mRNA_L-elsbetiae_contig6315.14957.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6315.14957.1
Unique NamemRNA_L-elsbetiae_contig6315.14957.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig6315.14957.1 vs. uniprot
Match: A0A6H5J803_9PHAE (Conserved oligomeric Golgi complex subunit 4 n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5J803_9PHAE)

HSP 1 Score: 447 bits (1151), Expect = 5.640e-145
Identity = 237/265 (89.43%), Postives = 248/265 (93.58%), Query Frame = 2
Query:   11 NSNECLVYVNTLEACSNFAVRLRDMLERDASAAFGGGGG-----AGHDAERVMSCLQGLGSTRALFSRAASDCLEEVLNRLRQVLRTVVSSHLGEKSAVSYQLSENQYAANEAEDPFAQALVEYLRHLLEPYRPPGGLSESLFLELLTLVAGYLAKRLEIALRRRLFTQLGGLQLDKDLRCIMGFFTQQAGRGAREPFSRLAQ----MSLLLNLERPQDAVDYWEPGSPLQAQLTSDEVIGVLQQREDFAREDLASLALPESYKG 778
            NSNECLVYVNTLEACS FAVRLR+MLERDASAAFGG        AGHDAERVMSCLQGLGSTRALF+RAASDCLEEVLNRLRQVLRTVVSSHLGEKSAVSYQLSENQYAANEAEDP+A ALVEYLR LLEPYRPPGGLSESLFLELLTLVAGYLAKR+EIAL++RLFTQLGGLQLDKDLRC+MGFFTQQAGRGAREPFSRLAQ    MSLLLNLERPQDA+DYWEPGSPLQAQLT++EV+ VLQQREDFAREDLASL LPESYKG
Sbjct:  634 NSNECLVYVNTLEACSTFAVRLREMLERDASAAFGGXXXXXXXXAGHDAERVMSCLQGLGSTRALFTRAASDCLEEVLNRLRQVLRTVVSSHLGEKSAVSYQLSENQYAANEAEDPYAHALVEYLRLLLEPYRPPGGLSESLFLELLTLVAGYLAKRMEIALKKRLFTQLGGLQLDKDLRCVMGFFTQQAGRGAREPFSRLAQASQGMSLLLNLERPQDAMDYWEPGSPLQAQLTANEVVSVLQQREDFAREDLASLVLPESYKG 898          
BLAST of mRNA_L-elsbetiae_contig6315.14957.1 vs. uniprot
Match: A0A836C9B0_9STRA (Conserved oligomeric Golgi complex subunit 4 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C9B0_9STRA)

HSP 1 Score: 162 bits (411), Expect = 1.870e-40
Identity = 103/246 (41.87%), Postives = 137/246 (55.69%), Query Frame = 2
Query:   23 CLVYVNTLEACSNFAVRLRDMLERDASAAFGGGGGAGHDAERVMSCLQGLGSTRALFSRAASDCLEEVLNRLRQVLRTVVSSHLGEKSAVSYQLSENQYAANEAEDPFAQALVEYLRHLLEPYRPPGGLSESLFLELLTLVAGYLAKRLEIALRRRLFTQLGGLQLDKDLRCIMGFFTQQAGRGAREPFSRLAQMSLLLNLERPQDAVDYWEPGSPLQAQLTSDEVIGVLQQREDFAREDLASLAL 760
            CLVY+N LEAC   A RL   L R+    F  G GA    + +++CL  L      F + +   L    N        +V++    ++ VSY+L+E QYA NEA DP+A  L   L  LL PY PP GLS + F  LL L     A+R+E A RR+ F+QLGGLQLDKD+R +     ++ G   R PF+RL Q++LLL+L+   DA D+W  G  L+  L + EV  VL  REDFA E +A L L
Sbjct:  284 CLVYLNDLEACGQCAARLGAELVREVPETFQEGRGA----QLLLACLGELSGAADAFDQRSQRSLRHPCNT------DLVTTQPRARAQVSYKLTEAQYAVNEASDPWALELATGLLSLLRPYEPPTGLSAAAFARLLALACECAAQRVEAAARRKRFSQLGGLQLDKDVRALAAAAAERGGPALRAPFARLQQIALLLSLDDVVDAADFWHGGGALRQHLAAGEVKEVLALREDFAPESVAELEL 519          
BLAST of mRNA_L-elsbetiae_contig6315.14957.1 vs. uniprot
Match: A0A1J6I8W7_NICAT (Conserved oligomeric Golgi complex subunit 4 n=7 Tax=Solanaceae TaxID=4070 RepID=A0A1J6I8W7_NICAT)

HSP 1 Score: 132 bits (332), Expect = 4.300e-29
Identity = 89/252 (35.32%), Postives = 141/252 (55.95%), Query Frame = 2
Query:   20 ECLVYVNTLEACSNFAVRLRDMLERDASAAFGGGGGAGHDAERVMSCLQGLGSTRALFSRAASDCLEE----VLNRLRQVLRTVVSSHLGEKSAVSYQLSENQYAANEAEDPFAQALVEYLRHLLEPYRPPGGLSESLFLELLTLVAGYLAKRLEIALRRRLFTQLGGLQLDKDLRCIMGFFTQQAGRGAREPFSRLAQMSLLLNLERPQDAVDYW-EPGSPLQAQLTSDEVIGVLQQREDFAREDLASLAL 760
