mRNA_L-elsbetiae_contig632.14964.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig632.14964.1
Unique NamemRNA_L-elsbetiae_contig632.14964.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig632.14964.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig632contigL-elsbetiae_contig632:15249..15668 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size420
Cds size357
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816696.8873615-UTR-L-elsbetiae_contig632:15248..153111622816696.8873615-UTR-L-elsbetiae_contig632:15248..15311Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig632 15249..15311 +
1691683747.4037783-UTR-L-elsbetiae_contig632:15248..153111691683747.4037783-UTR-L-elsbetiae_contig632:15248..15311Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig632 15249..15311 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816696.9025667-CDS-L-elsbetiae_contig632:15311..156681622816696.9025667-CDS-L-elsbetiae_contig632:15311..15668Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig632 15312..15668 +
1691683747.415169-CDS-L-elsbetiae_contig632:15311..156681691683747.415169-CDS-L-elsbetiae_contig632:15311..15668Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig632 15312..15668 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig632.14964.1prot_L-elsbetiae_contig632.14964.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig632 15312..15668 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig632.14964.1

>prot_L-elsbetiae_contig632.14964.1 ID=prot_L-elsbetiae_contig632.14964.1|Name=mRNA_L-elsbetiae_contig632.14964.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=119bp
MKKTVSGRCVMRREWMLGLRLYITLYVGHISRSRFSSSRQQDRVSEHLRH
LQCQVTRKPAQQLAGDGNANFALLMAMVVGRLTSKSNNTSFRAVFSPSKN
CCNSPIYRRPRVRTVNYR*
back to top

mRNA from alignment at L-elsbetiae_contig632:15249..15668+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig632.14964.1 ID=mRNA_L-elsbetiae_contig632.14964.1|Name=mRNA_L-elsbetiae_contig632.14964.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=420bp|location=Sequence derived from alignment at L-elsbetiae_contig632:15249..15668+ (Laminarionema elsbetiae ELsaHSoW15)
GTCGAAGTGGAGAAGTGAGGCGTATTGACATGTGCACGAGAGAAAAACGG
AAGGGCGCCGGAAATGAAAAAAACGGTGAGCGGACGATGTGTCATGAGGA
GAGAGTGGATGCTTGGGTTGAGGCTCTACATAACTTTGTACGTGGGACAC
ATCTCGCGCAGCAGGTTTTCTTCCTCCCGTCAACAGGACCGCGTGAGTGA
ACACCTGAGACATCTCCAATGTCAGGTAACCCGAAAGCCTGCCCAACAGC
TAGCCGGCGATGGCAACGCCAATTTCGCTCTCTTGATGGCGATGGTTGTT
GGCCGCCTGACCTCAAAAAGCAACAACACTTCCTTTAGGGCTGTATTCTC
GCCAAGCAAAAATTGCTGCAATAGTCCAATATATCGACGACCACGAGTTC
GTACCGTCAACTACAGATAG
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig632:15249..15668+

>mRNA_L-elsbetiae_contig632.14964.1 ID=mRNA_L-elsbetiae_contig632.14964.1|Name=mRNA_L-elsbetiae_contig632.14964.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=714bp|location=Sequence derived from alignment at L-elsbetiae_contig632:15249..15668+ (Laminarionema elsbetiae ELsaHSoW15)
ATGAAAAAAACGGTGAGCGGACGATGTGTCATGAGGAGAGAGTGGATGCT
TGGGTTGAGGCTCTACATAACTTTGTACGTGGGACACATCTCGCGCAGCA
GGTTTTCTTCCTCCCGTCAACAGGACCGCGTGAGTGAACACCTGAGACAT
CTCCAATGTCAGGTAACCCGAAAGCCTGCCCAACAGCTAGCCGGCGATGG
CAACGCCAATTTCGCTCTCTTGATGGCGATGGTTGTTGGCCGCCTGACCT
CAAAAAGCAACAACACTTCCTTTAGGGCTGTATTCTCGCCAAGCAAAAAT
TGCTGCAATAGTCCAATATATCGACGACCACGAGTTCGTACCGTCAACTA
CAGATAGATGAAAAAAACGGTGAGCGGACGATGTGTCATGAGGAGAGAGT
GGATGCTTGGGTTGAGGCTCTACATAACTTTGTACGTGGGACACATCTCG
CGCAGCAGGTTTTCTTCCTCCCGTCAACAGGACCGCGTGAGTGAACACCT
GAGACATCTCCAATGTCAGGTAACCCGAAAGCCTGCCCAACAGCTAGCCG
GCGATGGCAACGCCAATTTCGCTCTCTTGATGGCGATGGTTGTTGGCCGC
CTGACCTCAAAAAGCAACAACACTTCCTTTAGGGCTGTATTCTCGCCAAG
CAAAAATTGCTGCAATAGTCCAATATATCGACGACCACGAGTTCGTACCG
TCAACTACAGATAG
back to top