mRNA_L-elsbetiae_contig6305.14943.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6305.14943.1
Unique NamemRNA_L-elsbetiae_contig6305.14943.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig6305.14943.1 vs. uniprot
Match: A0A6H5L179_9PHAE (Aurora kinase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L179_9PHAE)

HSP 1 Score: 76.6 bits (187), Expect = 4.030e-13
Identity = 35/50 (70.00%), Postives = 43/50 (86.00%), Query Frame = -1 
Query:    3 LVPFSTARVKPVSHRSVGKAAGVQVFAGGRASITVGRRWLVASENGEQVW 152
            L P STARVKPV+HRS GKAA V+V+  GRASI+VG+RWL+AS +GE+VW
Sbjct:  867 LAPLSTARVKPVAHRSGGKAAAVEVYPDGRASISVGKRWLIASADGERVW 916
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6305.14943.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5L179_9PHAE4.030e-1370.00Aurora kinase n=1 Tax=Ectocarpus sp. CCAP 1310/34 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6305contigL-elsbetiae_contig6305:5011..5525 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size515
Cds size306
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6305.14943.1prot_L-elsbetiae_contig6305.14943.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6305 5065..5370 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816695.3725553-UTR-L-elsbetiae_contig6305:5010..50641622816695.3725553-UTR-L-elsbetiae_contig6305:5010..5064Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6305 5011..5064 +
1691683746.4109008-UTR-L-elsbetiae_contig6305:5010..50641691683746.4109008-UTR-L-elsbetiae_contig6305:5010..5064Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6305 5011..5064 +
1622816695.3992813-UTR-L-elsbetiae_contig6305:5370..55251622816695.3992813-UTR-L-elsbetiae_contig6305:5370..5525Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6305 5371..5525 +
1691683746.4278915-UTR-L-elsbetiae_contig6305:5370..55251691683746.4278915-UTR-L-elsbetiae_contig6305:5370..5525Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6305 5371..5525 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816695.3863742-CDS-L-elsbetiae_contig6305:5064..53701622816695.3863742-CDS-L-elsbetiae_contig6305:5064..5370Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6305 5065..5370 +
1691683746.4197066-CDS-L-elsbetiae_contig6305:5064..53701691683746.4197066-CDS-L-elsbetiae_contig6305:5064..5370Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6305 5065..5370 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6305.14943.1

>prot_L-elsbetiae_contig6305.14943.1 ID=prot_L-elsbetiae_contig6305.14943.1|Name=mRNA_L-elsbetiae_contig6305.14943.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=102bp
MLARPPAKTWTPAAFPTERWDTGLTRAVEKGTSGILSPAVLFAGEAETEE
STLPAHPFSWRRLSAEAAARTSRRSFGRGEPCACPCPLPGGESRTGGCGG
G*
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mRNA from alignment at L-elsbetiae_contig6305:5011..5525+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6305.14943.1 ID=mRNA_L-elsbetiae_contig6305.14943.1|Name=mRNA_L-elsbetiae_contig6305.14943.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=515bp|location=Sequence derived from alignment at L-elsbetiae_contig6305:5011..5525+ (Laminarionema elsbetiae ELsaHSoW15)
GCCCAAACCTGCTCGCCGTTCTCCGAGGCAACTAACCACCGCCTTCCCAC
CGTGATGCTAGCCCGCCCGCCGGCGAAAACCTGGACCCCTGCCGCCTTCC
CTACGGAGCGGTGGGACACCGGTTTGACGCGGGCGGTGGAGAAGGGGACC
AGCGGGATCCTGTCGCCAGCCGTCTTGTTTGCGGGAGAGGCGGAAACCGA
GGAGTCGACTCTCCCGGCGCATCCGTTCTCGTGGAGGCGCCTCTCGGCCG
AGGCTGCTGCGCGCACCTCACGAAGGTCGTTCGGTCGCGGAGAACCCTGC
GCGTGCCCCTGCCCGCTTCCTGGTGGTGAGAGTAGGACCGGCGGTTGCGG
CGGGGGCTGAGGAGGGAGAGGCGGCGGGGGTCGAGACGCCCTCCTTCCGC
CCTCTCGCGGCCGCCTGCGGCGTATCGGTGGTGGTCCTGAGAAAGGCGCG
AACGGCAGGCCGTCCGCGCTCGAGCGCGCACGGCAGCCGCCACCACCACT
GCTGCTACTGCTGCT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig6305:5011..5525+

>mRNA_L-elsbetiae_contig6305.14943.1 ID=mRNA_L-elsbetiae_contig6305.14943.1|Name=mRNA_L-elsbetiae_contig6305.14943.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=612bp|location=Sequence derived from alignment at L-elsbetiae_contig6305:5011..5525+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCTAGCCCGCCCGCCGGCGAAAACCTGGACCCCTGCCGCCTTCCCTAC
GGAGCGGTGGGACACCGGTTTGACGCGGGCGGTGGAGAAGGGGACCAGCG
GGATCCTGTCGCCAGCCGTCTTGTTTGCGGGAGAGGCGGAAACCGAGGAG
TCGACTCTCCCGGCGCATCCGTTCTCGTGGAGGCGCCTCTCGGCCGAGGC
TGCTGCGCGCACCTCACGAAGGTCGTTCGGTCGCGGAGAACCCTGCGCGT
GCCCCTGCCCGCTTCCTGGTGGTGAGAGTAGGACCGGCGGTTGCGGCGGG
GGCTGAATGCTAGCCCGCCCGCCGGCGAAAACCTGGACCCCTGCCGCCTT
CCCTACGGAGCGGTGGGACACCGGTTTGACGCGGGCGGTGGAGAAGGGGA
CCAGCGGGATCCTGTCGCCAGCCGTCTTGTTTGCGGGAGAGGCGGAAACC
GAGGAGTCGACTCTCCCGGCGCATCCGTTCTCGTGGAGGCGCCTCTCGGC
CGAGGCTGCTGCGCGCACCTCACGAAGGTCGTTCGGTCGCGGAGAACCCT
GCGCGTGCCCCTGCCCGCTTCCTGGTGGTGAGAGTAGGACCGGCGGTTGC
GGCGGGGGCTGA
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