mRNA_L-elsbetiae_contig631.14953.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig631.14953.1 vs. uniprot
Match: A0A6H5KCA4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCA4_9PHAE) HSP 1 Score: 573 bits (1478), Expect = 2.000e-198 Identity = 350/531 (65.91%), Postives = 381/531 (71.75%), Query Frame = 1 Query: 1 MGRDLTAVFTSSLVLLLCPRPDAFVPSPKL-VKFTALPPSP-DVLGNLPWII---PPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXT-DAPQSVA-FRVLRGGRGNTLGDDGGGSSRRRPEADLVEVSLDQGVGXXXXXXXXXXXXXLVNAAENLRDFLFLVRSSQPGSIGEELQRRGVRVFPEEAFVDDAGVEAEGGGAAGARGRAAEDLSRFSLVGWGG--PLPLDTAVTDLPKDEEGRVRLVLWDPCGPEHPLARAVGGGPGEQASIEVLNFLLDGDGAR-DGGGGXXXXXXXXXXXXXXXXXXCSRGYGGDFDESRSAVVFRDWFTEEQQQVIADALAAQMFDEDDGEGPGLAVDREHFPLLRDRAALAAVGDGMLSALSSDRFSGQVGGRAPPVPTRANREFNAVCYGAQAKMQEHRDTWKEWTLIISIGNTIPFDLGTCQGSPDVRLELASGEGLLFNGYELFHEVHGVRHGTAPAFWENHALSVKGGFARVGFLSMKSFNSKGVSAPTWGPERGALA 1563 MGRDLTA+FTSSLV+LLCP PDAFVPS ++ +A PP P + LP P XXXXXXXXXXXXXXXXXXXXXT + P SV FRVLRGG ++ PEADLVEVSLD+ + N ++LR+FLFLVRSSQPGSIGE+LQRRGVRVFPEEAF D EAE VGW G PLPLDT +T+LP+D EGRVRLVLWDPCGP+HPL RAV P + AS+EVLNFLL GD R DGG G CS GYG DFDESRSAVVFR WFT EQQQVIAD+LA+Q+F EDD EGPGL VDREHFPLLRDRA LAAVGD MLSALSSDRFSG+VGGR PPVPTRANREFNAVCYGAQAKMQEHRDTWKEWTLI+SIGNTIPFDLG +G PD+RLELASGEGLLFNGYELFHEVHGV+ GTAPAFWE HALS KGGFARVGFLSMKSFNSKGVSAPTWG E+G+ A Sbjct: 1 MGRDLTAIFTSSLVVLLCPGPDAFVPSARIGPPLSAAPPRPRHRVEGLPLTRRTRPSLPCTRSSAQQQADNRXXXXXXXXXXXXXXXXXXXXXTANGPASVVRFRVLRGGNPRD------NAAAATPEADLVEVSLDR----------PDSGGGMANNPQDLREFLFLVRSSQPGSIGEDLQRRGVRVFPEEAFAD---AEAE--------------------VGWAGGRPLPLDTPMTELPRDGEGRVRLVLWDPCGPDHPLVRAVSVEPSKDASVEVLNFLLPGDRRRHDGGEGTAGDGGG-----------CSSGYGRDFDESRSAVVFRKWFTVEQQQVIADSLASQIFAEDDDEGPGLDVDREHFPLLRDRAGLAAVGDSMLSALSSDRFSGEVGGRDPPVPTRANREFNAVCYGAQAKMQEHRDTWKEWTLIVSIGNTIPFDLGMSKGRPDIRLELASGEGLLFNGYELFHEVHGVKPGTAPAFWETHALSAKGGFARVGFLSMKSFNSKGVSAPTWGVEKGSSA 481
BLAST of mRNA_L-elsbetiae_contig631.14953.1 vs. uniprot
