mRNA_L-elsbetiae_contig6333.14985.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6333.14985.1
Unique NamemRNA_L-elsbetiae_contig6333.14985.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig6333.14985.1 vs. uniprot
Match: A0A7J6PGT2_PEROL (Uncharacterized protein n=2 Tax=Perkinsus olseni TaxID=32597 RepID=A0A7J6PGT2_PEROL)

HSP 1 Score: 58.5 bits (140), Expect = 1.130e-8
Identity = 24/41 (58.54%), Postives = 29/41 (70.73%), Query Frame = 1 
Query:    4 HRRALTCRLCQQRFFPASLKFHVKVCAQRHEHVELPCEHCD 126
            HRRA+ C  C Q FFP SL+FH+K C  + +HVELPC  CD
Sbjct:    9 HRRAVPCPSCGQHFFPQSLRFHLKSCVVKQQHVELPCPFCD 49
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BLAST of mRNA_L-elsbetiae_contig6333.14985.1 vs. uniprot
Match: A0A7J6U944_PEROL (Uncharacterized protein n=1 Tax=Perkinsus olseni TaxID=32597 RepID=A0A7J6U944_PEROL)

HSP 1 Score: 58.5 bits (140), Expect = 1.140e-8
Identity = 24/41 (58.54%), Postives = 29/41 (70.73%), Query Frame = 1 
Query:    4 HRRALTCRLCQQRFFPASLKFHVKVCAQRHEHVELPCEHCD 126
            HRRA+ C  C Q FFP SL+FH+K C  + +HVELPC  CD
Sbjct:    9 HRRAVPCPSCGQHFFPQSLRFHLKSCVVKQQHVELPCPFCD 49
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BLAST of mRNA_L-elsbetiae_contig6333.14985.1 vs. uniprot
Match: A0A7J6LKF5_PEROL (Uncharacterized protein n=2 Tax=Perkinsus olseni TaxID=32597 RepID=A0A7J6LKF5_PEROL)

HSP 1 Score: 58.5 bits (140), Expect = 1.140e-8
Identity = 24/41 (58.54%), Postives = 29/41 (70.73%), Query Frame = 1 
Query:    4 HRRALTCRLCQQRFFPASLKFHVKVCAQRHEHVELPCEHCD 126
            HRRA+ C  C Q FFP SL+FH+K C  + +HVELPC  CD
Sbjct:    9 HRRAVPCPSCGQHFFPQSLRFHLKSCVVKQQHVELPCPFCD 49
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BLAST of mRNA_L-elsbetiae_contig6333.14985.1 vs. uniprot
Match: A0A7J6MXE7_PERCH (Uncharacterized protein n=1 Tax=Perkinsus chesapeaki TaxID=330153 RepID=A0A7J6MXE7_PERCH)

HSP 1 Score: 58.2 bits (139), Expect = 1.550e-8
Identity = 24/41 (58.54%), Postives = 29/41 (70.73%), Query Frame = 1 
Query:    4 HRRALTCRLCQQRFFPASLKFHVKVCAQRHEHVELPCEHCD 126
            HRRA+ C  C Q FFP SL+FH+K C  + +HVELPC  CD
Sbjct:    9 HRRAVPCPSCGQNFFPQSLRFHLKSCIVKQQHVELPCPFCD 49
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BLAST of mRNA_L-elsbetiae_contig6333.14985.1 vs. uniprot
Match: A0A7S3IZW6_9SPIT (Hypothetical protein (Fragment) n=1 Tax=Euplotes harpa TaxID=151035 RepID=A0A7S3IZW6_9SPIT)

HSP 1 Score: 53.9 bits (128), Expect = 5.470e-8
Identity = 20/42 (47.62%), Postives = 29/42 (69.05%), Query Frame = 1 
Query:   10 RALTCRLCQQRFFPASLKFHVKVCAQRHEHVELPCEHCDERF 135
            RA+TC++C Q+FFPAS+KFH K C ++ E     C HC ++ 
Sbjct:   10 RAITCKICNQKFFPASMKFHKKECQKKFEGTHSKCTHCGQKI 51
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BLAST of mRNA_L-elsbetiae_contig6333.14985.1 vs. uniprot
Match: A0A7S4NRQ2_GUITH (Hypothetical protein (Fragment) n=1 Tax=Guillardia theta TaxID=55529 RepID=A0A7S4NRQ2_GUITH)

HSP 1 Score: 52.8 bits (125), Expect = 2.710e-7
Identity = 21/43 (48.84%), Postives = 29/43 (67.44%), Query Frame = 1 
Query:   10 RALTCRLCQQRFFPASLKFHVKVCAQRHEHVELPCEHCDERFP 138
            R++TC +C Q+FF ASL FHVK C  + + + +PC  CD  FP
Sbjct:    9 RSVTCTMCGQQFFKASLPFHVKQCRLKTDAIPIPCPGCDREFP 51
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BLAST of mRNA_L-elsbetiae_contig6333.14985.1 vs. uniprot
Match: A0A7S1HGX3_HEMAN (Hypothetical protein (Fragment) n=2 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1HGX3_HEMAN)

