mRNA_L-elsbetiae_contig633.14976.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig633.14976.1
Unique NamemRNA_L-elsbetiae_contig633.14976.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig633.14976.1 vs. uniprot
Match: D7G036_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G036_ECTSI)

HSP 1 Score: 155 bits (392), Expect = 8.650e-43
Identity = 71/95 (74.74%), Postives = 81/95 (85.26%), Query Frame = 3 
Query:  336 MQDKLRVPPDFDGPVRARKCTDIIFTLAIILLWITMTGVGISSVSEGDVGKLLAPTDYEGNLCGWDDGFEDTPNLYYANSFGSGVCVPSCPTESD 620
            MQDKL  PP+FDGPVR RKCTDIIFTLAII++WITMT VGISSV +GDV +LLAPTDYEGNLCG+DDG+ED   LYYAN+ GSGVC  SCP+  +
Sbjct:    1 MQDKLTAPPEFDGPVRDRKCTDIIFTLAIIIMWITMTVVGISSVQQGDVRELLAPTDYEGNLCGFDDGYEDRGKLYYANNVGSGVCEKSCPSNDN 95
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BLAST of mRNA_L-elsbetiae_contig633.14976.1 vs. uniprot
Match: A0A6H5JW76_9PHAE (Choline transporter-like protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW76_9PHAE)

HSP 1 Score: 164 bits (414), Expect = 7.530e-41
Identity = 74/107 (69.16%), Postives = 88/107 (82.24%), Query Frame = 3 
Query:  327 MTGMQDKLRVPPDFDGPVRARKCTDIIFTLAIILLWITMTGVGISSVSEGDVGKLLAPTDYEGNLCGWDDGFEDTPNLYYANSFGSGVCVPSCPTESDDR*RLCAFD 647
            MTGMQDKL   P+FDGPVR RKCTDIIF LAII++WITMT VGISS+ +GDV +LLAPTDYEGNLCG+DDG+ED   LYYAN+ GSGVCV +CP+ +D    +C +D
Sbjct:    1 MTGMQDKLTASPEFDGPVRERKCTDIIFMLAIIIMWITMTAVGISSIQQGDVRELLAPTDYEGNLCGFDDGYEDLGKLYYANNVGSGVCVGTCPSTTDLTEVVCRYD 107
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BLAST of mRNA_L-elsbetiae_contig633.14976.1 vs. uniprot
Match: B7FYN0_PHATC (Choline transporter-like protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7FYN0_PHATC)

HSP 1 Score: 107 bits (266), Expect = 4.240e-21
Identity = 57/121 (47.11%), Postives = 71/121 (58.68%), Query Frame = 3 
Query:  342 DKLRVPPDFDGPVRARKCTDIIFTLAIILLWITMTGVGISSVSEGDVGKLLAPTDYEGNLCGWDDGFEDT--PNLYYANSFGSGVCVPSCPT----ESD---DR*RLCAFDGAFLTTTGWL 677
            DKL  P DFDGP + R CTDI+  LA+I +W+ MTGVGI +V+ GD   +L P DY+GN+CG D G + T  P L Y NS+  GVCV  CP      SD   D   L  ++G F    G L
Sbjct:    8 DKLVAPADFDGPTKDRHCTDILMLLALIAMWVAMTGVGIYAVTNGDYRLVLYPLDYDGNVCGTDFGLDMTEFPYLLYVNSYTGGVCVKECPDLTGKVSDNLTDIGTLVTYNGVFQADNGSL 128
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BLAST of mRNA_L-elsbetiae_contig633.14976.1 vs. uniprot
Match: A0A7S3Y2F1_HETAK (Choline transporter-like protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y2F1_HETAK)

HSP 1 Score: 95.9 bits (237), Expect = 1.870e-17
Identity = 41/93 (44.09%), Postives = 62/93 (66.67%), Query Frame = 3 
Query:  342 DKLRVPPDFDGPVRARKCTDIIFTLAIILLWITMTGVGISSVSEGDVGKLLAPTDYEGNLCGWDDGFEDTPNLYYANSFGSGVCVPSCPTESD 620
            + ++   DFDGPV+ R+CTD+++   ++++WI MT +G  +V  GD+  +L P DY+G  CG  D +ED P+LYY    G+GVCV SCP  +D
Sbjct:   10 EPIQAGHDFDGPVKNRRCTDLLWLGLLLVVWICMTVIGKQAVDNGDIDLILHPVDYQGRSCGVGD-YEDKPDLYYVRFDGTGVCVESCPQTTD 101
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BLAST of mRNA_L-elsbetiae_contig633.14976.1 vs. uniprot
Match: D8LIJ7_ECTSI (Choline transporter-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIJ7_ECTSI)

