mRNA_L-elsbetiae_contig6304.14942.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig6304.14942.1 vs. uniprot
Match: D7FHU3_ECTSI (HTH La-type RNA-binding domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHU3_ECTSI) HSP 1 Score: 202 bits (515), Expect = 6.140e-63 Identity = 103/141 (73.05%), Postives = 118/141 (83.69%), Query Frame = 1 Query: 139 EAEALKMLEFYFGDSNFGWDRFMKSKAGKMGENLIDVSILMTFNKLKNIVKDAGLSTEGGLELIARLGEESPNLRVSEDKKQIGRAEPLTEESEIERVARTVQTKGYKKDAKITIPDVEKLFAETGKCRYVKICRASRGKL 561 E ALKMLEFYFGDSNFGWDRFM++KAGKMGENL+D+S+LMTFNKLKNIVK A LS E G LIAR+GE SP+LRVSEDKKQIGRA +TEE+ ER+ARTVQTKGY K++ I I DVEKLF++ GK YVKIC+A KL Sbjct: 53 ETAALKMLEFYFGDSNFGWDRFMQNKAGKMGENLMDISVLMTFNKLKNIVKKADLSPEEGQALIARMGEASPSLRVSEDKKQIGRAAAMTEEAGKERIARTVQTKGYPKESSIKIEDVEKLFSDAGKANYVKICKAGGNKL 193
BLAST of mRNA_L-elsbetiae_contig6304.14942.1 vs. uniprot
Match: A0A6H5JNF3_9PHAE (HTH La-type RNA-binding domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNF3_9PHAE) HSP 1 Score: 103 bits (256), Expect = 5.850e-23 Identity = 51/68 (75.00%), Postives = 58/68 (85.29%), Query Frame = 1 Query: 136 KEAE--ALKMLEFYFGDSNFGWDRFMKSKAGKMGENLIDVSILMTFNKLKNIVKDAGLSTEGGLELIA 333 KEAE ALKMLEFYFGDSNFGWDRFM++KAGKMGE L+D+S+LMTFNKLKNIVK A LS E L++ Sbjct: 223 KEAETAALKMLEFYFGDSNFGWDRFMQNKAGKMGEKLMDISVLMTFNKLKNIVKKADLSPEEAQALVS 290
BLAST of mRNA_L-elsbetiae_contig6304.14942.1 vs. uniprot
Match: D3BHF0_POLPP (Lupus La protein n=1 Tax=Polysphondylium pallidum (strain ATCC 26659 / Pp 5 / PN500) TaxID=670386 RepID=D3BHF0_POLPP) HSP 1 Score: 75.9 bits (185), Expect = 6.880e-13 Identity = 44/138 (31.88%), Postives = 79/138 (57.25%), Query Frame = 1 Query: 145 EALKMLEFYFGDSNFGWDRFMKSKAGKMGENLIDVSILMTFNKLKNIVKDAGLSTEGGLELIARLGEESPNLRVSEDKKQIGRAEPLTEESEIERVARTVQTKGYKKDAKITIPDVEKLFAETGKCRYVKICRASRGK 558 + K +E+YF DSN+ D+F+K A K E + + +L TFNK+K++ D L+LI+ ++S +L++SED K + R PL + E+ + +T+ +KG+ KD T+ ++ F GK V++ + ++ K Sbjct: 18 KVAKQIEYYFSDSNYPTDKFLKEAAAKNPEGYVGIEVLATFNKIKSMTTD--------LQLISDALKDSDSLQLSEDGKMVKRLNPLPDNEELAK--KTLYSKGWPKDT-TTMETIQDFFGSYGKVLSVRMRKNNKDK 144
BLAST of mRNA_L-elsbetiae_contig6304.14942.1 vs. uniprot
Match: Q54TG6_DICDI (Uncharacterized protein n=1 Tax=Dictyostelium discoideum TaxID=44689 RepID=Q54TG6_DICDI) HSP 1 Score: 75.5 bits (184), Expect = 8.940e-13 Identity = 45/132 (34.09%), Postives = 75/132 (56.82%), Query Frame = 1 Query: 142 AEALKMLEFYFGDSNFGWDRFMKSKAGKMGENLIDVSILMTFNKLKNIVKDAGLSTEGGLELIARLGEESPNLRVSEDKKQIGRAEPLTEESEIERVARTVQTKGYKKDAKITIPDVEKLFAETGKCRYVKI 537 + LK +E+YF DSNF D+F++S+A K +N I + ++ +FN++K I D L+LI ++S L+VSED K + R +PL E + +T+ +KG+ +D TI V++ F G + V + Sbjct: 7 TQILKQVEYYFSDSNFPRDKFLRSEAAKNVDNYISIDVIASFNRMKTISTD--------LQLITEALKKSTRLQVSEDGKMVRRLDPLPENIDC---GKTLYSKGWPEDT--TIEKVQEFFNANGGYKVVSV 125