            E    +N ++  S +A++LR  +E   +  F     A  D ERV SCL  L      F +A +  LE+    V  R+R VL TV +        +SY+LSE++YA NE  DP+ Q L+  +   +   +P   ++ + +  L+ LV  ++ KRLE+ + ++ F+QLGGLQLD+D+R ++ +F+    R  R+ F+RL QM+ +LNLE+  + +D+W E   P+  +LT  EV  VL  R DF  E +A+L L
Sbjct:  510 EIATALNNMDVSSEYALKLRHEIEEQCAEVFP----APADRERVKSCLSELNEMSNGFKKALNIGLEQLVATVTPRIRPVLDTVAT--------ISYELSESEYADNEVNDPWVQRLLHAVESNVAWLQPL--MTANNYDSLVHLVIDFIVKRLEVIMMQKRFSQLGGLQLDRDVRALVSYFSNMTQRTVRDKFARLTQMATILNLEKVSEILDFWGENSGPMTWRLTPAEVRRVLSLRVDFKSEAIAALKL 747          
BLAST of mRNA_L-elsbetiae_contig6315.14957.1 vs. uniprot
Match: A0A175YA48_DAUCS (Conserved oligomeric Golgi complex subunit 4 n=1 Tax=Daucus carota subsp. sativus TaxID=79200 RepID=A0A175YA48_DAUCS)

HSP 1 Score: 130 bits (328), Expect = 1.410e-28
Identity = 91/251 (36.25%), Postives = 136/251 (54.18%), Query Frame = 2
Query:   20 ECLVYVNTLEACSNFAVRLRDMLERDASAAFGGGGGAGHDAERVMSCLQGLGSTRALFSRAASDCLEEVLNRLRQVLRTVVSSHLGEKSAVSYQLSENQYAANEAEDPFAQAL---VEYLRHLLEPYRPPGGLSESLFLELLTLVAGYLAKRLEIALRRRLFTQLGGLQLDKDLRCIMGFFTQQAGRGAREPFSRLAQMSLLLNLERPQDAVDYW-EPGSPLQAQLTSDEVIGVLQQREDFAREDLASLAL 760
            E    +N L+  S +A++LR  +E      F     A  D ERV SCL  LG     F +A +D +E+++  +   +R V+ S       +SY+LSE +YA NE  DP+ Q+L   VE     L+P       +  LF+ L   V  ++ KRLE+ + ++ F+QLGGLQLD+D R ++  F     R  R+ F+RL QM+ +LNLE+  + +D+W E   P+  +LT  EV  VL  R DF  E +A+L L
Sbjct:  514 EVATSLNNLDVSSEYALKLRHEIEEQCLEVFS----APADRERVKSCLSELGEMSNSFKKALNDKMEQLVASVTPRIRPVLDS----VGTISYELSEAEYADNEVNDPWVQSLLHDVETNIAWLQPLMTAN--NYDLFVHL---VIDFIVKRLEVIMMQKRFSQLGGLQLDRDARALVSHFNGMTQRTVRDKFARLTQMATILNLEKVSEILDFWGENSGPMTWRLTPAEVRRVLSLRIDFRPEAIAALKL 751          
BLAST of mRNA_L-elsbetiae_contig6315.14957.1 vs. uniprot
Match: A0A2J6KJ81_LACSA (Conserved oligomeric Golgi complex subunit 4 n=8 Tax=Asteraceae TaxID=4210 RepID=A0A2J6KJ81_LACSA)

HSP 1 Score: 130 bits (327), Expect = 1.830e-28
Identity = 90/250 (36.00%), Postives = 138/250 (55.20%), Query Frame = 2
Query:   35 VNTLEACSNFAVRLRDMLERDASAAFGGGGGAGHDAERVMSCLQGLGSTRALFSRAASDCLEE----VLNRLRQVLRTVVSSHLGEKSAVSYQLSENQYAANEAEDPFAQAL---VEYLRHLLEPYRPPGGLSESLFLELLTLVAGYLAKRLEIALRRRLFTQLGGLQLDKDLRCIMGFFTQQAGRGAREPFSRLAQMSLLLNLERPQDAVDYW-EPGSPLQAQLTSDEVIGVLQQREDFAREDLASLAL 760
            +N ++  S +A++LR  +E   +  F   G    D ER+ SCL  LG     F +  +  LE     V +R+R VL TV +        VSY+LSE++YA NE  DP+ Q L   VE     L+P      ++ + +   + LV  ++ KRLE+ + ++ F+QLGGLQLD+D+R ++  F+    R  R+ F+RL QM+ +LNLE+  + +D+W E   P+  +LT  EV  VL  R DF  E +A+L L
Sbjct:  505 LNNMDVSSEYALKLRHEIEEQCAEVFPTPG----DRERIKSCLSELGEMSNGFKKTLNSSLEHLVGTVTHRIRPVLDTVAT--------VSYELSESEYAENEVNDPWVQRLLHTVETNTSWLQPL-----MTANNYDSFVHLVIDFIVKRLELIMMQKRFSQLGGLQLDRDVRALVSHFSGMTQRTVRDKFARLTQMATILNLEKVSEILDFWGENSGPMTWRLTPAEVRRVLGMRVDFKPEAIAALKL 737          
BLAST of mRNA_L-elsbetiae_contig6315.14957.1 vs. uniprot
Match: W1NDY2_AMBTC (Conserved oligomeric Golgi complex subunit 4 n=2 Tax=Amborella trichopoda TaxID=13333 RepID=W1NDY2_AMBTC)

