mRNA_L-elsbetiae_contig6332.14984.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6332.14984.1
Unique NamemRNA_L-elsbetiae_contig6332.14984.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6332.14984.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6332contigL-elsbetiae_contig6332:7599..8401 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons2
Model size281
Cds size279
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816698.8806653-CDS-L-elsbetiae_contig6332:7600..76421622816698.8806653-CDS-L-elsbetiae_contig6332:7600..7642Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6332 7601..7642 -
1691683748.924454-CDS-L-elsbetiae_contig6332:7600..76421691683748.924454-CDS-L-elsbetiae_contig6332:7600..7642Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6332 7601..7642 -
1622816698.8927681-CDS-L-elsbetiae_contig6332:8164..84011622816698.8927681-CDS-L-elsbetiae_contig6332:8164..8401Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6332 8165..8401 -
1691683748.9422483-CDS-L-elsbetiae_contig6332:8164..84011691683748.9422483-CDS-L-elsbetiae_contig6332:8164..8401Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6332 8165..8401 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6332.14984.1prot_L-elsbetiae_contig6332.14984.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6332 7601..8401 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6332.14984.1

>prot_L-elsbetiae_contig6332.14984.1 ID=prot_L-elsbetiae_contig6332.14984.1|Name=mRNA_L-elsbetiae_contig6332.14984.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=93bp
SHLTNAETSRRTSIFRQRTTKLEYTAVRSLYTMRLYDFPLLFATAWLFVL
LSPMGCADDTNISPAASDEAVVTDIGCREVSSADGMFGSEPSA
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mRNA from alignment at L-elsbetiae_contig6332:7599..8401-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6332.14984.1 ID=mRNA_L-elsbetiae_contig6332.14984.1|Name=mRNA_L-elsbetiae_contig6332.14984.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=803bp|location=Sequence derived from alignment at L-elsbetiae_contig6332:7599..8401- (Laminarionema elsbetiae ELsaHSoW15)
TCTCATCTCACAAACGCTGAGACATCGAGACGGACCTCGATCTTTCGCCA
ACGAACAACTAAGCTTGAATACACAGCAGTGCGCTCCCTCTATACGATGA
GGCTATACGATTTTCCGTTGCTCTTCGCCACGGCATGGCTTTTCGTCCTG
CTCTCGCCGATGGGATGCGCTGACGATACCAACATCTCTCCAGCGGCATC
GGATGAAGCGGTGGTTACCGACATCGGCTGCCGTGAGGTAAGCGGCAATG
CTAGTCTATTTGATTATGTATGACGCTGCATGGGATCGATAGGTATTCCC
CCCCGAGAGACTAGACTAGTCTAGACTGAACCAAGATAACCAGGGGGCGT
ATCCCCCCGCGGTTGGTGATGTTGGCTTGCCCAATTTTGTGTTTCACCTC
GCATAGCATGTAGATAGAGGGGAGCGGAGGGCTCGAGACTAGATGTATCT
GATCTTTTCATCTTTTCTTTTTTCGTTTTGTGGGCCCTCGGGTCCATTAT
TTTTATTTTTATTCTTCAGTATTGTAGCCTAGATCTTACCCTGTCAGGGT
AAGCAATCCTGCCACCACGGGGAGTCGACCGCGTCAGTGCTGGATTAGTA
CGGACTCATGGAGGCGTACTGGATAGAGAGATCAGAATGGTTTTGAATTT
GAAGACAACAACAGCAGCAACACTGCTCTACGCCACATGACCTCTTTCAC
ACCCTGATCATAGTTCCGATTTCGTCCCCCTTCTCCGGTCACACGGTACA
TGTTTCCAGGTTTCTTCTGCCGACGGAATGTTTGGCAGCGAGCCATCAGC
CGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig6332:7599..8401-

>mRNA_L-elsbetiae_contig6332.14984.1 ID=mRNA_L-elsbetiae_contig6332.14984.1|Name=mRNA_L-elsbetiae_contig6332.14984.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=558bp|location=Sequence derived from alignment at L-elsbetiae_contig6332:7599..8401- (Laminarionema elsbetiae ELsaHSoW15)
TCTCATCTCACAAACGCTGAGACATCGAGACGGACCTCGATCTTTCGCCA
ACGAACAACTAAGCTTGAATACACAGCAGTGCGCTCCCTCTATACGATGA
GGCTATACGATTTTCCGTTGCTCTTCGCCACGGCATGGCTTTTCGTCCTG
CTCTCGCCGATGGGATGCGCTGACGATACCAACATCTCTCCAGCGGCATC
GGATGAAGCGGTGGTTACCGACATCGGCTGCCGTGAGTCTCATCTCACAA
ACGCTGAGACATCGAGACGGACCTCGATCTTTCGCCAACGAACAACTAAG
CTTGAATACACAGCAGTGCGCTCCCTCTATACGATGAGGCTATACGATTT
TCCGTTGCTCTTCGCCACGGCATGGCTTTTCGTCCTGCTCTCGCCGATGG
GATGCGCTGACGATACCAACATCTCTCCAGCGGCATCGGATGAAGCGGTG
GTTACCGACATCGGCTGCCGTGAGGTTTCTTCTGCCGACGGAATGTTTGG
CAGCGAGCCATCAGCCGTTTCTTCTGCCGACGGAATGTTTGGCAGCGAGC
CATCAGCC
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