mRNA_L-elsbetiae_contig63.14930.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig63.14930.1
Unique NamemRNA_L-elsbetiae_contig63.14930.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig63.14930.1 vs. uniprot
Match: D7FXY8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FXY8_ECTSI)

HSP 1 Score: 86.3 bits (212), Expect = 9.320e-18
Identity = 40/49 (81.63%), Postives = 41/49 (83.67%), Query Frame = 2 
Query:  107 PNTYTTVMFGMDPAVDDTVGGSEARKRKRTGGALVCNVKRIAFEGNSHE 253
            PNTYTTVMF  DPA D+TV GSEARKRKR G ALVCNVKR  FEGNSHE
Sbjct:  222 PNTYTTVMFDKDPAADETVKGSEARKRKRAGEALVCNVKRTTFEGNSHE 270
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig63.14930.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FXY8_ECTSI9.320e-1881.63Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig63contigL-elsbetiae_contig63:34432..36665 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size277
Cds size276
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig63.14930.1prot_L-elsbetiae_contig63.14930.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig63 34432..36665 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816693.5425265-CDS-L-elsbetiae_contig63:34431..344581622816693.5425265-CDS-L-elsbetiae_contig63:34431..34458Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig63 34432..34458 +
1691683745.1733243-CDS-L-elsbetiae_contig63:34431..344581691683745.1733243-CDS-L-elsbetiae_contig63:34431..34458Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig63 34432..34458 +
1622816693.5549634-CDS-L-elsbetiae_contig63:35394..355421622816693.5549634-CDS-L-elsbetiae_contig63:35394..35542Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig63 35395..35542 +
1691683745.18434-CDS-L-elsbetiae_contig63:35394..355421691683745.18434-CDS-L-elsbetiae_contig63:35394..35542Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig63 35395..35542 +
1622816693.5662093-CDS-L-elsbetiae_contig63:36007..360851622816693.5662093-CDS-L-elsbetiae_contig63:36007..36085Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig63 36008..36085 +
1691683745.1945097-CDS-L-elsbetiae_contig63:36007..360851691683745.1945097-CDS-L-elsbetiae_contig63:36007..36085Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig63 36008..36085 +
1622816693.576663-CDS-L-elsbetiae_contig63:36642..366651622816693.576663-CDS-L-elsbetiae_contig63:36642..36665Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig63 36643..36665 +
1691683745.2040734-CDS-L-elsbetiae_contig63:36642..366651691683745.2040734-CDS-L-elsbetiae_contig63:36642..36665Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig63 36643..36665 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig63.14930.1