HSP 1 Score: 130 bits (327), Expect = 1.850e-28
Identity = 90/252 (35.71%), Postives = 136/252 (53.97%), Query Frame = 2
Query:   20 ECLVYVNTLEACSNFAVRLRDMLERDASAAFGGGGGAGHDAERVMSCLQGLGSTRALFSRAASDCLEE----VLNRLRQVLRTVVSSHLGEKSAVSYQLSENQYAANEAEDPFAQALVEYLRHLLEPYRPPGGLSESLFLELLTLVAGYLAKRLEIALRRRLFTQLGGLQLDKDLRCIMGFFTQQAGRGAREPFSRLAQMSLLLNLERPQDAVDYW-EPGSPLQAQLTSDEVIGVLQQREDFAREDLASLAL 760
            E    +N ++  S +A++L+  +E   +  F     A  D E+V SCL  LG     F +A S  LE+    V  RLR  L  V S        +SY+LSE +YA NE  DP+ Q L+  +   +   +P   ++ + +   L LV  ++ KRLE+ + ++ FTQLGGLQLD+D R ++  F+    R  R+ F+RL QM+ +LNLE+  + +D+W E   P+  +LT  EV  VL  R DF  E +A+L L
Sbjct:  505 EITTALNNMDVSSEYALKLKQEIEEHCAEVFP----APADREKVKSCLSDLGEVSEGFRQALSSGLEQLAASVTPRLRPTLDAVAS--------ISYELSEAEYAENELNDPWVQNLLHSVETSVSWLQP--SMTSNNYDSFLHLVIDFVVKRLEVIMMQKRFTQLGGLQLDRDTRALVSRFSSMTQRTVRDKFARLTQMATVLNLEKVSEILDFWGENAGPMTWRLTPAEVRRVLGLRTDFKPEAIAALRL 742          
BLAST of mRNA_L-elsbetiae_contig6315.14957.1 vs. uniprot
Match: A0A2U1LKY7_ARTAN (Conserved oligomeric Golgi complex subunit 4 n=1 Tax=Artemisia annua TaxID=35608 RepID=A0A2U1LKY7_ARTAN)

HSP 1 Score: 130 bits (326), Expect = 2.250e-28
Identity = 86/246 (34.96%), Postives = 138/246 (56.10%), Query Frame = 2
Query:   35 VNTLEACSNFAVRLRDMLERDASAAFGGGGGAGHDAERVMSCLQGLGSTRALFSRAASDCLEEVLNRLRQVLRTVVSSHLGEKSAVSYQLSENQYAANEAEDPFAQAL---VEYLRHLLEPYRPPGGLSESLFLELLTLVAGYLAKRLEIALRRRLFTQLGGLQLDKDLRCIMGFFTQQAGRGAREPFSRLAQMSLLLNLERPQDAVDYW-EPGSPLQAQLTSDEVIGVLQQREDFAREDLASLAL 760
            +N ++  S ++++LR  +E   +  F     A +D ER+ SCL  LG     F +A    LE+++  +   +R V+ S     + VSY+LSE +YA NE  DP+ Q L   VE     L+P      ++ + +   + LV  ++ KRLE+ + ++ F+QLGGLQLD+D+R ++  F+    R  R+ F+RL QM+ +LNLE+  + +D+W E   P+  +LT  EV  VL  R DF  E +A+L L
Sbjct:  472 LNNMDVSSEYSLKLRHEIEEQCAEVFP----APNDRERIKSCLSELGEMSNGFKKALVAGLEQLVGTVTHRIRPVLDS----VATVSYELSEEEYAENEVNDPWVQRLLHAVETNSGWLQPL-----MTSNNYDSFVHLVIDFIVKRLEVIMMQKRFSQLGGLQLDRDVRALVSHFSGMTQRTVRDKFARLTQMATILNLEKVSEILDFWGENAGPMTWRLTPAEVRRVLGMRVDFKPEAIAALKL 704          
BLAST of mRNA_L-elsbetiae_contig6315.14957.1 vs. uniprot
Match: UPI001FB14573 (conserved oligomeric Golgi complex subunit 4-like n=1 Tax=Impatiens glandulifera TaxID=253017 RepID=UPI001FB14573)

HSP 1 Score: 130 bits (326), Expect = 2.530e-28
Identity = 81/243 (33.33%), Postives = 139/243 (57.20%), Query Frame = 2
Query:   35 VNTLEACSNFAVRLRDMLERDASAAFGGGGGAGHDAERVMSCLQGLGSTRALFSRAASDCLEEVLNRLRQVLRTVVSSHLGEKSAVSYQLSENQYAANEAEDPFAQALVEYLRHLLEPYRPPGGLSESLFLELLTLVAGYLAKRLEIALRRRLFTQLGGLQLDKDLRCIMGFFTQQAGRGAREPFSRLAQMSLLLNLERPQDAVDYW-EPGSPLQAQLTSDEVIGVLQQREDFAREDLASLAL 760
            +N ++  S +A++L+  +E   +  F   G    D ERV SCL  LG     F +A +  +E+++  +   +R ++ +     + +SY+LSE +YA NE  DP+ Q L+  +   +   +P   ++   +  L+ LV  ++ KRLE+ + ++ F+QLGGLQLD+D+R ++ FF+    R  R+ F+RL QM+ +LNLE+  + +D+W E   P+  +LT  +V  VL  R DF  E +A+L L
