mRNA_L-elsbetiae_contig6302.14940.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6302.14940.1
Unique NamemRNA_L-elsbetiae_contig6302.14940.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6302.14940.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6302contigL-elsbetiae_contig6302:486..790 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size306
Cds size141
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816695.135395-CDS-L-elsbetiae_contig6302:485..6261622816695.135395-CDS-L-elsbetiae_contig6302:485..626Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6302 486..626 +
1691683746.246351-CDS-L-elsbetiae_contig6302:485..6261691683746.246351-CDS-L-elsbetiae_contig6302:485..626Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6302 486..626 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816695.1462824-UTR-L-elsbetiae_contig6302:626..7901622816695.1462824-UTR-L-elsbetiae_contig6302:626..790Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6302 627..790 +
1691683746.262016-UTR-L-elsbetiae_contig6302:626..7901691683746.262016-UTR-L-elsbetiae_contig6302:626..790Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6302 627..790 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6302.14940.1prot_L-elsbetiae_contig6302.14940.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6302 486..626 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6302.14940.1

>prot_L-elsbetiae_contig6302.14940.1 ID=prot_L-elsbetiae_contig6302.14940.1|Name=mRNA_L-elsbetiae_contig6302.14940.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=47bp
GEAGDGGVVNLVVKTDACLRSQVAAFAGAVKAEAWARGEPVVMSIL*
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mRNA from alignment at L-elsbetiae_contig6302:486..790+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6302.14940.1 ID=mRNA_L-elsbetiae_contig6302.14940.1|Name=mRNA_L-elsbetiae_contig6302.14940.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=305bp|location=Sequence derived from alignment at L-elsbetiae_contig6302:486..790+ (Laminarionema elsbetiae ELsaHSoW15)
GGAGAGGCCGGTGACGGCGGCGTCGTGAACTTGGTGGTGAAGACGGACGC
TTGCCTGCGGTCGCAGGTGGCCGCGTTCGCGGGCGCGGTGAAGGCGGAGG
CGTGGGCGAGGGGCGAGCCCGTCGTGATGTCGATCTTGTGACGAGGCGCC
CGTGTCGGCGGCGAAGTGAGGGTGGGTTTCTAGCTGGGTTGTGTGGTTGG
GTTTGATGGTGGCGGTGCTGCTGCTGCTGCTGCTGCTGCTGCTTGTTGGT
GGCAGGGGGTGACCTTAGCGCGTGACGTTCTTTTTGCCGTTTTTTTTTTT
GTGTG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig6302:486..790+

>mRNA_L-elsbetiae_contig6302.14940.1 ID=mRNA_L-elsbetiae_contig6302.14940.1|Name=mRNA_L-elsbetiae_contig6302.14940.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=282bp|location=Sequence derived from alignment at L-elsbetiae_contig6302:486..790+ (Laminarionema elsbetiae ELsaHSoW15)
GGAGAGGCCGGTGACGGCGGCGTCGTGAACTTGGTGGTGAAGACGGACGC
TTGCCTGCGGTCGCAGGTGGCCGCGTTCGCGGGCGCGGTGAAGGCGGAGG
CGTGGGCGAGGGGCGAGCCCGTCGTGATGTCGATCTTGTGAGGAGAGGCC
GGTGACGGCGGCGTCGTGAACTTGGTGGTGAAGACGGACGCTTGCCTGCG
GTCGCAGGTGGCCGCGTTCGCGGGCGCGGTGAAGGCGGAGGCGTGGGCGA
GGGGCGAGCCCGTCGTGATGTCGATCTTGTGA
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