HSP 1 Score: 91.3 bits (225), Expect = 6.150e-16
Identity = 41/92 (44.57%), Postives = 57/92 (61.96%), Query Frame = 3 
Query:  345 KLRVPPDFDGPVRARKCTDIIFTLAIILLWITMTGVGISSVSEGDVGKLLAPTDYEGNLCGWDDGFEDTPNLYYANSFGSGVCVPSCPTESD 620
            KL  P D +G    R+CTD++F L +IL W+ MT +G+  +S G+   LL   DY+G +CG DDG +D   LYY    G+GVCV  CPT ++
Sbjct:   17 KLAAPDDIEGGAD-RRCTDVLFMLVLILAWLAMTYLGVDGISNGNPDLLLNGIDYDGRICGVDDGVKDKSKLYYIRFDGTGVCVEECPTVTN 107
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BLAST of mRNA_L-elsbetiae_contig633.14976.1 vs. uniprot
Match: A0A6V2WBV2_HETAK (Choline transporter-like protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V2WBV2_HETAK)

HSP 1 Score: 89.4 bits (220), Expect = 2.450e-15
Identity = 39/96 (40.62%), Postives = 59/96 (61.46%), Query Frame = 3 
Query:  342 DKLRVPP---DFDGPVRARKCTDIIFTLAIILLWITMTGVGISSVSEGDVGKLLAPTDYEGNLCGWDDGFEDTPNLYYANSFGSGVCVPSCPTESD 620
            ++L+ P    +++GP   RKCTD++F +AI+  W+ MT VG+ S+  GD   L    DY GN+CG  + + D   +YY    GSGVCV +CP+ +D
Sbjct:   20 ERLKAPAGRDEYEGPTANRKCTDVLFFIAIVATWVCMTIVGVDSIQNGDYAVLTNGIDYNGNICGTGN-YSDYSKMYYVGYSGSGVCVSACPSTTD 114
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BLAST of mRNA_L-elsbetiae_contig633.14976.1 vs. uniprot
Match: A0A6H5L007_9PHAE (Choline transporter-like protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L007_9PHAE)

HSP 1 Score: 87.8 bits (216), Expect = 8.710e-15
Identity = 39/88 (44.32%), Postives = 55/88 (62.50%), Query Frame = 3 
Query:  357 PPDFDGPVRARKCTDIIFTLAIILLWITMTGVGISSVSEGDVGKLLAPTDYEGNLCGWDDGFEDTPNLYYANSFGSGVCVPSCPTESD 620
            P D +G    R+CTD++F L +IL W+ MT +G+  +S G+   LL   DY+G +CG DDG +D   LYY    G+GVCV  CPT ++
Sbjct:    5 PDDIEGGAD-RRCTDVLFMLVLILAWLAMTYLGVDGISNGNPDLLLNGIDYDGRICGVDDGVKDKSKLYYIRFDGTGVCVEECPTVTN 91
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BLAST of mRNA_L-elsbetiae_contig633.14976.1 vs. uniprot
Match: A0A1E1W227_PECGO (Choline transporter-like protein n=1 Tax=Pectinophora gossypiella TaxID=13191 RepID=A0A1E1W227_PECGO)

HSP 1 Score: 72.8 bits (177), Expect = 5.620e-10
Identity = 40/105 (38.10%), Postives = 53/105 (50.48%), Query Frame = 3 
Query:  342 DKLRVPPDFDGPVRARKCTDIIFTLAIILLWITMTGVGISSVSEGDVGKLLAPTDYEGNLCGWDDGFEDTPNLYYANSFGS-------------GVCVPSCPTES 617
            + +R  P FDGP+R R CTD+I+ +  IL       VG  S++ G+V KLLAP D  GN CG D  +E+   L + N                  VCV SCPT +
Sbjct:    7 EPIRYDPHFDGPIRNRSCTDVIWLIIFILFLGVWGYVGYYSITTGNVEKLLAPIDSNGNRCGLDSKYENKKYLVFFNISSCLSPTTPITGCRTPQVCVESCPTRT 111
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BLAST of mRNA_L-elsbetiae_contig633.14976.1 vs. uniprot
Match: A0A078AAA8_STYLE (Choline transporter-like protein n=1 Tax=Stylonychia lemnae TaxID=5949 RepID=A0A078AAA8_STYLE)

