mRNA_L-elsbetiae_contig631.14952.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig631.14952.1 vs. uniprot
Match: D7FS10_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FS10_ECTSI) HSP 1 Score: 591 bits (1523), Expect = 3.540e-205 Identity = 349/485 (71.96%), Postives = 385/485 (79.38%), Query Frame = 1 Query: 133 DRHIYHTSDGGDERSKTVPSPPNGRGSSRLSWSPRHRKIKTTAVAGV-SGERRLSLYDVLTGEAPLPPPRGEKPDAAGAAAS---------GVMSGGRLHGNRYSDGGGGDESGIVPLGGGARRASIFDRIADVVFNEEQKDQDPVDAVAIRTELEDEFSVSFREGAMGMTLSMNSDTRDAVVGKIVEQGQAFRAGVQTDDFVVGVGEHSVSSYGTVLAFMNIMGRPIELHFRKADPSSGKGGXXXXXXXXXXXXXXXXXXXXXXSAAAPEGFPSTS---MSKPGRMPMRGSLERARGDSLSRMFKGA-GTNSGGGKAPISPISPRTSSRVSELGALGHEVASSDSGFSQKMEHGVVVTKYGKKGTAAQRVLYLDSASMSVAWRDLDARSPGHSRSTSFTNIIKGKREALALAHLIEVVAGDDPDPTRPSENGSAMLREHCDESLLERSFALQFKERSLEMTCDSHAEMRQLVAGFRDLRDQYGQ 1545 DR + +G ++ + P P +S L WSPRHRK+ ++ VA SGERRLSLYDVLTGEAPLPP RG D A A A+ G+ SGG G+VPLGGGARRASIFDRIADVVFNEEQK QDPVDA+A+R+ELEDEF VSFREGAMGMTLSM+ DTRDA+VGKIVEQGQAFRAG+QTDD V+GVGE++VSSYGTVLAFMNIMGRPIELHFRK+D SG G XXXXXXX X XXXXXXXXXXSAA PEGF +T +SK G P+RG+LE RGDSLSR KGA G S GG AP SPISPR+ +VS LG EVASSD+GFS+KMEHGVVVTKYGKKG AAQR+LYLD SMSVAWRDLDARSPGHSRS+S TNIIKGKREALALAHL+EV+AGDDPDPTRPSE GSAMLREHCDESLLERSFALQFKERSLEMTCDSHAEMRQLVAGFRDL+ QYG+ Sbjct: 51 DRSVNDKVEGASKQPREEPVP-----TSSLRWSPRHRKMNSSTVAAEGSGERRLSLYDVLTGEAPLPPTRGGLRDTASAEAASTTRREVGRGLRSGGSXXXXXXXX-----XXGVVPLGGGARRASIFDRIADVVFNEEQKKQDPVDAIAVRSELEDEFRVSFREGAMGMTLSMDPDTRDAIVGKIVEQGQAFRAGIQTDDLVIGVGENTVSSYGTVLAFMNIMGRPIELHFRKSDKGSGDGXXXXXXXXISAXHXXXXXXXXXXSAAKPEGFRATKAGGVSKSG--PIRGNLEGTRGDSLSRKLKGAAGVKSAGGIAPRSPISPRSQGKVSGFSGLGREVASSDAGFSEKMEHGVVVTKYGKKGAAAQRLLYLDGVSMSVAWRDLDARSPGHSRSSSLTNIIKGKREALALAHLLEVIAGDDPDPTRPSEKGSAMLREHCDESLLERSFALQFKERSLEMTCDSHAEMRQLVAGFRDLQKQYGR 523
BLAST of mRNA_L-elsbetiae_contig631.14952.1 vs. uniprot
Match: A0A835YTV8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YTV8_9STRA) HSP 1 Score: 70.5 bits (171), Expect = 7.160e-9 Identity = 44/108 (40.74%), Postives = 60/108 (55.56%), Query Frame = 1 Query: 538 VDAVAIRTELEDEFSVSFREGAMGMTLSMNSDTRDAVVGKIVEQGQAFRAGVQTDDFVVGVGEHSVSS-----------------YGTVLAFMNIMGRPIELHFRKAD 810 VD A+R L EFSV F EG++GM+L + + A V K+VE+GQA GV+ D V VG+ +S YGT LAF+NI+GRP+ L F+K + Sbjct: 1211 VDWSALRRALPKEFSVEFNEGSIGMSL-VRTAADTAEVSKVVERGQAHTGGVKAGDVVSAVGDSVATSMNXXXXXXXXXXXXXXXYGTTLAFLNILGRPVTLWFQKGE 1317
BLAST of mRNA_L-elsbetiae_contig631.14952.1 vs. uniprot
Match: A0A6U1C867_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A6U1C867_9STRA) HSP 1 Score: 57.8 bits (138), Expect = 2.150e-5 Identity = 45/148 (30.41%), Postives = 71/148 (47.97%), Query Frame = 1 Query: 1132 FSQKMEHGVVVTKYGKKGTAAQRVLYLDSASMSVAWR-----DLDARSP-GHSRSTSFTNIIKGKREALALAHLIEVVAGDDPDPTRPSENGSAMLREHCDESLLERSF-------ALQFKERSLEMTCDSHAEMRQLVAGFRDLRDQ 1536 F +K+E+GV V K+ ++G AA R+L L S+ W D R G S F+ K ++ L L EV G+ PDP P + G+ LR H + R +L F +R++++ +S A+ + L GF LR++ Sbjct: 169 FKEKLENGVQVVKFNRRGQAAFRLLVLKEDGRSLTWSVPRGTQADGRLGFGQSVRRKFS----AKSDSFDLRSLSEVRLGEAPDPAFPGKFGTETLRMHASKYAQIRQMQEHGLCVSLIFPDRTVDLGSNSQAQRQFLTRGFGLLRNR 312 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig631.14952.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig631.14952.1 >prot_L-elsbetiae_contig631.14952.1 ID=prot_L-elsbetiae_contig631.14952.1|Name=mRNA_L-elsbetiae_contig631.14952.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=389bp MSGGRLHGNRYSDGGGGDESGIVPLGGGARRASIFDRIADVVFNEEQKDQback to top mRNA from alignment at L-elsbetiae_contig631:10175..14533- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig631.14952.1 ID=mRNA_L-elsbetiae_contig631.14952.1|Name=mRNA_L-elsbetiae_contig631.14952.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=4359bp|location=Sequence derived from alignment at L-elsbetiae_contig631:10175..14533- (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig631:10175..14533- >mRNA_L-elsbetiae_contig631.14952.1 ID=mRNA_L-elsbetiae_contig631.14952.1|Name=mRNA_L-elsbetiae_contig631.14952.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2334bp|location=Sequence derived from alignment at L-elsbetiae_contig631:10175..14533- (Laminarionema elsbetiae ELsaHSoW15)back to top |