mRNA_L-elsbetiae_contig6336.14987.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6336.14987.1
Unique NamemRNA_L-elsbetiae_contig6336.14987.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig6336.14987.1 vs. uniprot
Match: D8LHE9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHE9_ECTSI)

HSP 1 Score: 224 bits (572), Expect = 7.080e-69
Identity = 132/228 (57.89%), Postives = 160/228 (70.18%), Query Frame = 1 
Query:    1 MNVVVQVFGAAGLVETMVELAYVISSRQYFNPFEEVFFLTTVVFESGAELLFLSVGYCWLRRHSNLRTSVKTLSKDPVHHIAAVATDSADDISWELSALSHASIVLSLVPLLAWLTFFPVWGSSFS-GVNDQDLREALSICSLVGVGAFVVSSARAVVSSLGVDRQSAMDVVVAIGMVLYAMQKCFVVYVLLSNLERLCPNVLGKALIAFLCLEVVSVAIGVVALISV 681
            M V VQVFGAAGLVET+VE+AYV+++ + F  FEE +FL +V FE   ELLFL  G C L R+SN RT+ + L+KDPVHH+AAVATDS D +SWE +ALS AS V+SL+PLLAW TF PVWG  F+    D+ LR ALS  SL GV A + S  RA  SS G  RQ AMD +V +G+V YA QK F V VL S  ERLC  VLGKAL+  L +E++SVA  VV + SV
Sbjct:    1 MEVAVQVFGAAGLVETVVEVAYVVTTLRRFTTFEEWYFLASVSFEVAGELLFLFAGICLLSRNSNRRTTARALTKDPVHHVAAVATDS-DYMSWEFAALSLASTVVSLLPLLAWATFLPVWGEPFAEDGGDEGLRVALSAFSLTGVVAMLASGERARRSSPGSKRQRAMDTLVVVGVVSYATQKAFEVCVLASAWERLCTGVLGKALVVLLTVEILSVAFAVVVIFSV 227
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BLAST of mRNA_L-elsbetiae_contig6336.14987.1 vs. uniprot
Match: A0A6H5JPP1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPP1_9PHAE)

HSP 1 Score: 129 bits (325), Expect = 3.320e-33
Identity = 78/137 (56.93%), Postives = 94/137 (68.61%), Query Frame = 1 
Query:  274 ISWELSALSHASIVLSLVPLLAWLTFFPVWGSSFSGVN-DQDLREALSICSLVGVGAFVVSSARAVVSSLGVDRQSAMDVVVAIGMVLYAMQKCFVVYVLLSNLERLCPNVLGKALIAFLCLEVVSVAIGVVALISV 681
            +SWE +ALS AS V+SLVPLLAW TF PVWG  F+  + D+DLR ALS  SL GV A + S+ RA  SS G  RQ AMD +V +G+V YA QK F V VL S  ERLC  VLGKAL+  L +E++SVA  VV + SV
Sbjct:    1 MSWEFAALSLASTVVSLVPLLAWATFLPVWGEPFAEDDGDEDLRVALSAFSLTGVVAMLASAERARRSSPGSKRQRAMDTLVVVGVVSYATQKAFEVCVLASAWERLCSGVLGKALVVLLTVEILSVAFAVVVIFSV 137
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6336.14987.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LHE9_ECTSI7.080e-6957.89Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JPP1_9PHAE3.320e-3356.93Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6336contigL-elsbetiae_contig6336:3005..4731 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size1066
Cds size738
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6336.14987.1prot_L-elsbetiae_contig6336.14987.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6336 3005..4403 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816699.1730058-CDS-L-elsbetiae_contig6336:3004..31071622816699.1730058-CDS-L-elsbetiae_contig6336:3004..3107Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6336 3005..3107 +
