mRNA_L-elsbetiae_contig6324.14969.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig6324.14969.1 vs. uniprot
Match: A0A6H5KMF0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMF0_9PHAE) HSP 1 Score: 415 bits (1066), Expect = 6.180e-132 Identity = 247/393 (62.85%), Postives = 282/393 (71.76%), Query Frame = 2 Query: 2 RVLTGLVAAGFDSIARLGSHRRTHKSLLEWVVHTCPPGRDAKQAVRSELEAMLKTAAGGEREDIGRALRAAKADSFSTDQARRLREARVTGVTCASATIPLLTRPPPASSPAPCNPRAAAGSIHGGS-RNHFTVRAT---TGGVETAG--RRLGGSSGXXXXXXXXXXXXXXXXRARFSGTGAAXXXXXXXXXXXGRRQQGYDIVVLDECSQIIEPMSLLPIAVARPRRLVLVGDPMQLPPPVAHAKVCSHAAIPTGPQQXXXXXXXXXXXXXXXXXXXWLEKANAGRANGDTLEKTLFVRLARLGVAPLVLGRQYRCHPRLSALASRLFYQGRLTDGVAEADRRPLVPGLAPLTLLDAAGRGAESTASGGSIRNDFEARAVAALVTALLRAG 1162 RVL GLV+AGFD IARLGSHRRTHKSLL+ VVH+ PPGRDA++AV+SEL+AMLKTA G ER++IGRAL+A+KA+SF+TDQA+RLREARVTGVTCASAT+PLLTRPP + P P G + GG+ N R T TGG +TAG +R G +G R G G+ X GRR+ GYDIVVLDECSQI+EPMSLLP+AVA+PRRLVLVGDPMQLPPPVA A++ A WLEK NA NGDTLEKTLFVRLA+LGV PL+LGRQYRCHP++SALASRLFYQGRLTDGVA DR PLVPGLAPLTLLDAAGRGAESTA GGSI+N FEARAVA +V +LLRAG Sbjct: 310 RVLMGLVSAGFDDIARLGSHRRTHKSLLDRVVHSSPPGRDAQKAVQSELQAMLKTAVGAERDEIGRALQASKAESFTTDQAKRLREARVTGVTCASATVPLLTRPPRSPRPLP-----RGGVVSGGNGSNSVAARKTGVATGGAKTAGPWKRPAGVAGSNG-------------RRLGGGRGSXXERGWSGGGGEGRRR-GYDIVVLDECSQIVEPMSLLPVAVAQPRRLVLVGDPMQLPPPVARARMPKEA---------------------------WLEKVNARPGNGDTLEKTLFVRLAKLGVQPLLLGRQYRCHPQMSALASRLFYQGRLTDGVAARDRGPLVPGLAPLTLLDAAGRGAESTAPGGSIKNAFEARAVADVVVSLLRAG 656
BLAST of mRNA_L-elsbetiae_contig6324.14969.1 vs. uniprot
Match: D8LH01_ECTSI (Prematurely terminated mRNA decay factor-like n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LH01_ECTSI) HSP 1 Score: 405 bits (1042), Expect = 2.680e-130 Identity = 253/388 (65.21%), Postives = 289/388 (74.48%), Query Frame = 2 Query: 2 RVLTGLVAAGFDSIARLGSHRRTHKSLLEWVVHTCPPGRDAKQAVRSELEAMLKTAAGGEREDIGRALRAAKADSFSTDQARRLREARVTGVTCASATIPLLTRPPPASSPAPCNPRAAAGSIHGGSRNHFTVRATTGGVETAGRRLGGSSGXXXXXXXXXXXXXXXXRARFSGTGAAXXXXXXXXXXXGRRQQGYDIVVLDECSQIIEPMSLLPIAVARPRRLVLVGDPMQLPPPVAHAK-VCSHAAIPTGPQQXXXXXXXXXXXXXXXXXXXWLEKANAGRANGDTLEKTLFVRLARLGVAPLVLGRQYRCHPRLSALASRLFYQGRLTDGVAEADRRPLVPGLAPLTLLDAAGRGAESTASGGSIRNDFEARAVAALVTALLRAG 1162 RVL GLV+AGFD IARLGSHRRTHKSLL+ VVH+ PPGRDA++AV+SEL+AMLKTA G +R++IGRAL+A+KA+SF+TDQ +RLREARVTGVTCASAT+PLLTRPP + P P G + GG+ ++ +V A GV T G + G R G G+A XXXXXG R+ GYDIVVLDE SQI+EPMSLLP+AVA+PRRLVLVGDPMQLPPPVA A+ S XXXXXXXXXX WLEKANA NGDTLEKTLFVRLA+LGV PL+LGRQYRCHP++SALASRLFYQGRLTDGVA DR PLV GLAPLTLLDAAGRGAESTA GGSI+N FEARAVA +V +LLRAG Sbjct: 210 RVLMGLVSAGFDDIARLGSHRRTHKSLLDRVVHSSPPGRDAQKAVQSELQAMLKTAVGADRDEIGRALQASKAESFTTDQTKRLREARVTGVTCASATVPLLTRPPRSPRPLP-----RGGVVSGGNGSNGSVAARKTGVATGGTKTAGP------WKRPAGVAGSNGRLLGGGRGSAGARGWSXXXXXGGRR-GYDIVVLDESSQIVEPMSLLPVAVAQPRRLVLVGDPMQLPPPVARARSTVSAEXXXXXXXXXXXXXXXXXXSQRQMPKDAWLEKANARPGNGDTLEKTLFVRLAKLGVKPLLLGRQYRCHPQMSALASRLFYQGRLTDGVAARDRGPLVSGLAPLTLLDAAGRGAESTAPGGSIKNAFEARAVADVVASLLRAG 585
BLAST of mRNA_L-elsbetiae_contig6324.14969.1 vs. uniprot
Match: A0A2P6VEY4_9CHLO (P-loop containing nucleoside triphosphate hydrolase n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6VEY4_9CHLO) HSP 1 Score: 133 bits (334), Expect = 8.790e-29 Identity = 85/194 (43.81%), Postives = 107/194 (55.15%), Query Frame = 2 Query: 581 QGYDIVVLDECSQIIEPMSLLPIAVARPRRLVLVGDPMQLPPPVAHAKVCSHAAIPTGPQQXXXXXXXXXXXXXXXXXXXWLEKANAGRANGDTLEKTLFVRLARLGVAPLVLGRQYRCHPRLSALASRLFYQGRLTDGVAEADRRPLVPGLAPLTLLDAAGRGAESTASGGSIRNDFEARAVAALVTALLRAG 1162 Q +D+VVLDECSQ++EP+S +P+ A R L+ GDP+QLPP VAH +H A P+GP A AG L + LFVRL LG+ P +L RQYRCHP +S + ++ FY GRL DG R L+PGL L LLD RG E + G S N EA AV ALV L++AG Sbjct: 1033 QRFDVVVLDECSQMVEPLSAVPLLRAGARFLIAAGDPLQLPPVVAHP---AHVA-PSGP-------------------------APAGGGQRHGLLRPLFVRLQALGLPPFLLRRQYRCHPDISCVPNQQFYGGRLIDGCTREQRASLLPGLPSLALLDV--RGQEQYSGGRSASNQAEAEAVVALVERLVQAG 1195
BLAST of mRNA_L-elsbetiae_contig6324.14969.1 vs. uniprot
Match: A0A2K3E7V6_CHLRE (Uncharacterized protein n=2 Tax=Chlamydomonas reinhardtii TaxID=3055 RepID=A0A2K3E7V6_CHLRE) HSP 1 Score: 130 bits (326), Expect = 9.440e-28 Identity = 80/193 (41.45%), Postives = 110/193 (56.99%), Query Frame = 2 Query: 584 GYDIVVLDECSQIIEPMSLLPIAVARPRRLVLVGDPMQLPPPVAHAKVCSHAAIPTGPQQXXXXXXXXXXXXXXXXXXXWLEKANAGRANGDTLEKTLFVRLARLGVAPLVLGRQYRCHPRLSALASRLFYQGRLTDGVAEADRRPLVPGLAPLTLLDAAGRGAESTASGGSIRNDFEARAVAALVTALLRAG 1162 G+ +VVLDECSQ+ EP+ L+P+ A+ R LV GDP QLPP +A ++ P Q ++ + G A D+L + LFVRL +LG AP +L QYRCHPRLS++A+ FY+GRL DGV ADR PL+ GL PL +++ G+ A + S N EA+ V+ +V ALL G Sbjct: 1428 GFTVVVLDECSQMTEPLCLVPLLRAKARFLVAAGDPQQLPPVIASP---ANLTAPAPQHQPGPASGLQWGPGAVGAAGAGSQRGHPGAAT-DSLLRPLFVRLCQLGHAPHLLSYQYRCHPRLSSIANAAFYEGRLRDGVTPADRPPLLVGLPPLVFVESGGQAAVDAYTRSSY-NTQEAQLVSRMVAALLAQG 1615