HSP 1 Score: 47.8 bits (112), Expect = 5.180e-5
Identity = 20/43 (46.51%), Postives = 28/43 (65.12%), Query Frame = 1 
Query:   10 RALTCRLCQQRFFPASLKFHVKVCAQRHEHVELPCEHCDERFP 138
            RA+TC++C Q FF ASL FH+K C  +   V +PC  C+  +P
Sbjct:    5 RAVTCQMCGQGFFKASLPFHLKQCQIKSAAVPIPCPGCNVEYP 47
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6333.14985.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A7J6PGT2_PEROL1.130e-858.54Uncharacterized protein n=2 Tax=Perkinsus olseni T... [more]
A0A7J6U944_PEROL1.140e-858.54Uncharacterized protein n=1 Tax=Perkinsus olseni T... [more]
A0A7J6LKF5_PEROL1.140e-858.54Uncharacterized protein n=2 Tax=Perkinsus olseni T... [more]
A0A7J6MXE7_PERCH1.550e-858.54Uncharacterized protein n=1 Tax=Perkinsus chesapea... [more]
A0A7S3IZW6_9SPIT5.470e-847.62Hypothetical protein (Fragment) n=1 Tax=Euplotes h... [more]
A0A7S4NRQ2_GUITH2.710e-748.84Hypothetical protein (Fragment) n=1 Tax=Guillardia... [more]
A0A7S1HGX3_HEMAN5.180e-546.51Hypothetical protein (Fragment) n=2 Tax=Hemiselmis... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6333contigL-elsbetiae_contig6333:250..624 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size156
Cds size156
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816699.0059617-CDS-L-elsbetiae_contig6333:249..3301622816699.0059617-CDS-L-elsbetiae_contig6333:249..330Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6333 250..330 -
1691683749.0116146-CDS-L-elsbetiae_contig6333:249..3301691683749.0116146-CDS-L-elsbetiae_contig6333:249..330Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6333 250..330 -
1622816699.01912-CDS-L-elsbetiae_contig6333:549..6241622816699.01912-CDS-L-elsbetiae_contig6333:549..624Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6333 550..624 -
1691683749.0236022-CDS-L-elsbetiae_contig6333:549..6241691683749.0236022-CDS-L-elsbetiae_contig6333:549..624Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6333 550..624 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6333.14985.1prot_L-elsbetiae_contig6333.14985.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6333 250..624 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6333.14985.1

>prot_L-elsbetiae_contig6333.14985.1 ID=prot_L-elsbetiae_contig6333.14985.1|Name=mRNA_L-elsbetiae_contig6333.14985.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=52bp
MHRRALTCRLCQQRFFPASLKFHVKVCAQRHEHVELPCEHCDERFPCTML
KV
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mRNA from alignment at L-elsbetiae_contig6333:250..624-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6333.14985.1 ID=mRNA_L-elsbetiae_contig6333.14985.1|Name=mRNA_L-elsbetiae_contig6333.14985.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=375bp|location=Sequence derived from alignment at L-elsbetiae_contig6333:250..624- (Laminarionema elsbetiae ELsaHSoW15)
ATGCATCGAAGAGCCTTGACCTGTAGGTTGTGCCAGCAAAGGTTCTTTCC
AGCGTCGCTGAAATTCCACGTCAAGGTACGGAACAAATTCCTGCTGTTGG
CGGGAGCACTGGCTGGGTGGGGCACAGCCGTGCACCACACGGTGTAAAAC
AAGTATTTCGACATCACGTGAGATACGCGCGAGCCCATTCCTCTGGTCAT
AAAATTTTTGATGCTCGTGTGTATGCTACAAAGTAGTACATCATATCCCC
CCTCCGGTGTCGTGCACTGCTGGCGATGTGTTACCTTTGTACAGGTGTGC
GCGCAGAGACATGAGCATGTCGAGCTACCATGTGAGCATTGCGACGAGCG
CTTCCCGTGCACAATGCTAAAGGTG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig6333:250..624-

>mRNA_L-elsbetiae_contig6333.14985.1 ID=mRNA_L-elsbetiae_contig6333.14985.1|Name=mRNA_L-elsbetiae_contig6333.14985.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=312bp|location=Sequence derived from alignment at L-elsbetiae_contig6333:250..624- (Laminarionema elsbetiae ELsaHSoW15)
ATGCATCGAAGAGCCTTGACCTGTAGGTTGTGCCAGCAAAGGTTCTTTCC
AGCGTCGCTGAAATTCCACGTCAAGATGCATCGAAGAGCCTTGACCTGTA
GGTTGTGCCAGCAAAGGTTCTTTCCAGCGTCGCTGAAATTCCACGTCAAG
GTGTGCGCGCAGAGACATGAGCATGTCGAGCTACCATGTGAGCATTGCGA
CGAGCGCTTCCCGTGCACAATGCTAAAGGTGGTGTGCGCGCAGAGACATG
AGCATGTCGAGCTACCATGTGAGCATTGCGACGAGCGCTTCCCGTGCACA
ATGCTAAAGGTG
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