Sbjct:  518 LNNIDVSSEYALKLKQEIEEQCAEVFPAPG----DRERVKSCLSELGEMNNSFKKALNAGVEQLVASVTPRVRPLLDN----VATISYELSEAEYADNEVNDPWVQRLLHAVETNVAWLQPSMTINN--YDSLIHLVLDFIVKRLEVIMMQKRFSQLGGLQLDRDIRALVSFFSSMTQRTVRDKFARLTQMATILNLEKVSEILDFWGENSGPMTWRLTPADVRRVLGLRIDFKPEAIAALKL 750          
BLAST of mRNA_L-elsbetiae_contig6315.14957.1 vs. uniprot
Match: A0A314ZC79_PRUYE (Conserved oligomeric Golgi complex subunit 4 n=1 Tax=Prunus yedoensis var. nudiflora TaxID=2094558 RepID=A0A314ZC79_PRUYE)

HSP 1 Score: 126 bits (317), Expect = 4.240e-28
Identity = 86/252 (34.13%), Postives = 137/252 (54.37%), Query Frame = 2
Query:    8 NNSNECLVYVNTLEACSNFAVRLRDMLERDASAAFGGGGGAGHDAERVMSCLQGLGSTRALFSRAASDCLEEVLNRLRQVLRTVVSSHLGEKSAVSYQLSENQYAANEAEDPFAQALVEYLRHLLEPYRPPGGLSESLFLELLTLVAGYLAKRLEIALRRRLFTQLGGLQLDKDLRCIMGFFTQQAGRGAREPFSRLAQMSLLLNLERPQDAVDYW-EPGSPLQAQLTSDEVIGVLQQREDFAREDLASLAL 760
            N   E    +N L+  S + ++L+  +E      F     A  D E+V SCL  LG     F +A +  LE+++  +   LR V+  H+G    +SY+LSE QYA NE  DP+ Q L+  +   +   +P   ++ + +   + LV  ++ KRLE  + ++ F+QLGGLQLD+D R ++  F+    R  R+ F+RL QM+ +LNLE+  + +D+W E   P+  +LT  EV  VL  R DF  E +++L L
Sbjct:  192 NTGTEIATVLNNLDVSSEYVLKLKHEIEEQCLEVFP----APVDGEKVKSCLSELGDMSNTFKQALNAGLEQLVATVAPRLRPVLD-HVG---TISYELSEAQYADNEVNDPWVQRLLHAVETNVAWLQPL--MTANNYDSFVHLVLDFIVKRLEATMIQKRFSQLGGLQLDRDARALVSHFSSMTQRTVRDKFARLTQMATILNLEKVSEILDFWGENSGPMTWRLTPAEVRRVLSLRVDFKPEAISALKL 433          
BLAST of mRNA_L-elsbetiae_contig6315.14957.1 vs. uniprot
Match: A0A200Q2Q0_9MAGN (Conserved oligomeric Golgi complex subunit 4 n=1 Tax=Macleaya cordata TaxID=56857 RepID=A0A200Q2Q0_9MAGN)

HSP 1 Score: 129 bits (324), Expect = 4.510e-28
Identity = 88/252 (34.92%), Postives = 136/252 (53.97%), Query Frame = 2
Query:   20 ECLVYVNTLEACSNFAVRLRDMLERDASAAFGGGGGAGHDAERVMSCLQGLGSTRALFSRAASDCLEE----VLNRLRQVLRTVVSSHLGEKSAVSYQLSENQYAANEAEDPFAQALVEYLRHLLEPYRPPGGLSESLFLELLTLVAGYLAKRLEIALRRRLFTQLGGLQLDKDLRCIMGFFTQQAGRGAREPFSRLAQMSLLLNLERPQDAVDYW-EPGSPLQAQLTSDEVIGVLQQREDFAREDLASLAL 760
            E    +N ++  S + ++LR  +E   +  F     A  D ERV SCL  LG     F +A +  LE+    V  R+R VL TV          +SY+LSE +YA NE  DP+ Q L+  +   +   +P   ++ S +   + L+  ++ KRLE+ + ++ F+QLGGLQLD+D R ++  F+    R  R+ F+RL QM+ +LNLE+  + +D+W E   P+  +LT  EV  VL  R DF  E +A+L L
Sbjct:  508 EIATVLNNMDVSSEYVLKLRHEIEEQCAEVFP----APADRERVKSCLSELGEMSTGFKQALNAGLEQLVATVTPRIRPVLDTV--------GTISYELSEAEYAENEVNDPWVQKLLHAVETNVAWLQP--AMTSSNYDSFVHLIIDFIVKRLEVIMMQKRFSQLGGLQLDRDARALVSHFSGMTQRTVRDKFARLTQMATILNLEKVSEILDFWGENAGPMTWRLTPAEVRRVLGLRVDFKPEAIAALRL 745          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6315.14957.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5J803_9PHAE5.640e-14589.43Conserved oligomeric Golgi complex subunit 4 n=2 T... [more]
A0A836C9B0_9STRA1.870e-4041.87Conserved oligomeric Golgi complex subunit 4 n=1 T... [more]
A0A1J6I8W7_NICAT4.300e-2935.32Conserved oligomeric Golgi complex subunit 4 n=7 T... [more]
A0A175YA48_DAUCS1.410e-2836.25Conserved oligomeric Golgi complex subunit 4 n=1 T... [more]