BLAST of mRNA_L-elsbetiae_contig6324.14969.1 vs. uniprot
Match: A0A835T389_9CHLO (Uncharacterized protein n=1 Tax=Chlamydomonas schloesseri TaxID=2026947 RepID=A0A835T389_9CHLO) HSP 1 Score: 128 bits (321), Expect = 3.940e-27 Identity = 80/193 (41.45%), Postives = 111/193 (57.51%), Query Frame = 2 Query: 584 GYDIVVLDECSQIIEPMSLLPIAVARPRRLVLVGDPMQLPPPVAHAKVCSHAAIPTGPQQXXXXXXXXXXXXXXXXXXXWLEKANAGRANGDTLEKTLFVRLARLGVAPLVLGRQYRCHPRLSALASRLFYQGRLTDGVAEADRRPLVPGLAPLTLLDAAGRGAESTASGGSIRNDFEARAVAALVTALLRAG 1162 G+ +VVLDECSQ+ EP+ L+P+ AR R LV GDP QLPP +A S A++ T P +A +A+ D+L + LFVRL++LG P +L QYRCHPRLS++A+ FY+GRL DG+ ADR PL+P L PL +++ G+ A + S N EA+ V+ +V LL G Sbjct: 1375 GFTVVVLDECSQMTEPLCLVPLLRARARFLVAAGDPQQLPPVIA-----SPASL-TAPHHQPNHPAHH-------------HQARQRQAHADSLLRPLFVRLSQLGHVPHLLSYQYRCHPRLSSIANAAFYEGRLRDGITPADRPPLLPRLPPLVFVESGGQAAVDAYTRSSY-NTQEAQLVSRVVAVLLEQG 1547
BLAST of mRNA_L-elsbetiae_contig6324.14969.1 vs. uniprot
Match: F4PUW4_CAVFA (Prematurely terminated mRNA decay factor-like protein n=1 Tax=Cavenderia fasciculata (strain SH3) TaxID=1054147 RepID=F4PUW4_CAVFA) HSP 1 Score: 124 bits (311), Expect = 9.600e-27 Identity = 74/192 (38.54%), Postives = 104/192 (54.17%), Query Frame = 2 Query: 587 YDIVVLDECSQIIEPMSLLPIAVARPRRLVLVGDPMQLPPPVAHAKVCSHAAIPTGPQQXXXXXXXXXXXXXXXXXXXWLEKANAGRANGDTLEKTLFVRLARLGVAPLVLGRQYRCHPRLSALASRLFYQGRLTDGVAEADRRPLVPGLAPLTLLDAAGRGAESTASGGSIRNDFEARAVAALVTALLRAG 1162 + IV LDECSQI EP+SLLP+ +R RLV VGDP+QL P + H+K H G LEKTL+VRL++LG+ P++L QYRCHPR+SAL+++LFY L DG+ A R PL+ L+P+TL+++ + + G ND EA + +++ L R G Sbjct: 130 FPIVFLDECSQITEPLSLLPLCKSRCERLVAVGDPLQLEPTL-HSKPSQHVLDTGG------------------------------------LEKTLYVRLSKLGLQPVILKTQYRCHPRISALSNKLFYDNALNDGILPASRPPLISNLSPITLIESDIGSEQHDSFTGGFYNDGEANLIFSMIDILTRNG 284
BLAST of mRNA_L-elsbetiae_contig6324.14969.1 vs. uniprot