BLAST of mRNA_L-elsbetiae_contig6304.14942.1 vs. uniprot
Match: A0A482RX93_9ARCH (Uncharacterized protein (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RX93_9ARCH) HSP 1 Score: 74.7 bits (182), Expect = 1.550e-12 Identity = 47/129 (36.43%), Postives = 73/129 (56.59%), Query Frame = 1 Query: 154 KMLEFYFGDSNFGWDRFMKSKAGKMGENLIDVSILMTFNKLKNIVKDAGLSTEGGLELIARLGEESPNLRVSEDKKQIGRAEPLTEESEIERVARTVQTKGYKKD-AKITIPDVEKLFAETGKCRYVKI 537 K +EFYF DSN+ D F+K+ A + + +S+L+TFN+LKN+ D +A+ E S + +S +K ++ RAEPL E E +RT+ KGY D A +TI + + ++ GK YVK+ Sbjct: 10 KQVEFYFSDSNYRKDTFLKAAAESDPDGFVAISVLLTFNRLKNLTTDVAE--------VAKAVESSDAVVLSANKDKVKRAEPLPETDES--ASRTLYIKGYPVDNADVTIESIAEQWSPYGKVLYVKM 128
BLAST of mRNA_L-elsbetiae_contig6304.14942.1 vs. uniprot
Match: A0A7S0SSA1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0SSA1_9STRA) HSP 1 Score: 68.2 bits (165), Expect = 5.080e-11 Identity = 43/136 (31.62%), Postives = 73/136 (53.68%), Query Frame = 1 Query: 139 EAEALKMLEFYFGDSNFGWDRFMKSKAGKMGENLIDVSILMTFNKLKNIVKDAGLSTEGGLELIARLGEESPNLRVSEDKKQIGRAEPLTEESEIERVARTVQTKGYKKDAKI-TIPDVEKLFAETGKCRYVKICR 543 E+ K +EFYF DSNF D F+K+ A E + +S+++TFNKL+N+ D +A E S + + +DK ++ R+ PL E+ + +T+ KG+ + I TI ++ +LF+ G V++ R Sbjct: 4 ESAIKKQVEFYFSDSNFRKDTFLKAAADSDPEGFVPISVVLTFNKLRNLTTDEAA--------VANAIENSNVVTLDDDKTRVRRSNPLPEDDTSK--PKTLYVKGFPVEEPIVTIDEITELFSVYGDIAIVRLRR 129
BLAST of mRNA_L-elsbetiae_contig6304.14942.1 vs. uniprot
Match: A0A835Z2D4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z2D4_9STRA) HSP 1 Score: 70.5 bits (171), Expect = 6.750e-11 Identity = 46/135 (34.07%), Postives = 74/135 (54.81%), Query Frame = 1 Query: 142 AEALKMLEFYFGDSNFGWDRFMKSKAGKMGENLIDVSILMTFNKLKNIVKDAGLSTEGGLELIARLGEESPNLRVSEDKKQIGRAEPLTEESEIERVARTVQTKGYKKDAK-ITIPDVEKLFAETGKCRYVKICR 543 A+ + LEFYFGDSNF D+F++ + ++L+ +++LMTFNKLK++ D + + ++S L VSED ++GR + TE + RT+ KG+ D ++I V +F G+ YV I R Sbjct: 93 AKVQRQLEFYFGDSNFNRDKFLREQVKLSEDSLVPLTVLMTFNKLKSMTADEAV--------VLAAAKQSEVLSVSEDGLRVGRGDGATE-LRYDARPRTIYAKGFGYDCPDLSIEFVTDMFKVFGEVGYVYIRR 218
BLAST of mRNA_L-elsbetiae_contig6304.14942.1 vs. uniprot
Match: A0A8J4V333_9MYCE (Uncharacterized protein n=1 Tax=Polysphondylium violaceum TaxID=133409 RepID=A0A8J4V333_9MYCE) HSP 1 Score: 69.7 bits (169), Expect = 9.960e-11 Identity = 44/131 (33.59%), Postives = 75/131 (57.25%), Query Frame = 1 Query: 145 EALKMLEFYFGDSNFGWDRFMKSKAGKMGENLIDVSILMTFNKLKNIVKDAGLSTEGGLELIARLGEESPNLRVSEDKKQIGRAEPLTEESEIERVARTVQTKGYKKDAKITIPDVEKLFAETGKCRYVKI 537 + LK +E+YF DSNF D+F+++++ K + I + + +FN++K + D L+LI + ++S L V +D K I R +PL E E E+ T+ +KG+ D TI VE+ F++ GK V++ Sbjct: 18 KILKQVEYYFSDSNFIRDKFLRAESAKNPDGFISIDTIASFNRMKELSTD--------LQLITDILKKSSRLVVDQDGKMIKRKDPLPENIESEK---TLYSKGWPLDT--TIEKVEQFFSQFGKVLSVRL 135
