTGAGACCTGCGGAGCTTCGCGCCACGCC
GCCAAGAAGCCTGCAGGAAGAAGCAACAGCATCAACAGCAGCAGCAAGAG
CAGCGGTGGCGTCGCCGTTGCAGACCGGGGATGGGAACAGGAGCTGCCGC
CGTGGACGTGCGGCCGGTGCACCGTGGTGAACTTCGGCACGTTTTTGCTC
TGCGGGACGTGTAACGCCGAACGGCCCTTTGGGGGGGCGGGGCCACAGGA
GCCAGTGACGGGGGGCGGGAGGGGGGCAGAAATGTCCTCCGGGGGGTGGG
CTGCAGCGCAAGGCGGCGGCGGCGGTGCCGAGTTTACCGCGGGCAGAGGC
GCCGTCGGAGAGGGCCTCGGTTCCTCGGCAGCGGGTACCCGCGGTTCGAA
GCCCGCTCCAGTAGCCAGGGTGTGCCGGATGTGCACTCTCCGAAATGTCT
CCGAGGCTTCCGACTGCGTGGCTTGCGGGATTCCGTTCGCGGAAAGCGAG
GCTGCCGCTGCCGCTGCTGCTGCCATGACCGGTGGGGGTGGTGGCGGCGG
CAGCGGTGCCAGTGGTGCGGGCCGAAATCAGCAGGGGCTGTGGGAATCGC
CCAGCGGCGGAAGAACGGGAGGAAGCGGCCGACAACACCGCCCTAGACTG
GGAGTGCCCAGCGTGTACCCTCATAAACTCCCCCGCGGTATCGTGGTGTG
ACGCCTGCGGAGGTCCACGGTCGGCCGCCGCGCCCGCCGGAGCAGCCGCC
TCCGCCGGAGCCGCCTCCGCCGCCGGGGTTTCCTGCGGCGGTGGCGGTGG
TAGTGGCCATGGCGGATCTCGTACCGGAGGCACTGCTGGGGGGGTATCGG
GTCGTGAGAAGCGACCTGCTCCGACTGCGGAGGCGGCGACCGCTCGAGCT
CGAACCTCGAGAGCGGGAGCGGTGCAGAATGCAGCGGGCGTGCGGCCGGT
GAACGGCCTTTCCCTTGGAGGTTCCGGCAGCAGCAGTAGTGGTAGCGGTG
GTAGCGGCGGTGGAGGCGGAGGCGGCGGCGGCGGCGGGCATTCGGGGCTG
AGCACTTGGACCTGCCACGAGTGCCCGTTCAGGTTTCCAAACGCGGAGGA
GAGGCAGACCTGTGAGACCTGCGGAGCTTCGCGCCACGCCGCCAAGAAGC
CTGCAGGAAGAAGCAACAGCATCAACAGCAGCAGCAAGAGCAGCGGTGGC
GTCGCCGTTGCAGACCGGGGATGGGAACAGGAGCTGCCGCCGTGGACGTG
CGGCCGGTGCACCGTGGTGAACTTCGGCACGTTTTTGCTCTGCGGGACGT
GTAACGCCGAACGGCCCTTTGGGGGGGCGGGGCCACAGGAGCCAGTGACG
GGGGGCGGGAGGGGGGCAGAAATGTCCTCCGGGGGGTGGGCTGCAGCGCA
AGGCGGCGGCGGCGGTGCCGAGTTTACCGCGGGCAGAGGCGCCGTCGGAG
AGGGCCTCGGTTCCTCGGCAGCGGGTACCCGCGGTTCGAAGCCCGCTCCA
GTAGCCAGGGTGTGCCGGATGTGCACTCTCCGAAATGTCTCCGAGGCTTC
CGACTGCGTGGCTTGCGGGATTCCGTTCGCGGAAAGCGAGGCTGCCGCTG
CCGCTGCTGCTGCCATGACCGGTGGGGGTGGTGGCGGCGGCAGCGGTGCC
AGTGGT
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