Match: A0A150GZB2_GONPE (AAA domain-containing protein n=1 Tax=Gonium pectorale TaxID=33097 RepID=A0A150GZB2_GONPE) HSP 1 Score: 124 bits (312), Expect = 4.670e-26 Identity = 81/195 (41.54%), Postives = 112/195 (57.44%), Query Frame = 2 Query: 587 YDIVVLDECSQIIEPMSLLPIAVARPRRLVLVGDPMQLPPPVAHAKVCSHAAIPTGPQQXXXXXXXXXXXXXXXXXXXWLEKANAGRANG---DTLEKTLFVRLARLGVAPLVLGRQYRCHPRLSALASRLFYQGRLTDGVAEADRRPLVPGLAPLTLLDAAGRGAESTASGGSIRNDFEARAVAALVTALLRAG 1162 + +VVLDECSQ+ EP+SL+P+ AR R LV GDP+QLPP +A S A++ P E A A A+ D+L + LFVRL++LG P +L QYRCHP ++++A+ FY GRL DGV+ ADR PL+PGL PL +++ G+ A+ S N EA+ VA V+A+L G Sbjct: 779 FTVVVLDECSQMTEPLSLVPLLRARARYLVAAGDPLQLPPVIA-----SPASLMPAPPPH--------------------ETATATAASDGPLDSLLRPLFVRLSQLGHQPHLLSYQYRCHPMVASIANNAFYGGRLRDGVSAADRGPLLPGLPPLVFVESGGQAQVDGATRSSY-NTAEAQLVARAVSAMLDVG 947
BLAST of mRNA_L-elsbetiae_contig6324.14969.1 vs. uniprot
Match: A0A835VRR1_CHLIN (Uncharacterized protein n=1 Tax=Chlamydomonas incerta TaxID=51695 RepID=A0A835VRR1_CHLIN) HSP 1 Score: 124 bits (312), Expect = 5.280e-26 Identity = 82/206 (39.81%), Postives = 110/206 (53.40%), Query Frame = 2 Query: 584 GYDIVVLDECSQIIEPMSLLPIAVARPRRLVLVGDPMQLPPPVAHAKVCS---HAAIPTGPQQXXXXXXXXXXXXXXXXXXXWLEKANAGRANG----------DTLEKTLFVRLARLGVAPLVLGRQYRCHPRLSALASRLFYQGRLTDGVAEADRRPLVPGLAPLTLLDAAGRGAESTASGGSIRNDFEARAVAALVTALLRAG 1162 G+ +VVLDECSQ+ EP+ L+P+ A+ R LV GDP QLPP +A + H P GP L++ G A G D+L + LFVRL++LG P +L QYRCHPRLS++A+ FY GRL DGV ADR PL+ L PL +++ G+ A + S N EA+ V+ +V ALL G Sbjct: 1436 GFSVVVLDECSQMTEPLCLVPLLRAKARFLVAAGDPQQLPPVIASPATLTAPQHPQHPAGPAHH-------------------LQQRGPGAAAGGTLGHPGAAADSLLRPLFVRLSQLGHVPHLLSYQYRCHPRLSSIANAAFYGGRLRDGVRPADRPPLLAALPPLVFVESGGQAAVDAYTRSSY-NTQEAQLVSRVVAALLGQG 1621
BLAST of mRNA_L-elsbetiae_contig6324.14969.1 vs. uniprot
Match: A0A2V0PIX2_9CHLO (P-loop containing nucleoside triphosphate hydrolase n=1 Tax=Raphidocelis subcapitata TaxID=307507 RepID=A0A2V0PIX2_9CHLO) HSP 1 Score: 124 bits (310), Expect = 8.630e-26 Identity = 86/193 (44.56%), Postives = 105/193 (54.40%), Query Frame = 2 Query: 581 QGYDIVVLDECSQIIEPMSLLPIAVARPRRLVLVGDPMQLPPPVAHAKVCSHAAIPTGPQQXXXXXXXXXXXXXXXXXXXWLEKANAGRANGDTLEKTLFVRLARLGVAPLVLGRQYRCHPRLSALASRLFYQGRLTDGVAEADRRPLVPGLAPLTLLDAAGRGAESTASGGSIRNDFEARAVAALVTALLRA 1159 Q +D+VVLDE SQ+ EP SL+P+ +R R ++ GDP+QLPP +AH + AA XXX A G L + LFVRL LG +P +L QYRCHP LSA+ ++ Y GRL DGV R PL+PGL PL D AG GA S +GGS N EA V LV ALLRA Sbjct: 922 QTFDVVVLDEASQMTEPTSLVPLLRSRCRYMIAAGDPLQLPPVIAHPAHLTAAAX----------------------XXXXXXXXXXXXAAGGLL-RPLFVRLTDLGHSPNLLRWQYRCHPALSAIPNKCIYGGRLADGVTAEQRAPLLPGLPPLAFCDLAG-GAASRGAGGSSSNRSEAGLVVRLVGALLRA 1090