BLAST of mRNA_L-elsbetiae_contig6304.14942.1 vs. uniprot
Match: A0A0S4JIJ0_BODSA (LA RNA-binding protein, putative n=1 Tax=Bodo saltans TaxID=75058 RepID=A0A0S4JIJ0_BODSA) HSP 1 Score: 67.8 bits (164), Expect = 4.570e-10 Identity = 45/131 (34.35%), Postives = 71/131 (54.20%), Query Frame = 1 Query: 139 EAEALKMLEFYFGDSNFGWDRFMKSKAGKMGENLIDVSILMTFNKLKNIVKDAGLSTEGGLELIARLGEESPNLRVSEDKKQIGRAEPLTEESEIERVARTVQTKGYKKDAKITIPDVEKLFAETGKCRYV 531 +A+ K +EFYF D N D F+K+K + E I +++L+TFN++ + KDA +++A + SP L V E+ Q+ RA+PL E I+ A TV K A T+ D+++ F + G R V Sbjct: 8 QAKLQKQVEFYFSDVNIAKDVFLKAKMAESAEGFIPLAVLLTFNRVNAVTKDA--------KVLAESIKASPLLVVDEENLQVRRAQPLPES--IQTDAETVYVKPV--PANSTLEDLQEFFGKFGTVRAV 126
BLAST of mRNA_L-elsbetiae_contig6304.14942.1 vs. uniprot
Match: F4QD37_CAVFA (Lupus La protein n=1 Tax=Cavenderia fasciculata (strain SH3) TaxID=1054147 RepID=F4QD37_CAVFA) HSP 1 Score: 67.0 bits (162), Expect = 9.810e-10 Identity = 41/133 (30.83%), Postives = 73/133 (54.89%), Query Frame = 1 Query: 145 EALKMLEFYFGDSNFGWDRFMKSKAGKMGENLIDVSILMTFNKLKNIVKDAGLSTEGGLELIARLGEESPNLRVSEDKKQIGRAEPLTEESEIERVARTVQTKGYKKDAKITIPDVEKLFAETGKCRYVKICR 543 + +K +E+YF DSNF D+F+K +A K E +++ + F ++K + D L+L+ + S L+VS D+KQ+ R +PL ++ E + + +KG+ A+ TI V++ FA G V++ R Sbjct: 57 KIMKQVEYYFSDSNFPRDKFLKGEAAKNPEGYVNIITIADFKRMKEMTSD--------LQLVTDSLKNSSRLQVSPDEKQVRRTDPLPDDEE--HAKKVLYSKGW--PAETTIETVKEFFAPYGASTSVRLRR 177 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6304.14942.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig6304.14942.1 >prot_L-elsbetiae_contig6304.14942.1 ID=prot_L-elsbetiae_contig6304.14942.1|Name=mRNA_L-elsbetiae_contig6304.14942.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=187bp MDEETKAAGAETEAAPAPVSEEKKAAGAAEAEAAPAPVSEETKKEKEAEAback to top mRNA from alignment at L-elsbetiae_contig6304:3608..6406+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig6304.14942.1 ID=mRNA_L-elsbetiae_contig6304.14942.1|Name=mRNA_L-elsbetiae_contig6304.14942.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2799bp|location=Sequence derived from alignment at L-elsbetiae_contig6304:3608..6406+ (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig6304:3608..6406+ >mRNA_L-elsbetiae_contig6304.14942.1 ID=mRNA_L-elsbetiae_contig6304.14942.1|Name=mRNA_L-elsbetiae_contig6304.14942.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1122bp|location=Sequence derived from alignment at L-elsbetiae_contig6304:3608..6406+ (Laminarionema elsbetiae ELsaHSoW15)back to top |