mRNA_L-elsbetiae_contig63.14929.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig63.14929.1
Unique NamemRNA_L-elsbetiae_contig63.14929.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig63.14929.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig63contigL-elsbetiae_contig63:28580..29102 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size525
Cds size438
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816693.607448-CDS-L-elsbetiae_contig63:28579..290171622816693.607448-CDS-L-elsbetiae_contig63:28579..29017Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig63 28580..29017 +
1691683745.2148392-CDS-L-elsbetiae_contig63:28579..290171691683745.2148392-CDS-L-elsbetiae_contig63:28579..29017Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig63 28580..29017 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816693.6191156-UTR-L-elsbetiae_contig63:29017..291021622816693.6191156-UTR-L-elsbetiae_contig63:29017..29102Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig63 29018..29102 +
1691683745.224355-UTR-L-elsbetiae_contig63:29017..291021691683745.224355-UTR-L-elsbetiae_contig63:29017..29102Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig63 29018..29102 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig63.14929.1prot_L-elsbetiae_contig63.14929.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig63 28580..29017 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig63.14929.1

>prot_L-elsbetiae_contig63.14929.1 ID=prot_L-elsbetiae_contig63.14929.1|Name=mRNA_L-elsbetiae_contig63.14929.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=146bp
IPKELRKGAAVPYTTPTAAVTCLSRIHRAQELPARQECGVSRCYREQCLA
GFNYCKYDEPGYAVQNWLHLRTYQTAACCGSVGTRISLLLQCSTCLSNTV
FAAVDPSPGVHQAMSTFRLHNNFCRWNELRCVARVQSHVYKTAHG*
back to top

mRNA from alignment at L-elsbetiae_contig63:28580..29102+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig63.14929.1 ID=mRNA_L-elsbetiae_contig63.14929.1|Name=mRNA_L-elsbetiae_contig63.14929.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=523bp|location=Sequence derived from alignment at L-elsbetiae_contig63:28580..29102+ (Laminarionema elsbetiae ELsaHSoW15)
ATACCAAAGGAACTAAGAAAAGGCGCCGCTGTGCCGTACACAACACCAAC
TGCTGCTGTTACATGTTTGTCGCGCATCCACCGAGCTCAAGAACTGCCCG
CACGGCAAGAATGCGGAGTGTCCCGGTGTTATCGCGAACAGTGTTTAGCT
GGTTTCAACTACTGTAAGTATGATGAGCCAGGTTACGCCGTCCAAAACTG
GTTGCATTTGCGGACCTATCAAACAGCTGCCTGCTGTGGATCTGTGGGTA
CACGCATATCTTTACTACTGCAGTGTAGTACATGTTTGTCGAATACTGTC
TTCGCCGCAGTCGACCCGTCACCAGGAGTGCATCAGGCTATGTCGACGTT
CCGCTTGCACAATAATTTTTGCCGCTGGAATGAACTCAGGTGTGTAGCTC
GCGTTCAGTCTCACGTGTACAAAACTGCCCATGGATAGACTACATAGCTC
GATGCAATCTACCGTAGGTGACACAAGATACCACACCCCCTGGACCGAAC
TTTAGAGCTCCACTACTCCGTAA
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig63:28580..29102+

>mRNA_L-elsbetiae_contig63.14929.1 ID=mRNA_L-elsbetiae_contig63.14929.1|Name=mRNA_L-elsbetiae_contig63.14929.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=876bp|location=Sequence derived from alignment at L-elsbetiae_contig63:28580..29102+ (Laminarionema elsbetiae ELsaHSoW15)
ATACCAAAGGAACTAAGAAAAGGCGCCGCTGTGCCGTACACAACACCAAC
TGCTGCTGTTACATGTTTGTCGCGCATCCACCGAGCTCAAGAACTGCCCG
CACGGCAAGAATGCGGAGTGTCCCGGTGTTATCGCGAACAGTGTTTAGCT
GGTTTCAACTACTGTAAGTATGATGAGCCAGGTTACGCCGTCCAAAACTG
GTTGCATTTGCGGACCTATCAAACAGCTGCCTGCTGTGGATCTGTGGGTA
CACGCATATCTTTACTACTGCAGTGTAGTACATGTTTGTCGAATACTGTC
TTCGCCGCAGTCGACCCGTCACCAGGAGTGCATCAGGCTATGTCGACGTT
CCGCTTGCACAATAATTTTTGCCGCTGGAATGAACTCAGGTGTGTAGCTC
GCGTTCAGTCTCACGTGTACAAAACTGCCCATGGATAGATACCAAAGGAA
CTAAGAAAAGGCGCCGCTGTGCCGTACACAACACCAACTGCTGCTGTTAC
ATGTTTGTCGCGCATCCACCGAGCTCAAGAACTGCCCGCACGGCAAGAAT
GCGGAGTGTCCCGGTGTTATCGCGAACAGTGTTTAGCTGGTTTCAACTAC
TGTAAGTATGATGAGCCAGGTTACGCCGTCCAAAACTGGTTGCATTTGCG
GACCTATCAAACAGCTGCCTGCTGTGGATCTGTGGGTACACGCATATCTT
TACTACTGCAGTGTAGTACATGTTTGTCGAATACTGTCTTCGCCGCAGTC
GACCCGTCACCAGGAGTGCATCAGGCTATGTCGACGTTCCGCTTGCACAA
TAATTTTTGCCGCTGGAATGAACTCAGGTGTGTAGCTCGCGTTCAGTCTC
ACGTGTACAAAACTGCCCATGGATAG
back to top