mRNA_L-elsbetiae_contig631.14951.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig631.14951.1
Unique NamemRNA_L-elsbetiae_contig631.14951.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig631.14951.1 vs. uniprot
Match: D7G047_ECTSI (Topo_C_assoc domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G047_ECTSI)

HSP 1 Score: 78.2 bits (191), Expect = 1.840e-16
Identity = 35/43 (81.40%), Postives = 39/43 (90.70%), Query Frame = 1 
Query:    1 QVFAKTLRDKFVWAMNVPPDWSFSYETLLNSKQSALDVPPLPG 129
            +VFAKTL++KFVWAMNVPPDW+FSYETL NSKQS LDVP  PG
Sbjct:   19 KVFAKTLQNKFVWAMNVPPDWNFSYETLYNSKQSVLDVPRPPG 61
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BLAST of mRNA_L-elsbetiae_contig631.14951.1 vs. uniprot
Match: D7G042_ECTSI (TOPEUc domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G042_ECTSI)

HSP 1 Score: 79.7 bits (195), Expect = 3.360e-15
Identity = 36/48 (75.00%), Postives = 40/48 (83.33%), Query Frame = 1 
Query:    1 QVFAKTLRDKFVWAMNVPPDWSFSYETLLNSKQSALDVPPLPGSGKKK 144
            +VFAKTL++KFVWAMNVPPDW+FSYETL NSKQS LDVP  PG    K
Sbjct:  937 RVFAKTLQNKFVWAMNVPPDWNFSYETLYNSKQSVLDVPRPPGGASPK 984
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BLAST of mRNA_L-elsbetiae_contig631.14951.1 vs. uniprot
Match: A0A6H5K298_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K298_9PHAE)

HSP 1 Score: 71.2 bits (173), Expect = 1.840e-12
Identity = 31/40 (77.50%), Postives = 34/40 (85.00%), Query Frame = 1 
Query:   10 AKTLRDKFVWAMNVPPDWSFSYETLLNSKQSALDVPPLPG 129
            ++ LRDKF WAMNVPPDW+FSYETL NSKQS LDVP  PG
Sbjct:   93 SRRLRDKFAWAMNVPPDWNFSYETLYNSKQSVLDVPRPPG 132
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BLAST of mRNA_L-elsbetiae_contig631.14951.1 vs. uniprot
Match: A0A836C9X0_9STRA (DNA topoisomerase I n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C9X0_9STRA)

HSP 1 Score: 58.9 bits (141), Expect = 6.510e-8
Identity = 25/39 (64.10%), Postives = 29/39 (74.36%), Query Frame = 1 
Query:    1 QVFAKTLRDKFVWAMNVPPDWSFSYETLLNSKQSALDVP 117
            ++FAKTLRDKFVWAMNVPPDW F +ETL      + D P
Sbjct:  631 RIFAKTLRDKFVWAMNVPPDWRFDFETLRAVTAESSDEP 669
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig631.14951.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7G047_ECTSI1.840e-1681.40Topo_C_assoc domain-containing protein n=1 Tax=Ect... [more]
D7G042_ECTSI3.360e-1575.00TOPEUc domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A6H5K298_9PHAE1.840e-1277.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A836C9X0_9STRA6.510e-864.10DNA topoisomerase I n=1 Tax=Tribonema minus TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig631contigL-elsbetiae_contig631:221..532 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score80.5
Seed ortholog evalue5.1e-13
Seed eggNOG ortholog2880.D7G042
Preferred nameTOP1
KEGG koko:K03163
Hectar predicted targeting categoryother localisation
GOsGO:0000166,GO:0000228,GO:0000932,GO:0000976,GO:0000977,GO:0000978,GO:0000987,GO:0001012,GO:0001067,GO:0001650,GO:0003674,GO:0003676,GO:0003677,GO:0003682,GO:0003690,GO:0003697,GO:0003824,GO:0003916,GO:0003917,GO:0004672,GO:0004674,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005657,GO:0005694,GO:0005730,GO:0005737,GO:0006139,GO:0006259,GO:0006260,GO:0006265,GO:0006325,GO:0006338,GO:0006464,GO:0006468,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0006996,GO:0007059,GO:0007623,GO:0008144,GO:0008150,GO:0008152,GO:0008219,GO:0009058,GO:0009059,GO:0009330,GO:0009987,GO:0010468,GO:0012501,GO:0016043,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0016853,GO:0017076,GO:0018105,GO:0018193,GO:0018209,GO:0019222,GO:0019538,GO:0019904,GO:0030554,GO:0031298,GO:0031974,GO:0031981,GO:0032501,GO:0032553,GO:0032555,GO:0032559,GO:0032922,GO:0032991,GO:0032993,GO:0034641,GO:0034645,GO:0035639,GO:0035770,GO:0036094,GO:0036211,GO:0036464,GO:0042221,GO:0042493,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043565,GO:0043596,GO:0044212,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044452,GO:0044454,GO:0044464,GO:0046483,GO:0048511,GO:0050789,GO:0050896,GO:0051276,GO:0060255,GO:0065007,GO:0070013,GO:0071103,GO:0071704,GO:0071840,GO:0090304,GO:0097100,GO:0097159,GO:0097367,GO:0140096,GO:0140097,GO:1901265,GO:1901360,GO:1901363,GO:1901564,GO:1901576,GO:1990837,GO:1990904
EggNOG free text desc.DNA topoisomerase type I activity
EggNOG OGsCOG3569@1,KOG0981@2759
EC5.99.1.2
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03032
Ec32 ortholog descriptionDNA topoisomerase I, catalytic core, alpha/beta subdomain
Ec32 orthologEc-12_007190.1
Exons1
Model size312
Cds size312
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816695.924716-CDS-L-elsbetiae_contig631:220..5321622816695.924716-CDS-L-elsbetiae_contig631:220..532Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig631 221..532 +
1691683746.727655-CDS-L-elsbetiae_contig631:220..5321691683746.727655-CDS-L-elsbetiae_contig631:220..532Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig631 221..532 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig631.14951.1prot_L-elsbetiae_contig631.14951.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig631 221..532 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig631.14951.1