>prot_L-elsbetiae_contig63.14930.1 ID=prot_L-elsbetiae_contig63.14930.1|Name=mRNA_L-elsbetiae_contig63.14930.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=92bp
ASFCKLSAKLVHQDVNKRHFTAEWAMPVMPDSSLWPQHVHHGHVRHGPGR
GRHCRGLGGAQEEANRRGVGVQRQEDSVRGKFARGGACKPSE
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mRNA from alignment at L-elsbetiae_contig63:34432..36665+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig63.14930.1 ID=mRNA_L-elsbetiae_contig63.14930.1|Name=mRNA_L-elsbetiae_contig63.14930.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2234bp|location=Sequence derived from alignment at L-elsbetiae_contig63:34432..36665+ (Laminarionema elsbetiae ELsaHSoW15)
GCCAGTTTCTGCAAGCTTTCCGCAAAGGTGCGCAGAACCAATTATTTCTG
AGATTCGGTGTGTTATCTCTCAAATATGTAAGAGAGTGTTGTAATTCGGC
CTGGCTGGGCTTGGCGGTGGGTTTTAAATTTCCCAAGGGTAGGGTGAACA
TCGGCAGGGTGTGTGTGTGCGATTCGAATGCGTCGATGGTGTACTGGTAG
TGGTTGGAAGCGGTGCTCTGCTGGGCTCACTGCTGTTGGTCACAGAGGTG
GGGCACTGCTGTTCTCGCTGATGATGCTGGGTGATGCCAACAACGGCTGT
GGTGGTAGTTCCATTGTTGTTGGAGCTGGTTGCTTGGTGTGCTGTTGCTG
CTGACTCCGTGCTGCTTTTTTCGTGGCTTTTGATGTGCTGTTTTGCTTCC
CCCTGTAGGTCTGCAGACAGCATTTTCTGGCTGCTTTCCCCGCGCAGCGA
ATGCCAGCCACCGTGGTCTATGGCCGCCTTACCTTTACCACCACCGCCGC
CGCCTTCCTTGCTTGTGACGCGTGCGATGCTTCTCTTTTCTATTTCGACG
TTTATAGTGCAGGTGTTCGGTCTTCTTCATCGTTTGTGTCTCGTCTTTTA
TTATTTGTTGCTGTTGCTGTTGTTGTTGTTGTTGTTTTTGCTGCTGCTGC
TGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTG
CTGCTGCTGCTGTTGCTGTTGAGTTTTGAAGGTCGGTTCGAACGTGCTTA
GGAGGTGATCCTGGCAGCTGGACTACCTGTTGCTCAGCGCCGACTGGATG
CCTCCCCTTCTACCATATCTTCGCCTACTGTCACTGTTCCTATCACGTCT
TTGTTTGCCGTTTATTTTATTTTTTGTGACGCTTGAACACTAGCTGTATC
CACGATCTTGTGTCCGCTCCTGCCTACGTCGTCGGTTTTTGTTAATTGTA
TCGGCGAGAGCAGCTGGTCCACCAGGACGTGAACAAGAGGCACTTCACGG
CGGAGTGGGCGATGCCTGTCATGCCGGACAGCTCCCTGTGGCCCCAACAC
GTACACCACGGTCATGTTCGGCATGGACCCGGCCGTGGACGACACTGTCG
GGGGCTCGGAGGTGATCTCACGGAGCCCCTGGAAGAAAGAAATATGGTTG
ACAGTGACCCCCTCGTTTTACAGAGTACAAACATGGTACTAGATTGGCCG
TATTTACCGAACATGGTGCTTATTTCACCCTCGTTCTGTTTGCTAGCGAC
ACTGTTGTAGGTTTGACATAGCAAATATCAGGCAGATTTCAACCCTCCGT
GTGCGGTAGAACACCTTATACACATACGTACGTCGTCGAGAAAAAACATG
ATCGTACAATGTAGGACGTGAGAGACCGCAGCAGCGATCGCCGCAACAAA
ATAAATGCCAAGCATTGCGCTGCCTGGGGAAAAGGGGTTCACGTTGGCGC
CGTATCCATCTCCCCGAATACAGTTATTTCGAAGCGGACGTACCTTTGCC
TCTGTTGAACCGGATTTGATGCGATTTTGACGTATTTTGGGTGTGTTTAT
TGTGCGTGTTTGATCTTTTTTTCCAGGCGCGCAAGAGGAAGCGAACCGGC
GGGGCGTTGGTGTGCAACGTCAAGAGGATAGCGTTCGAGGGAAATTCGCA
CGAGGTGCACGCGTGTGTGTGTTTTATGCTTTGTTTTTCGTTTTGCCGCA
GCCCTAAGTTGTCCAGGCTGTTATATTGTCTCGGGGGGCAGGAGAGAGAG
AGAGGTGTACACTGTATGGCGCCGCTGTTCCGCTTCCCGTGTTCGTGGTC
GCGTTTGGTTGGCTCTTCCTAGCGGTTCCGAGACGGGACATGCTATTTTT
CTTCGGCATCGCGGCACACGTTAGATGGCGTCGACCTCGAACGGGCGTGA
TATATACAAGTAGCACGGTACCTTCACGCGCAAGAGAGCACGTCATCTGG
CATGTTAGTGTAAAACAGTCTATTTTTCCATGTGGGCAAAAACCTCCCGG
TGTTGCTGCTACCGGTTATGACGCGCTTCTGTCTTTTCCAGCCTTCTCGT
GTCTGCGGGATATTTTTGTGCGTGTATGTGTGTGGTGGAGCTGCCGGCTT
TGTCACAGGTGAACACTGGGTCTTACCCCTACCACCACCGCCTTTCTTGC
TTGTGACACACCCTGCTCGTCCTGCTGCTGCTGCTGCTGCTATCGGGAAA
CCCCGGGTCAGGCGGAGCTTGCAAACCTTCCGAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig63:34432..36665+

>mRNA_L-elsbetiae_contig63.14930.1 ID=mRNA_L-elsbetiae_contig63.14930.1|Name=mRNA_L-elsbetiae_contig63.14930.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=552bp|location=Sequence derived from alignment at L-elsbetiae_contig63:34432..36665+ (Laminarionema elsbetiae ELsaHSoW15)
GCCAGTTTCTGCAAGCTTTCCGCAAAGGCCAGTTTCTGCAAGCTTTCCGC
AAAGCTGGTCCACCAGGACGTGAACAAGAGGCACTTCACGGCGGAGTGGG
CGATGCCTGTCATGCCGGACAGCTCCCTGTGGCCCCAACACGTACACCAC
GGTCATGTTCGGCATGGACCCGGCCGTGGACGACACTGTCGGGGGCTCGG
AGCTGGTCCACCAGGACGTGAACAAGAGGCACTTCACGGCGGAGTGGGCG
ATGCCTGTCATGCCGGACAGCTCCCTGTGGCCCCAACACGTACACCACGG
TCATGTTCGGCATGGACCCGGCCGTGGACGACACTGTCGGGGGCTCGGAG
GCGCGCAAGAGGAAGCGAACCGGCGGGGCGTTGGTGTGCAACGTCAAGAG
GATAGCGTTCGAGGGAAATTCGCACGAGGCGCGCAAGAGGAAGCGAACCG
GCGGGGCGTTGGTGTGCAACGTCAAGAGGATAGCGTTCGAGGGAAATTCG
CACGAGGCGGAGCTTGCAAACCTTCCGAGGCGGAGCTTGCAAACCTTCCG
AG
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