HSP 1 Score: 72.4 bits (176), Expect = 6.550e-10
Identity = 34/92 (36.96%), Postives = 48/92 (52.17%), Query Frame = 3 
Query:  369 DGPVRARKCTDIIFTLAIILLWITMTGVGISSVSEGDVGKLLAPTDYEGNLCGWDDGFEDTPNLYY----------ANSFGSGVCVPSCPTE 614
            +GP + RKCTD++F +  +L  I+M G  I     G  GKL AP D +GN+CG+D  + D   ++           +N F S VCV  CP  
Sbjct:   15 NGPAKDRKCTDVLFYILFVLFLISMMGCSIYGYKNGQPGKLFAPLDSDGNICGYDPNYLDYKYMFIWDIDQASKEPSNLFDSAVCVKKCPNR 106
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BLAST of mRNA_L-elsbetiae_contig633.14976.1 vs. uniprot
Match: A7RWE1_NEMVE (Choline transporter-like protein n=3 Tax=Nematostella vectensis TaxID=45351 RepID=A7RWE1_NEMVE)

HSP 1 Score: 70.1 bits (170), Expect = 3.870e-9
Identity = 36/103 (34.95%), Postives = 52/103 (50.49%), Query Frame = 3 
Query:  360 PDFDGPVRARKCTDIIFTLAIILLWITMTGVGISSVSEGDVGKLLAPTDYEGNLCGWDDGFEDT----------------PNLYYANSFGSGVCVPSCPTESD 620
            P+F GP+  R CTDII  L  +   + M  VGI + +EGD+ +LL PTD +G +CG D  + D                 P+L     +   VCV  CPT+++
Sbjct:   15 PEFKGPIEDRSCTDIICCLIFVAYIVGMVVVGIVAFAEGDINRLLLPTDSQGKVCGKDPAYLDKKYLVFFDITKCIPKGIPSLSNPKCYTPQVCVSKCPTKNE 117
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig633.14976.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G036_ECTSI8.650e-4374.74Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JW76_9PHAE7.530e-4169.16Choline transporter-like protein n=1 Tax=Ectocarpu... [more]
B7FYN0_PHATC4.240e-2147.11Choline transporter-like protein n=2 Tax=Phaeodact... [more]
A0A7S3Y2F1_HETAK1.870e-1744.09Choline transporter-like protein n=1 Tax=Heterosig... [more]
D8LIJ7_ECTSI6.150e-1644.57Choline transporter-like protein n=1 Tax=Ectocarpu... [more]
A0A6V2WBV2_HETAK2.450e-1540.63Choline transporter-like protein n=1 Tax=Heterosig... [more]
A0A6H5L007_9PHAE8.710e-1544.32Choline transporter-like protein n=1 Tax=Ectocarpu... [more]
A0A1E1W227_PECGO5.620e-1038.10Choline transporter-like protein n=1 Tax=Pectinoph... [more]
A0A078AAA8_STYLE6.550e-1036.96Choline transporter-like protein n=1 Tax=Stylonych... [more]
A7RWE1_NEMVE3.870e-934.95Choline transporter-like protein n=3 Tax=Nematoste... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig633contigL-elsbetiae_contig633:6133..8019 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score156.0
Seed ortholog evalue9.4e-36
Seed eggNOG ortholog2880.D7G036
Hectar predicted targeting categorysignal anchor
EggNOG OGs2D6PU@1,2T2K5@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Ec32 ortholog descriptionCholine transporter-like
Ec32 orthologEc-12_007070.1
Exons3
Model size1360
Cds size303
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig633.14976.1prot_L-elsbetiae_contig633.14976.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig633 6864..7693 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816698.1595762-UTR-L-elsbetiae_contig633:6132..68631622816698.1595762-UTR-L-elsbetiae_contig633:6132..6863Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig633 6133..6863 -
1691683748.3448787-UTR-L-elsbetiae_contig633:6132..68631691683748.3448787-UTR-L-elsbetiae_contig633:6132..6863Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig633 6133..6863 -
1622816698.219866-UTR-L-elsbetiae_contig633:7693..80191622816698.219866-UTR-L-elsbetiae_contig633:7693..8019Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig633 7694..8019 -
1691683748.3809428-UTR-L-elsbetiae_contig633:7693..80191691683748.3809428-UTR-L-elsbetiae_contig633:7693..8019Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig633 7694..8019 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816698.1775188-CDS-L-elsbetiae_contig633:6863..69791622816698.1775188-CDS-L-elsbetiae_contig633:6863..6979Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig633 6864..6979 -
1691683748.3555055-CDS-L-elsbetiae_contig633:6863..69791691683748.3555055-CDS-L-elsbetiae_contig633:6863..6979Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig633 6864..6979 -
1622816698.192619-CDS-L-elsbetiae_contig633:7298..73381622816698.192619-CDS-L-elsbetiae_contig633:7298..7338Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig633 7299..7338 -
1691683748.364112-CDS-L-elsbetiae_contig633:7298..73381691683748.364112-CDS-L-elsbetiae_contig633:7298..7338Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig633 7299..7338 -
1622816698.2070675-CDS-L-elsbetiae_contig633:7546..76931622816698.2070675-CDS-L-elsbetiae_contig633:7546..7693Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig633 7547..7693 -
1691683748.3724551-CDS-L-elsbetiae_contig633:7546..76931691683748.3724551-CDS-L-elsbetiae_contig633:7546..7693Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig633 7547..7693 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig633.14976.1