>prot_L-elsbetiae_contig631.14951.1 ID=prot_L-elsbetiae_contig631.14951.1|Name=mRNA_L-elsbetiae_contig631.14951.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=104bp
QVFAKTLRDKFVWAMNVPPDWSFSYETLLNSKQSALDVPPLPGSGKKKAA
ASAAKATPKAAAAAAAAAAAKPAAATASPKVGTEARANPPSGAKGKGKAK
EEDE
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mRNA from alignment at L-elsbetiae_contig631:221..532+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig631.14951.1 ID=mRNA_L-elsbetiae_contig631.14951.1|Name=mRNA_L-elsbetiae_contig631.14951.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=312bp|location=Sequence derived from alignment at L-elsbetiae_contig631:221..532+ (Laminarionema elsbetiae ELsaHSoW15)
CAGGTGTTCGCCAAGACCCTGAGGGACAAGTTCGTGTGGGCGATGAACGT
GCCCCCGGACTGGAGCTTCTCCTACGAAACGCTCTTGAACTCCAAGCAGA
GCGCGTTGGACGTCCCCCCCCTCCCGGGCAGCGGCAAGAAGAAGGCCGCT
GCCTCGGCTGCGAAGGCGACCCCGAAGGCCGCCGCCGCCGCCGCCGCTGC
TGCTGCTGCGAAGCCCGCTGCGGCTACGGCTTCCCCGAAGGTGGGGACCG
AAGCGCGGGCAAATCCGCCCTCTGGGGCGAAGGGCAAGGGCAAAGCCAAG
GAGGAAGACGAA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig631:221..532+

>mRNA_L-elsbetiae_contig631.14951.1 ID=mRNA_L-elsbetiae_contig631.14951.1|Name=mRNA_L-elsbetiae_contig631.14951.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=624bp|location=Sequence derived from alignment at L-elsbetiae_contig631:221..532+ (Laminarionema elsbetiae ELsaHSoW15)
CAGGTGTTCGCCAAGACCCTGAGGGACAAGTTCGTGTGGGCGATGAACGT
GCCCCCGGACTGGAGCTTCTCCTACGAAACGCTCTTGAACTCCAAGCAGA
GCGCGTTGGACGTCCCCCCCCTCCCGGGCAGCGGCAAGAAGAAGGCCGCT
GCCTCGGCTGCGAAGGCGACCCCGAAGGCCGCCGCCGCCGCCGCCGCTGC
TGCTGCTGCGAAGCCCGCTGCGGCTACGGCTTCCCCGAAGGTGGGGACCG
AAGCGCGGGCAAATCCGCCCTCTGGGGCGAAGGGCAAGGGCAAAGCCAAG
GAGGAAGACGAACAGGTGTTCGCCAAGACCCTGAGGGACAAGTTCGTGTG
GGCGATGAACGTGCCCCCGGACTGGAGCTTCTCCTACGAAACGCTCTTGA
ACTCCAAGCAGAGCGCGTTGGACGTCCCCCCCCTCCCGGGCAGCGGCAAG
AAGAAGGCCGCTGCCTCGGCTGCGAAGGCGACCCCGAAGGCCGCCGCCGC
CGCCGCCGCTGCTGCTGCTGCGAAGCCCGCTGCGGCTACGGCTTCCCCGA
AGGTGGGGACCGAAGCGCGGGCAAATCCGCCCTCTGGGGCGAAGGGCAAG
GGCAAAGCCAAGGAGGAAGACGAA
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