A0A2J6KJ81_LACSA1.830e-2836.00Conserved oligomeric Golgi complex subunit 4 n=8 T... [more]
W1NDY2_AMBTC1.850e-2835.71Conserved oligomeric Golgi complex subunit 4 n=2 T... [more]
A0A2U1LKY7_ARTAN2.250e-2834.96Conserved oligomeric Golgi complex subunit 4 n=1 T... [more]
UPI001FB145732.530e-2833.33conserved oligomeric Golgi complex subunit 4-like ... [more]
A0A314ZC79_PRUYE4.240e-2834.13Conserved oligomeric Golgi complex subunit 4 n=1 T... [more]
A0A200Q2Q0_9MAGN4.510e-2834.92Conserved oligomeric Golgi complex subunit 4 n=1 T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6315contigL-elsbetiae_contig6315:5469..10051 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score459.9
Seed ortholog evalue7.8e-127
Seed eggNOG ortholog2880.D7FT87
KEGG koko:K20291
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Golgi vesicle prefusion complex stabilization
EggNOG OGsKOG0412@1,KOG0412@2759
Ec32 ortholog descriptionConserved oligomeric Golgi complex, subunit 4
Ec32 orthologEc-06_003700.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131
Exons6
Model size1546
Cds size777
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6315.14957.1prot_L-elsbetiae_contig6315.14957.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6315 6234..10047 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816696.4528024-UTR-L-elsbetiae_contig6315:5468..62331622816696.4528024-UTR-L-elsbetiae_contig6315:5468..6233Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6315 5469..6233 -
1691683747.096867-UTR-L-elsbetiae_contig6315:5468..62331691683747.096867-UTR-L-elsbetiae_contig6315:5468..6233Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6315 5469..6233 -
1622816696.5502021-UTR-L-elsbetiae_contig6315:10047..100511622816696.5502021-UTR-L-elsbetiae_contig6315:10047..10051Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6315 10048..10051 -
1691683747.170335-UTR-L-elsbetiae_contig6315:10047..100511691683747.170335-UTR-L-elsbetiae_contig6315:10047..10051Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6315 10048..10051 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816696.4665694-CDS-L-elsbetiae_contig6315:6233..63171622816696.4665694-CDS-L-elsbetiae_contig6315:6233..6317Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6315 6234..6317 -
1691683747.108506-CDS-L-elsbetiae_contig6315:6233..63171691683747.108506-CDS-L-elsbetiae_contig6315:6233..6317Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6315 6234..6317 -
1622816696.4806273-CDS-L-elsbetiae_contig6315:7067..71601622816696.4806273-CDS-L-elsbetiae_contig6315:7067..7160Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6315 7068..7160 -
1691683747.117854-CDS-L-elsbetiae_contig6315:7067..71601691683747.117854-CDS-L-elsbetiae_contig6315:7067..7160Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6315 7068..7160 -
1622816696.4969852-CDS-L-elsbetiae_contig6315:7915..80021622816696.4969852-CDS-L-elsbetiae_contig6315:7915..8002Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6315 7916..8002 -