1691683749.1372385-CDS-L-elsbetiae_contig6336:3004..31071691683749.1372385-CDS-L-elsbetiae_contig6336:3004..3107Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6336 3005..3107 +
1622816699.186434-CDS-L-elsbetiae_contig6336:3768..44031622816699.186434-CDS-L-elsbetiae_contig6336:3768..4403Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6336 3769..4403 +
1691683749.1488733-CDS-L-elsbetiae_contig6336:3768..44031691683749.1488733-CDS-L-elsbetiae_contig6336:3768..4403Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6336 3769..4403 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816699.1990528-UTR-L-elsbetiae_contig6336:4403..47311622816699.1990528-UTR-L-elsbetiae_contig6336:4403..4731Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6336 4404..4731 +
1691683749.1589608-UTR-L-elsbetiae_contig6336:4403..47311691683749.1589608-UTR-L-elsbetiae_contig6336:4403..4731Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6336 4404..4731 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6336.14987.1

>prot_L-elsbetiae_contig6336.14987.1 ID=prot_L-elsbetiae_contig6336.14987.1|Name=mRNA_L-elsbetiae_contig6336.14987.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=246bp
MNVVVQVFGAAGLVETMVELAYVISSRQYFNPFEEVFFLTTVVFESGAEL
LFLSVGYCWLRRHSNLRTSVKTLSKDPVHHIAAVATDSADDISWELSALS
HASIVLSLVPLLAWLTFFPVWGSSFSGVNDQDLREALSICSLVGVGAFVV
SSARAVVSSLGVDRQSAMDVVVAIGMVLYAMQKCFVVYVLLSNLERLCPN
VLGKALIAFLCLEVVSVAIGVVALISVACPLPLCVGDMHPLQNDA*
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mRNA from alignment at L-elsbetiae_contig6336:3005..4731+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6336.14987.1 ID=mRNA_L-elsbetiae_contig6336.14987.1|Name=mRNA_L-elsbetiae_contig6336.14987.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1727bp|location=Sequence derived from alignment at L-elsbetiae_contig6336:3005..4731+ (Laminarionema elsbetiae ELsaHSoW15)
ATGAACGTTGTGGTGCAAGTCTTTGGCGCGGCCGGCCTGGTCGAAACGAT
GGTGGAGCTCGCCTACGTCATCTCGAGTCGGCAATACTTCAACCCCTTCG
AAGGTACGACAAGGGCGTTGGTGTTTGTTTTCTCGACAACAGTTTCACTT
TTTTGTTTCGTCTCGAGGATGTGATGACGCAAGCCGGCCAAGCGTTGCAC
CCAATTCAAGCGAGGGAGATAACGCGATGTTGCACGGTTGTCCCCTCCCT
GTCTGACGTCTGAGACAACGTGTATACTGACGTCGCCGGTAGTGAATCTA
ACGGTGTTCTTCTGAAGCTTGCCTATCCATGTTCTCTCGGGGATGCACGT
CTCCGCTGCGAAAGAAGATCGGCCCGTCAATCCTTTACTTCCATATTTCT
GAAATGTTGGAGTCGTGCCTCTCTTGGCCCTACAGTCTGCGCCGCCAGAA
ACGTGGGATTGGTCACGGGATAGGGTGCATGCACCCCATATTATGCACCT
GCGAAGAGAGAGAGTTGTGCCAGTGTTATGGACCAAGGAGATGCCCAAAC
TCGGACCCGCCTTCGGTTCACTCCAACGCGCCCGCTCCTTTGGAGAGGAA
CTACATACTACGGTATGTACAGGTCGACAAGAAAAGACATAACATTTGGC
GAAGAAAAGGCTACGCGCAGTGAATTAACAGTCCGAGATATTTACTCCTG
AATTCCCACCCATCGCCCGTTCCCACTCGCGCCCTTGCTCGCCGCCCGCC
TCTTCCCGAGCCAGAGGTGTTCTTCCTCACAACTGTGGTTTTCGAAAGTG
GGGCAGAACTCCTCTTCCTTTCCGTCGGTTACTGCTGGTTAAGACGACAC
TCAAACCTCAGAACCTCTGTGAAAACCCTTTCGAAGGACCCTGTGCATCA