>prot_L-elsbetiae_contig633.14976.1 ID=prot_L-elsbetiae_contig633.14976.1|Name=mRNA_L-elsbetiae_contig633.14976.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=101bp
MTGMQDKLRVPPDFDGPVRARKCTDIIFTLAIILLWITMTGVGISSVSEG
DVGKLLAPTDYEGNLCGWDDGFEDTPNLYYANSFGSGVCVPSCPTESDDR
*
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mRNA from alignment at L-elsbetiae_contig633:6133..8019-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig633.14976.1 ID=mRNA_L-elsbetiae_contig633.14976.1|Name=mRNA_L-elsbetiae_contig633.14976.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1887bp|location=Sequence derived from alignment at L-elsbetiae_contig633:6133..8019- (Laminarionema elsbetiae ELsaHSoW15)
GTGCCATCCTCCCAGTCCGAGGCAAATTCTTCGGAGAGAGCGAGAGAGAG
AGAGAGAGGAAGGAGTACGCACACGCATACACGCCCCCGAACGTTGTGCT
TCAGCTGAGTGTGTGACCAAACTGGTCCGGGAGAGGAAGTTGCACAGGAG
TGCTTCTCGTTGTGTGGTGTCATACATACATACACCGGAGAGAGAAGGTT
GCTCCGCGTTAATAAACAGCCTTTGTAGGTAATAGAGGAGTGGCAGAGTG
ACCGCTTCAAGGAGTGAAGGAGTGACAGCTACAAAGGGAGGCTTACAGAG
GAGTGAAGGGAGGGGTTGGAGGGAATATGACCGGGATGCAGGATAAGCTT
CGTGTGCCACCGGACTTTGACGGCCCCGTGAGAGCCAGGAAATGCACCGA
TATCATCTTCACGCTGGCGATCATCCTCTTGTGGATTACGATGACTGGCG
TGGGAATCAGCAGCGTTAGCGAGGTGAGGGGGCGTGTGCCCAAAAAACCG
TCACCATTTTTAGTGTCGTGCCTGAAGTACCGCTGCTGTGTGTATGTGGC
TGGTCCCTGAGTGATCGCGCAGACATAACCTGCTGTTGTAGTGCTGTTGA
TGATGTGTGCAAGCATTTCTCGAACATCCACAAGCCCCCCCCCGCCCTCT
CCTTACCCTCTCTCTCTCTCCTCTCGTTCAGGGCGACGTGGGCAAGCTTT
TGGCACCTACCGACTACGAAGGTACGAGTCTCTCCACAGCCGCGAGTGTT
GCATGACCGCGTAAACTCACATCTCGTCTAACTGACCGACTGACTTGACT
ACTCTATATCTAATCTACAAGCAAATGTGTTCCATTTTGTTCCATTTTGC
TCTCTTCTCTCTTCTCAACGTGTACACTCTGCTGCTTGTTCAAAGAAACA
AAATCTTATCCAACGGGTCAACGGGAGGCAACCACGCAACCACGACAGCA
GCAGTGGCTGTCTCTCTACTTCTCTCGCTTGCGCTTCGATTTTCTCCGAT
GTTGCCTAAACTTGTTCACGATGTTTCGTCTCGTCGACAGGTAACCTCTG
CGGTTGGGACGATGGGTTTGAGGACACGCCCAACCTGTACTACGCCAACA
GCTTCGGCTCCGGCGTTTGCGTGCCGTCTTGCCCGACCGAGTCGGACGAT
AGGTGACGGCTATGTGCGTTTGATGGTGCTTTTCTAACCACCACCGGCTG
GCTATGTCCATCTCAGGCATCTGCCGTATGTTATTTTTGAGTGTTGAACA
ATACGGTTTCTCCCCGGAATACATGTTGTTTGACCTGCAGAGAACTGAAG
GGGAGATGTTGAATCTTCTAATATTTTAGGTGTTTTTCTACTCAGCCGGC
CCATATTACGTCACTAGACTACATGGAATACCGAAAATTCTCACGGAAGT
CCCGTCTCCAATGTGGGCTAGGTTCCACTTTTGATTATCTGCTTATCTCT
CAACATGAGTTACACATATCGGCGGGAACCCGACGCTCAACCCTCCGGCA
TTGTAGGCGGGTGTGGGGAGCCCTCGGCTCTCCAACTCTCCAACTTGTGT
GTAGCCGTCTTTCCTCTACCTGGCGTCGTACCTGTGTTTCCTAGCTTTCT
TTTTTATCCTGCGAGTTGTGTGTACCCTACCTTCTGCTTTTTGTTTTTGT
AGTGCCAGCGAGACGCAAGACCCCTTCGGGATTCAGTTTATGTAGGATCG
ACGCGGGCGCTCATGTACCATACTTTTTTCGGTACGTATACTTTAGTTTT
GAAAGATTCATCAGGTAGTCAAACACGGAACCCTATGCACCCCACATTTG
AGACGGAACTCCGTGGAGTTCCACCGGTATTCCATATAGTGACGTAATTT
TGCAATTGTAATATTGGTCCGGCGGAGTAGAAAAACA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig633:6133..8019-

