mRNA_L-elsbetiae_contig6326.14974.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig6326.14974.1 vs. uniprot
Match: A0A6H5JA01_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JA01_9PHAE) HSP 1 Score: 305 bits (781), Expect = 1.020e-87 Identity = 502/803 (62.52%), Postives = 534/803 (66.50%), Query Frame = 1 Query: 1 GEIGKSDLEKLVKDKEATEIKAAEQQKADRVRQEAQTKRQLAAQEKMDAIMVAGAAASIGLVAGGLGDGAFAGGDAPWAPPLGAVALGGLGYAAATADGEIGSTTRAVVGGFVAKLLASLKAAAASAADNAKAAAVNKVDETVASIKAVPVTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAKVKELTALPNKVIDEAVSKVEAVLPTPPA----APKXXXXXXXXXXXXXXXXXXXXXXXASAPAASPAKPPAPPAAKIXXXXXXXXXXXXXXXAKTAXXXXXXXXXXXXXXXXXXXXXXKPSPPPPVAAPVKKMPP--------LSAPLRTKAGAKASSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSSPFGGLFGGNGGSSGKSETSKAATKAPAAAKAPXXXXXXXXXXXXXXXXXKAKA----PSSPFGGLFGGN---------------------------------------------------GGGSSKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXADEKKATPAAPPAPA-KKAPMLSTPLRSAAKPXXXXXXXXXXXXXXXXXXXX-------PAAKKAAPAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXQAGGKAKASAKGAAATGFFKPALAEQLTKKMNEDQLKKLDALTAKYANGGSPTAYVNSAAQLVGQGVVAEILPDLVGSLPQGKQKSDLFTVYSTY 2184 GEI KSDLEKLVK+KEA E++AAEQ++A+ +RQ AQ K Q+AA+EKMDA+MVAGA A++GLVAGGLGDGAFAGGDAPWAPP+GAVALGGLGYAAAT DG +G TR V+GGFVA LLASLK AA+SA DNAK++A KVDETVASIKAVP XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX VKELTA+PNKVI +AVSKVEAVLPTPPA APK XXXXXXXXX XXXXXX XXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXX LSAPLRTK+G KA+S+ XXXXXXXXXXXXXXXXXXXXXXXXX SS PFGGLFGGN K APA KAP XX KAK PSSPFGGLF N GG +K X XXXXXXXXXXXXXXXXXX A PPA A KKAPMLS PLRSA+KP XXX XXXX AAKK APAA XXX AG KA A AKGAAAT FFKPAL +QL+KKMNEDQLKKLDA+TAKYAN GSPTAYVNSAAQLVG+GV+++ILPDLVGSLPQGKQKSDLFTVYSTY Sbjct: 146 GEIAKSDLEKLVKEKEAVELEAAEQRQAETLRQAAQAKAQVAAKEKMDALMVAGATATVGLVAGGLGDGAFAGGDAPWAPPVGAVALGGLGYAAATTDGVVGENTRRVIGGFVAWLLASLKEAASSAVDNAKSSATKKVDETVASIKAVPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTVKELTAIPNKVIGDAVSKVEAVLPTPPAPKPAAPKAXXXXXXXXXSKPAAASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLSAPLRTKSGVKATSAPVAAXXXXXXXXXXXXXXXXXXXXXXXXXPSS-PFGGLFGGNXXXXXXXXXPKPTVAAPAK-KAPPASXXSTAS--------KAKXXXXXPSSPFGGLFXXNXXXXXXPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNGGNGAKPAAPKPAAAAPAKEXPAPAAPKAXXXXXXXXXXXXXXXXXXXXXXXXXXATPPAAAVKKAPMLSAPLRSASKPAXXXPAPKAAPKXXXXAPRVVAKXXXXAAAKKPAPAASGGXXXMFGMFGGGGESKAATSPAP----AGRKAPAPAKGAAATTFFKPALVKQLSKKMNEDQLKKLDAMTAKYANSGSPTAYVNSAAQLVGKGVISDILPDLVGSLPQGKQKSDLFTVYSTY 934
BLAST of mRNA_L-elsbetiae_contig6326.14974.1 vs. uniprot
Match: A0A6U4HT34_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A6U4HT34_9STRA) HSP 1 Score: 67.0 bits (162), Expect = 3.720e-8 Identity = 58/152 (38.16%), Postives = 80/152 (52.63%), Query Frame = 1 Query: 1 GEIGKSDLEKLVKDKEATEIKAAEQQKADRVRQEAQTKRQLAAQEKMD--AIMVAGAAASIGLVAGGLGDGAFAGGDAPWAPPLGAVALGGLGYAAATADGEIGSTTRAVVGGFVAKLLASLKAAAASAADNAKAAAVNKVDETVASIKAVP 450 G+I D EK + +KEA AAE+ KA K ++A ++++D AI A + A+IGLV GGL DGA A GDAPWAP G G YA A D ++G R GG ++ AA ++ AAA ++ D+ A IK +P Sbjct: 57 GKISTEDFEKALVEKEAA--MAAEKAKA-------LEKTRIARKKELDTEAIYAAASGATIGLVTGGLLDGALANGDAPWAPVAGLAVGGAALYAGARLDNKVGEVLRFSFGGLAQGTQKAVTGAATDFSEGVTAAAKSQADKIQADIKGIP 199
BLAST of mRNA_L-elsbetiae_contig6326.14974.1 vs. uniprot
Match: A0A7R9YG73_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YG73_9STRA) HSP 1 Score: 62.8 bits (151), Expect = 8.400e-7 Identity = 52/131 (39.69%), Postives = 71/131 (54.20%), Query Frame = 1 Query: 58 IKAAEQQKADRVRQEAQTKRQLAAQEKMDAIMVAGAAASIGLVAGGLGDGAFAGGDAPWAPPLGAVALGGLGYAAATADGEIGSTTRAVVGGFVAKLLASLKAAAASAADNAKAAAVNKVDETVASIKAVP 450 IK E++ A + + EA K+ A+ + +A VA + A+IGLVAGGL DGA A GDAPWAP +G GGL YA D ++G R GG A++ AA AD A +V+ SI++ P Sbjct: 70 IKMEEERLAAKKKTEAAAKK---AELRKEAAYVAASGATIGLVAGGLLDGALANGDAPWAPIVGLGVGGGLLYAGGNLDNKLGEVLRFSFGGLAQGTQAAVTNAAKGTADAVVQGAKAQVENAKTSIQSAP 197 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6326.14974.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig6326.14974.1 >prot_L-elsbetiae_contig6326.14974.1 ID=prot_L-elsbetiae_contig6326.14974.1|Name=mRNA_L-elsbetiae_contig6326.14974.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=729bp GEIGKSDLEKLVKDKEATEIKAAEQQKADRVRQEAQTKRQLAAQEKMDAIback to top mRNA from alignment at L-elsbetiae_contig6326:2386..11011- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig6326.14974.1 ID=mRNA_L-elsbetiae_contig6326.14974.1|Name=mRNA_L-elsbetiae_contig6326.14974.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=8626bp|location=Sequence derived from alignment at L-elsbetiae_contig6326:2386..11011- (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig6326:2386..11011- >mRNA_L-elsbetiae_contig6326.14974.1 ID=mRNA_L-elsbetiae_contig6326.14974.1|Name=mRNA_L-elsbetiae_contig6326.14974.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=4374bp|location=Sequence derived from alignment at L-elsbetiae_contig6326:2386..11011- (Laminarionema elsbetiae ELsaHSoW15)back to top |