1691683747.1301007-CDS-L-elsbetiae_contig6315:7915..80021691683747.1301007-CDS-L-elsbetiae_contig6315:7915..8002Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6315 7916..8002 -
1622816696.5092278-CDS-L-elsbetiae_contig6315:8632..87771622816696.5092278-CDS-L-elsbetiae_contig6315:8632..8777Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6315 8633..8777 -
1691683747.1401622-CDS-L-elsbetiae_contig6315:8632..87771691683747.1401622-CDS-L-elsbetiae_contig6315:8632..8777Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6315 8633..8777 -
1622816696.52544-CDS-L-elsbetiae_contig6315:9136..92851622816696.52544-CDS-L-elsbetiae_contig6315:9136..9285Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6315 9137..9285 -
1691683747.1493194-CDS-L-elsbetiae_contig6315:9136..92851691683747.1493194-CDS-L-elsbetiae_contig6315:9136..9285Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6315 9137..9285 -
1622816696.5389001-CDS-L-elsbetiae_contig6315:9828..100471622816696.5389001-CDS-L-elsbetiae_contig6315:9828..10047Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6315 9829..10047 -
1691683747.158865-CDS-L-elsbetiae_contig6315:9828..100471691683747.158865-CDS-L-elsbetiae_contig6315:9828..10047Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6315 9829..10047 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6315.14957.1

>prot_L-elsbetiae_contig6315.14957.1 ID=prot_L-elsbetiae_contig6315.14957.1|Name=mRNA_L-elsbetiae_contig6315.14957.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=259bp
MNNSNECLVYVNTLEACSNFAVRLRDMLERDASAAFGGGGGAGHDAERVM
SCLQGLGSTRALFSRAASDCLEEVLNRLRQVLRTVVSSHLGEKSAVSYQL
SENQYAANEAEDPFAQALVEYLRHLLEPYRPPGGLSESLFLELLTLVAGY
LAKRLEIALRRRLFTQLGGLQLDKDLRCIMGFFTQQAGRGAREPFSRLAQ
MSLLLNLERPQDAVDYWEPGSPLQAQLTSDEVIGVLQQREDFAREDLASL
ALPESYKG*
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mRNA from alignment at L-elsbetiae_contig6315:5469..10051-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6315.14957.1 ID=mRNA_L-elsbetiae_contig6315.14957.1|Name=mRNA_L-elsbetiae_contig6315.14957.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=4583bp|location=Sequence derived from alignment at L-elsbetiae_contig6315:5469..10051- (Laminarionema elsbetiae ELsaHSoW15)
AAGCATGAACAACAGCAACGAGTGCCTGGTCTACGTGAACACGCTCGAGG CGTGCTCGAACTTCGCGGTGCGGCTCCGCGACATGCTGGAGAGGGATGCC TCCGCGGCGTTTGGTGGGGGCGGCGGAGCCGGGCACGACGCGGAGAGGGT CATGTCGTGCCTGCAGGGGCTGGGGTCCACGAGGGCGCTGTTCTCGAGAG CCGCCAGCGACTGTCTGGAAGAGGTGGGAGCTTGCAGCCGTTTTGATTTC GATTTCGTGGTGGAGTGGGGTCTGGGTGGTGGGTCTCTGCCTACGTGTCT GGTGGTGGGGGAGGAACGCGGGGGAAACAGCCTTGCGTAAGTTTCGTCAT TTTTGTCGAAGTTGTGTGGGAGACGCACGTGTGAGAAAGAAAAAAACGTT TGTGGACGTATACAAAGTGTAGGAGGATACGACCCCATCCGGCGTTGTTA CTCGGGTGGCAAGAAACACACCGTTGGAGATCCGCCTCTCCCGTTGTCGT GTGCTGCATTCCGAGGTTAAGAGACGGAGGGTCTTCGACTCTCCTGTTGC CTCGGAGGCTCACTCTCTCTCTCTCTCCTTGCTAAACATCATGAGAGGAA ACTGTAGCCGCCCCTGGTAAGACGGTGGGTGAATACTAACCACGGCCCGG GCCTCCGTCCTTGACAGGAGCTTGTGTCCATGGTTGCTGTAACTTTCCGC ATTATGTTCTTGCTCTTGGAGGATAGACCCCACCCCCTCCCACCCCGCTT