CATCGCGGCAGTGGCAACGGACTCCGCGGATGATATCAGCTGGGAGCTCT
CTGCACTCTCGCATGCCAGCATAGTCCTGTCCTTGGTTCCGCTGCTCGCA
TGGTTGACGTTCTTCCCCGTGTGGGGTTCATCATTTAGCGGCGTTAATGA
CCAAGATCTGCGTGAGGCCTTGTCCATTTGCTCCCTTGTGGGCGTGGGGG
CATTCGTTGTCTCCAGTGCTAGGGCCGTTGTTTCCTCGCTAGGCGTAGAT
AGACAAAGCGCAATGGATGTAGTTGTTGCCATCGGCATGGTTCTCTACGC
CATGCAGAAGTGTTTCGTCGTGTACGTTTTGCTGTCGAATCTGGAAAGAC
TCTGCCCCAACGTACTCGGCAAGGCCTTGATTGCCTTCTTGTGTCTCGAG
GTGGTGTCGGTCGCTATTGGTGTCGTGGCATTGATTTCGGTTGCATGTCC
TCTGCCACTATGCGTAGGAGATATGCACCCCTTGCAAAACGACGCTTGAA
GTTTCTCCTGAGGTCCTCTCTCTGAATTCGCCTGTGCGTAATTGCTACAT
AGTTCGAGAACGGAATCGTTGGGTCGACTGTGGCTTCATGCAATGTGTGT
TTTTGGGAAGGGAAACACTTGATCCTCCACATGTAAGAGGTGTCCAGGTA
AGCTGGGGACGCATTTCCCAGAAGGGGTTATGGAACGAACGCTGAAGCTG
GGTGGTATGCCCATGGTTGGCGGTATGTATGAACCCGAGGGAGTCCCGAA
CCACCATATTCTTCGGAAACGGTATTAACCGTGGAGAGGAGGGCTTTCGA
ACCCTGGACTTTTAATATTTATTTTTT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig6336:3005..4731+

>mRNA_L-elsbetiae_contig6336.14987.1 ID=mRNA_L-elsbetiae_contig6336.14987.1|Name=mRNA_L-elsbetiae_contig6336.14987.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1476bp|location=Sequence derived from alignment at L-elsbetiae_contig6336:3005..4731+ (Laminarionema elsbetiae ELsaHSoW15)
ATGAACGTTGTGGTGCAAGTCTTTGGCGCGGCCGGCCTGGTCGAAACGAT
GGTGGAGCTCGCCTACGTCATCTCGAGTCGGCAATACTTCAACCCCTTCG
AAGATGAACGTTGTGGTGCAAGTCTTTGGCGCGGCCGGCCTGGTCGAAAC
GATGGTGGAGCTCGCCTACGTCATCTCGAGTCGGCAATACTTCAACCCCT
TCGAAGAGGTGTTCTTCCTCACAACTGTGGTTTTCGAAAGTGGGGCAGAA
CTCCTCTTCCTTTCCGTCGGTTACTGCTGGTTAAGACGACACTCAAACCT
CAGAACCTCTGTGAAAACCCTTTCGAAGGACCCTGTGCATCACATCGCGG
CAGTGGCAACGGACTCCGCGGATGATATCAGCTGGGAGCTCTCTGCACTC
TCGCATGCCAGCATAGTCCTGTCCTTGGTTCCGCTGCTCGCATGGTTGAC
GTTCTTCCCCGTGTGGGGTTCATCATTTAGCGGCGTTAATGACCAAGATC
TGCGTGAGGCCTTGTCCATTTGCTCCCTTGTGGGCGTGGGGGCATTCGTT
GTCTCCAGTGCTAGGGCCGTTGTTTCCTCGCTAGGCGTAGATAGACAAAG
CGCAATGGATGTAGTTGTTGCCATCGGCATGGTTCTCTACGCCATGCAGA
AGTGTTTCGTCGTGTACGTTTTGCTGTCGAATCTGGAAAGACTCTGCCCC
AACGTACTCGGCAAGGCCTTGATTGCCTTCTTGTGTCTCGAGGTGGTGTC
GGTCGCTATTGGTGTCGTGGCATTGATTTCGGTTGCATGTCCTCTGCCAC
TATGCGTAGGAGATATGCACCCCTTGCAAAACGACGCTTGAAGGTGTTCT
TCCTCACAACTGTGGTTTTCGAAAGTGGGGCAGAACTCCTCTTCCTTTCC
GTCGGTTACTGCTGGTTAAGACGACACTCAAACCTCAGAACCTCTGTGAA
AACCCTTTCGAAGGACCCTGTGCATCACATCGCGGCAGTGGCAACGGACT
CCGCGGATGATATCAGCTGGGAGCTCTCTGCACTCTCGCATGCCAGCATA
GTCCTGTCCTTGGTTCCGCTGCTCGCATGGTTGACGTTCTTCCCCGTGTG
GGGTTCATCATTTAGCGGCGTTAATGACCAAGATCTGCGTGAGGCCTTGT
CCATTTGCTCCCTTGTGGGCGTGGGGGCATTCGTTGTCTCCAGTGCTAGG
GCCGTTGTTTCCTCGCTAGGCGTAGATAGACAAAGCGCAATGGATGTAGT
TGTTGCCATCGGCATGGTTCTCTACGCCATGCAGAAGTGTTTCGTCGTGT
ACGTTTTGCTGTCGAATCTGGAAAGACTCTGCCCCAACGTACTCGGCAAG
GCCTTGATTGCCTTCTTGTGTCTCGAGGTGGTGTCGGTCGCTATTGGTGT
CGTGGCATTGATTTCGGTTGCATGTCCTCTGCCACTATGCGTAGGAGATA
TGCACCCCTTGCAAAACGACGCTTGA
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