Match: D7FS11_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FS11_ECTSI) HSP 1 Score: 547 bits (1409), Expect = 6.070e-188 Identity = 296/433 (68.36%), Postives = 318/433 (73.44%), Query Frame = 1 Query: 268 DAPQSVA-FRVLRGGRGNTLGDDGGGSSRRRPEADLVEVSLDQGVGXXXXXXXXXXXXXLVNAAENLRDFLFLVRSSQPGSIGEELQRRGVRVFPEEAFVDDAGVEAEGGGAAGARGRAAEDLSRFSLVGWGG--PLPLDTAVTDLPKDEEGRVRLVLWDPCGPEHPLARAVGGGPGEQASIEVLNFLLDGDGAR-DGGGGXXXXXXXXXXXXXXXXXXCSRGYGGDFDESRSAVVFRDWFTEEQQQVIADALAAQMFDEDDGEGPGLAVDREHFPLLRDRAALAAVGDGMLSALSSDRFSGQVGGRAPPVPTRANREFNAVCYGAQAKMQEHRDTWKEWTLIISIGNTIPFDLGTCQGSPDVRLELASGEGLLFNGYELFHEVHGVRHGTAPAFWENHALSVKGGFARVGFLSMKSFNSKGVSAPTWGPERG 1554 + P SV FRVLRGG N + PEADLVEVSLD+ + N ++LR+FLFLVRSSQPGSIGE+LQRRGVRVFPEEAF D G S VGW G PLPLDT +T+LP+D EGRVRLVLWDPCGP HPL RAV P + AS+ VLNFLL D R DGG G CS GYG DF+ESRSAVVFR WFT EQQQVIAD+LA+QMF EDD EGPGL VDREHFPLLRDRAALAAVGD MLSALSSDRFSG+VGGR PPVPTRANREFNAVCYGAQAKMQEHRDTWKEWTLI+SIGNTIPFDLG QG PD+RLELASGEGLLFNGYELFHEVHGV+ GTAPAFWENHAL+ KGGFARVGFLSMKSFNSKGVSAPTWG E+G Sbjct: 78 NGPASVVRFRVLRGG--NPRDNAAAXXXAATPEADLVEVSLDR----------PDSGGGMANNPQDLREFLFLVRSSQPGSIGEDLQRRGVRVFPEEAFADAEAELGAGXXXXXXXXXXXXGEEGLSGVGWTGGRPLPLDTPMTELPRDGEGRVRLVLWDPCGPTHPLVRAVSVEPSKDASVMVLNFLLPEDSRRHDGGEGTAGEGGG-----------CSSGYGSDFNESRSAVVFRKWFTVEQQQVIADSLASQMFAEDDDEGPGLDVDREHFPLLRDRAALAAVGDSMLSALSSDRFSGEVGGRDPPVPTRANREFNAVCYGAQAKMQEHRDTWKEWTLIVSIGNTIPFDLGVSQGRPDIRLELASGEGLLFNGYELFHEVHGVKPGTAPAFWENHALNAKGGFARVGFLSMKSFNSKGVSAPTWGVEKG 487 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig631.14953.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig631.14953.1 >prot_L-elsbetiae_contig631.14953.1 ID=prot_L-elsbetiae_contig631.14953.1|Name=mRNA_L-elsbetiae_contig631.14953.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=528bp MGRDLTAVFTSSLVLLLCPRPDAFVPSPKLVKFTALPPSPDVLGNLPWIIback to top mRNA from alignment at L-elsbetiae_contig631:16690..23386+ Legend: CDSpolypeptideUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig631.14953.1 ID=mRNA_L-elsbetiae_contig631.14953.1|Name=mRNA_L-elsbetiae_contig631.14953.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=6697bp|location=Sequence derived from alignment at L-elsbetiae_contig631:16690..23386+ (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig631:16690..23386+ >mRNA_L-elsbetiae_contig631.14953.1 ID=mRNA_L-elsbetiae_contig631.14953.1|Name=mRNA_L-elsbetiae_contig631.14953.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=3168bp|location=Sequence derived from alignment at L-elsbetiae_contig631:16690..23386+ (Laminarionema elsbetiae ELsaHSoW15)back to top |