CGCCGTCCCCCTCCAGGTGCTAAACCGCCTGAGACAGGTGCTCCGGACCG TCGTGTCCTCCCACCTCGGAGAGAAGTCCGCCGTGTCCTACCAGCTGAGC GAGAACCAGTACGCCGCGAACGAGGCGGAGGACCCCTTCGCGCAGGCTCT TGTCGAGTACCTCCGGTGAGCGGTATGTTGCTCTGCTGCTGCTGCTCCAG CTGTTGCTGCCGTTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCC GTATCCGCTGTATCCGCTGCTGTTGCTGCTTTTGCTGCTGACCTCGTGCG CTCAGAGAAGGGCCGGTCGTGGCTAGGCGACGAAGGCCACGTTCTCCGCG TTGAGTCCCCCCCCCCCCCCGCCACGCGCTCCTATCCGCCCAAGTGCTTG CCTAGTCCAACCGCACACCGCCTTGAAGAGACCCGAAGCGCAAACGGAAA GGCCCGGGAAACCTATTAAATCTTGATGGGTGTCTTTTTCTCGATACATA CCTTGCTCGATTTTGCGTTCGAAGGCACCTGCTGGAGCCGTACCGGCCGC CGGGCGGGCTGTCGGAGTCCCTCTTCCTCGAGCTCCTGACCCTCGTGGCC GGGTACCTCGCCAAGCGCCTCGAGATCGCGCTGAGGAGGCGCCTTTTCAC GCAGCTTGGGGGACTGCAGGTGGGAAGCAGCGGGGGGTTTGAGCGCAGTT ATTGTTACTGCTGCTGCTGCTACTACTGCTGCGTGCGGTCTATTGCTTGT TTGATCGCCCGGTGCACCTCCAGAGGGAAAAAAAAAGCGAGCACGGGAGC CAGGAAAGCGTAAGAGGTGCTTGACTGGCCGTCTGGTACCGTCGTACGTT TCTACCGGGTACGCCTCTCCACGTTGTCGTTTATCGAGGTTGTAGTCCTG GTGCCCACCGTACTGCTGAAGCACTGCACCTCCAGAAATACGCGCAGCGT TGTAATTCAGCAAGCATCCGAGCTCACGACAGGAAGAAAGGAAGGAAGGG CGTGGCGTTCGTTAGTATGCGGTGGAGAGGCTCCCATCTCCTTCTTTCTT CCGGGCTGCACCCCGAGTTTTGAGCTCCGTCCTCGAGCAGAATCCATTTC CATTACCAAGAGGGGCCTATTGTCGGGGGGGAGAGGGGGGGTAAGCTTGA AGCGTTCGTCATCCCCAGCCAGTTTTCCCCCTGTCCCTGTCGCTCGGCGG TGACGTCTGCTCTGGCAAGCACCCGTAATTATTTTGACCTCCCCCTCCCC CAACCCCCCCCACCCTTTTTCTGTGCGCCGCGATAAACAAACGCTTCAGT TGGACAAGGACCTGCGGTGCATCATGGGCTTCTTTACCCAGCAGGCCGGG CGAGGGGCCCGAGAACCGTTCTCCAGGCTTGCCCAGGCGAGTTAGTTTTA TACAAATAAACAAAGGATCAAAGATGGAACCCTAACCCACACTAGAGCAA AGACTCGATATGGGGTTCAAACGGTATTCCATACAGAGACGTAGTATTTG GCGAAGCGAGCAGAAAAATAACCTAAATATCAGAAGAGTTCAACATCTCC CCTGCAAAGATTTAGATTTGCGAGGTCGGCCAACAATGTTGTTGTTGTTG CTGTTGTTGTTGCTGTCTTCACATAAAAAAAAAACGTTCCGATTTCTCTA TGAGTACTTCCCCATTTGTCCGTACCAATTCAAAACACTTGCCGCGGTCG ATTCCGGTGGTCACAGGCTAACTTGCCCTAAAAGGGTATATACTGAAATG TATGTACATACTGGTACAACAAATGGGTCGTATTTGAGGCATCCTCTGAT AGATGCATCCGTTGACTTTTTCTCTGTTCGGGTTTCCGTCTCATGTGTGC CTTCACTGCTACTTCGGTTGTGTTCCGAACACGTGTGAGCGTTTTTTTAT GCTTGTTTGTGTGTATCGCCACCAAGGCTTCAACAGCCTTGCCCCACGCC TACGGCTACGGCCGTCCCGCCGTGAGCAAGATCACGATGTCGAATTCCTA CTCCATCCATCCACCCTGCTGCGGAACCTTGGACCAACTGTAAACGAATT ATGTAGTTGCTGCTTGGAAACCACGGAGACCCGCCCCCCCCCCTCTTCCC TCCATGGTAACATTTTTGATTCCGAACGAAACGAACTGCAGATGTCGTTG CTGCTGAATCTGGAGCGGCCGCAAGACGCAGTGGACTACTGGGAGCCTGG GTCACCCCTTCAGGCGCAACTTACGTCAGACGAGGCAAGGAAGAACAAAT ACTGGCACCGACAAAAATAAACAAAACCTCTAAGAGTAATAAATAACCGC TGTAAATCTGTTTCAGAGGTTCGAAAACTGCCCTGAAATTTCTGTCTTCA ATGTTTGTCGCGCGTAGTTCTGTCCGAACTGATGAATGCTAAGGCGAGTT AAAGTTGCTAGATGGTCGCTTTCAACTATGCCAGACAGCAGTGAGAGAGA TTTTGAAAACATGCCGGACGACCACGCTTCGTGAAGATGCCCCGAGACCC GCTCTTGTCGGGTTGCGGGCGAACAGGAAGTTGGGTTTCACACAAGTTTG GGTATGACCCCTCCCCACCCCCCCCCTGCATCTTTCTGACGGTGTTGCTT ACCCCCCACCCACGCGACTCTTTCCACCTGGGCCATGCTGTGCTTGATAA AATGGCTATATATCGATATGTAATCGAATTGTCCAACAAAGGGCGTGCCG GTGTGTTGTGTTATGCAACGCACTCGTGGGAGACATGGAACGGCGTTTCG TTCCTTCGGTTTTGCCGACGATAAGCAGCAAACGACAACAGCGTGCAGCG CAAGCGAGTGGCCTTCACCCTCGCTTTCCTTGCAGTCGATACGAAGAAGC TTGACGCCGAAGACGAACCAACGGTTACTCACTCCGATGATCCGACATAT