BLAST of mRNA_L-elsbetiae_contig6324.14969.1 vs. uniprot
Match: A0A0D2MWR2_9CHLO (SHSP domain-containing protein n=1 Tax=Monoraphidium neglectum TaxID=145388 RepID=A0A0D2MWR2_9CHLO) HSP 1 Score: 122 bits (307), Expect = 1.870e-25 Identity = 102/193 (52.85%), Postives = 118/193 (61.14%), Query Frame = 2 Query: 581 QGYDIVVLDECSQIIEPMSLLPIAVARPRRLVLVGDPMQLPPPVAHAKVCSHAAIPTGPQQXXXXXXXXXXXXXXXXXXXWLEKANAGRANGDTLEKTLFVRLARLGVAPLVLGRQYRCHPRLSALASRLFYQGRLTDGVAEADRRPLVPGLAPLTLLDAAGRGAESTASGGSIRNDFEARAVAALVTALLRA 1159 Q +D+VVLDE SQ+ EP SL+P+ A R L+ GDP+QLPP +A + I T P XXXXXXXXXXXXXXXXXXX L +TLFVRL +LG P +L QYRCHP LSA+ +R Y GRL DGV A R PL+PGL PL +D AG G GGS N EA V LV ALLRA Sbjct: 603 QKFDVVVLDEASQVTEPTSLVPLLRAHCRYLIAAGDPLQLPPVIASPSALT--LINTQPPXXXXXXXXXXXXXXXXXXXXXXXXXGG-------LGRTLFVRLTQLGHQPHLLRWQYRCHPALSAIPNRCVYGGRLRDGVTAAQRGPLLPGLPPLAFVDVAG-GVAQRGQGGSSSNRGEAVLVVRLVGALLRA 785 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6324.14969.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig6324.14969.1 >prot_L-elsbetiae_contig6324.14969.1 ID=prot_L-elsbetiae_contig6324.14969.1|Name=mRNA_L-elsbetiae_contig6324.14969.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=367bp MLKTAAGGEREDIGRALRAAKADSFSTDQARRLREARVTGVTCASATIPLback to top mRNA from alignment at L-elsbetiae_contig6324:297..7569+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig6324.14969.1 ID=mRNA_L-elsbetiae_contig6324.14969.1|Name=mRNA_L-elsbetiae_contig6324.14969.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=7273bp|location=Sequence derived from alignment at L-elsbetiae_contig6324:297..7569+ (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig6324:297..7569+ >mRNA_L-elsbetiae_contig6324.14969.1 ID=mRNA_L-elsbetiae_contig6324.14969.1|Name=mRNA_L-elsbetiae_contig6324.14969.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2202bp|location=Sequence derived from alignment at L-elsbetiae_contig6324:297..7569+ (Laminarionema elsbetiae ELsaHSoW15)back to top |