>mRNA_L-elsbetiae_contig633.14976.1 ID=mRNA_L-elsbetiae_contig633.14976.1|Name=mRNA_L-elsbetiae_contig633.14976.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=606bp|location=Sequence derived from alignment at L-elsbetiae_contig633:6133..8019- (Laminarionema elsbetiae ELsaHSoW15)
ATGACCGGGATGCAGGATAAGCTTCGTGTGCCACCGGACTTTGACGGCCC
CGTGAGAGCCAGGAAATGCACCGATATCATCTTCACGCTGGCGATCATCC
TCTTGTGGATTACGATGACTGGCGTGGGAATCAGCAGCGTTAGCGAGATG
ACCGGGATGCAGGATAAGCTTCGTGTGCCACCGGACTTTGACGGCCCCGT
GAGAGCCAGGAAATGCACCGATATCATCTTCACGCTGGCGATCATCCTCT
TGTGGATTACGATGACTGGCGTGGGAATCAGCAGCGTTAGCGAGGGCGAC
GTGGGCAAGCTTTTGGCACCTACCGACTACGAAGGGCGACGTGGGCAAGC
TTTTGGCACCTACCGACTACGAAGGTAACCTCTGCGGTTGGGACGATGGG
TTTGAGGACACGCCCAACCTGTACTACGCCAACAGCTTCGGCTCCGGCGT
TTGCGTGCCGTCTTGCCCGACCGAGTCGGACGATAGGTGAGTAACCTCTG
CGGTTGGGACGATGGGTTTGAGGACACGCCCAACCTGTACTACGCCAACA
GCTTCGGCTCCGGCGTTTGCGTGCCGTCTTGCCCGACCGAGTCGGACGAT
AGGTGA
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