GCCCACTGGTACTGCCTGTGTGTTGCACACGATGGTGTTTTTGCTTCTTT CATTTTATTTTTATTTTTTCCGCTGTCGTGCCAGGTGATCGGCGTGCTCC AGCAGAGGGAGGACTTCGCGCGCGAGGACCTGGCCTCTCTTGCTTTGCCT GAGTCGTACAAGGGCTAGCCTGTTTGCAGTGGCTTGCCCCTTATAGCCTC ATCTTCCTTACCCGAGCGGTAGCGATCAACCAAAAAGCTGACGTTGGGAA ATCCATCTCCAGAGGCGGGAGTCAGCCAGTCTCACCCACAGGATAAAACG TTAGAGTGGCTTTTTTTTTAGGCCGGTGGCCGGTTGGTTGTATTGGGGCT CATGCCCGCGCTTTGGCGATGAGTTGCCGGTGATTATGGTTCATTAATCT TGCGTCTTTTTCCGGTTTATGTAGTGGGATGAAAAGTGCTTGAACCTCTT ATTTGCATTGCAGGTCCATATTTGGATTGGTTGTGGGAATCGCCGCCGCG GGTGGTGTAGCAGAGAGAACTGCGTTAGTGACACCTACCGATTGAATGTG TGGGCGGAAGAGTGCCACACGATACTGCTGTTTTTCGTGAGCAGAATGAC CTTCGTGTGGTGCGGGGGCTGTACATTTGAGGAGGGGGTGAAGGCACGGT TTCCCCGTCGATAATGCCCAACACCTTGCGCTGCCGTCATGTGATGATGC CTCTGGATGTGTCAGTCAGTACAGGATTTTTGGTTGTCATCGGCGATTCT TTATCGCACACGGTCTGATCATGGTCAGAATCCGGTCAGAGCTGCGTAAC CTATTGTAGACTACATATGTAGCATGTCATTGCATTTTTCGACGACCATC AAGGTTTTTCCAACCAGGGACGCATTCTGTGCACAGAACATAGAACCAAT TCGCCCCACCTCCCAACCATACAGGTATAGACT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig6315:5469..10051-

>mRNA_L-elsbetiae_contig6315.14957.1 ID=mRNA_L-elsbetiae_contig6315.14957.1|Name=mRNA_L-elsbetiae_contig6315.14957.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1554bp|location=Sequence derived from alignment at L-elsbetiae_contig6315:5469..10051- (Laminarionema elsbetiae ELsaHSoW15)
ATGAACAACAGCAACGAGTGCCTGGTCTACGTGAACACGCTCGAGGCGTG
CTCGAACTTCGCGGTGCGGCTCCGCGACATGCTGGAGAGGGATGCCTCCG
CGGCGTTTGGTGGGGGCGGCGGAGCCGGGCACGACGCGGAGAGGGTCATG
TCGTGCCTGCAGGGGCTGGGGTCCACGAGGGCGCTGTTCTCGAGAGCCGC
CAGCGACTGTCTGGAAGAGATGAACAACAGCAACGAGTGCCTGGTCTACG
TGAACACGCTCGAGGCGTGCTCGAACTTCGCGGTGCGGCTCCGCGACATG
CTGGAGAGGGATGCCTCCGCGGCGTTTGGTGGGGGCGGCGGAGCCGGGCA
CGACGCGGAGAGGGTCATGTCGTGCCTGCAGGGGCTGGGGTCCACGAGGG
CGCTGTTCTCGAGAGCCGCCAGCGACTGTCTGGAAGAGGTGCTAAACCGC
CTGAGACAGGTGCTCCGGACCGTCGTGTCCTCCCACCTCGGAGAGAAGTC
CGCCGTGTCCTACCAGCTGAGCGAGAACCAGTACGCCGCGAACGAGGCGG
AGGACCCCTTCGCGCAGGCTCTTGTCGAGTACCTCCGGTGCTAAACCGCC
TGAGACAGGTGCTCCGGACCGTCGTGTCCTCCCACCTCGGAGAGAAGTCC
GCCGTGTCCTACCAGCTGAGCGAGAACCAGTACGCCGCGAACGAGGCGGA
GGACCCCTTCGCGCAGGCTCTTGTCGAGTACCTCCGGCACCTGCTGGAGC
CGTACCGGCCGCCGGGCGGGCTGTCGGAGTCCCTCTTCCTCGAGCTCCTG
ACCCTCGTGGCCGGGTACCTCGCCAAGCGCCTCGAGATCGCGCTGAGGAG
GCGCCTTTTCACGCAGCTTGGGGGACTGCAGGCACCTGCTGGAGCCGTAC
CGGCCGCCGGGCGGGCTGTCGGAGTCCCTCTTCCTCGAGCTCCTGACCCT
CGTGGCCGGGTACCTCGCCAAGCGCCTCGAGATCGCGCTGAGGAGGCGCC
TTTTCACGCAGCTTGGGGGACTGCAGTTGGACAAGGACCTGCGGTGCATC
ATGGGCTTCTTTACCCAGCAGGCCGGGCGAGGGGCCCGAGAACCGTTCTC
CAGGCTTGCCCAGTTGGACAAGGACCTGCGGTGCATCATGGGCTTCTTTA
CCCAGCAGGCCGGGCGAGGGGCCCGAGAACCGTTCTCCAGGCTTGCCCAG
ATGTCGTTGCTGCTGAATCTGGAGCGGCCGCAAGACGCAGTGGACTACTG
GGAGCCTGGGTCACCCCTTCAGGCGCAACTTACGTCAGACGAGATGTCGT
TGCTGCTGAATCTGGAGCGGCCGCAAGACGCAGTGGACTACTGGGAGCCT
GGGTCACCCCTTCAGGCGCAACTTACGTCAGACGAGGTGATCGGCGTGCT
CCAGCAGAGGGAGGACTTCGCGCGCGAGGACCTGGCCTCTCTTGCTTTGC
CTGAGTCGTACAAGGGCTAGGTGATCGGCGTGCTCCAGCAGAGGGAGGAC
TTCGCGCGCGAGGACCTGGCCTCTCTTGCTTTGCCTGAGTCGTACAAGGG
CTAG
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