mRNA_L-elsbetiae_contig6298.14924.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig6298.14924.1 vs. uniprot
Match: A0A6H5JF58_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF58_9PHAE) HSP 1 Score: 87.4 bits (215), Expect = 1.250e-15 Identity = 71/181 (39.23%), Postives = 98/181 (54.14%), Query Frame = 1 Query: 7 EVLRTASYEMQRSGRKGKGREE-RIAFVAAGAGRSRGAAKNGDHGAWGRGY-------GARPL------FCKMHGPNSSHGTSDCIILRKEFEKNCDQFADFLCTQPGAVPSIGGRGA-------MDGPYRQQS-RHHPGAMWSRGRPP--PQPSRGHAPGSGGH-QGRHPGGRGFEEHQP 474 E+LR +E++ R G+G+EE R A VAAG GR A K G+ G+ +PL FC++HGPNS+H TS+C LR EF + ++F ++ + A S+ RG + GPYRQQ ++ GA WSRG P P P RG G+GG QGR+ GGRG+ + P Sbjct: 75 EMLRLEEHELRYERRAGEGKEEMRHALVAAGVGRGGEAGKQAAAGSEQGGHRLQHPQRSVQPLQQQPSHFCQLHGPNSTHETSECHKLRNEFLAHYNEFCAYMSGRREAQASVFPRGGAQDSGRMVGGPYRQQPYQNEQGAGWSRGHSPALPGPPRGQGSGTGGQLQGRNSGGRGYGGYGP 255
BLAST of mRNA_L-elsbetiae_contig6298.14924.1 vs. uniprot
Match: A0A6H5KCW8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCW8_9PHAE) HSP 1 Score: 85.5 bits (210), Expect = 9.840e-15 Identity = 70/183 (38.25%), Postives = 98/183 (53.55%), Query Frame = 1 Query: 1 LNEVLRTASYEMQRSGRKGKGREE-RIAFVAAGAGRSRGAAKNGDHGAWGRGY-------GARPL------FCKMHGPNSSHGTSDCIILRKEFEKNCDQFADFLCTQPGAVPSIGGRGA-------MDGPYRQQS-RHHPGAMWSRGRPP--PQPSRGHAPGSGGH-QGRHPGGRGFEEHQP 474 + E+LR +E++ R G+G+EE R A VAAG GR A K G+ G+ +P FC++HGPNS+H TS+C LR EF + ++F ++ + A S+ RG + GPYRQQ ++ GA WSRG P P P RG G+GG QGR+ GGRG+ + P Sbjct: 224 MQEMLRLEEHELRYERRAGEGKEEMRHALVAAGVGRGGEAGKPAAAGSEQGGHRLQQPQRSVQPHQQQPSHFCQLHGPNSTHETSECHKLRNEFLAHYNEFCAYMSGRREAQASVFPRGGAQDSGRMLGGPYRQQPYQNEQGAGWSRGHSPALPGPPRGQGSGTGGQLQGRNSGGRGYGGYGP 406
BLAST of mRNA_L-elsbetiae_contig6298.14924.1 vs. uniprot
Match: A0A6H5K7Y0_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7Y0_9PHAE) HSP 1 Score: 85.5 bits (210), Expect = 1.410e-14 Identity = 71/183 (38.80%), Postives = 99/183 (54.10%), Query Frame = 1 Query: 1 LNEVLRTASYEMQRSGRKGKGREE-RIAFVAAGAGRSRGAAKNGDHGAWGRG------------YGARPL-FCKMHGPNSSHGTSDCIILRKEFEKNCDQFADFLCTQPGAVPSIGGRGA-------MDGPYRQQS-RHHPGAMWSRGRPP--PQPSRGHAPGSGGH-QGRHPGGRGFEEHQP 474 + E+LR +E++ R G+G+EE R A VAAG GR GA K G+ G + +P FC++HGPNS+H TS+C LR EF + ++F ++ + A S+ RG + GP RQQ ++ GA WSRG P P P RG G+GG QGR+PGGRG+ + P Sbjct: 283 IQEMLRLEKHELRYERRHGEGKEEMRHALVAAGVGRGGGAGKPAAAGSEQGGDRLQQPQGSVQPHQQQPSHFCQLHGPNSTHETSECRKLRHEFLAHYNEFCAYMSGRREAQGSVFPRGGAQDSGRMVGGPSRQQPYQNEQGAGWSRGHSPALPGPPRGPGSGAGGQLQGRNPGGRGYGGYGP 465
BLAST of mRNA_L-elsbetiae_contig6298.14924.1 vs. uniprot
Match: A0A6H5JXD4_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXD4_9PHAE) HSP 1 Score: 82.0 bits (201), Expect = 1.920e-13 Identity = 69/183 (37.70%), Postives = 96/183 (52.46%), Query Frame = 1 Query: 1 LNEVLRTASYEMQRSGRKGKGREE-RIAFVAAGAGRSRGAAKNGDHGAWGRGY-------GARPL------FCKMHGPNSSHGTSDCIILRKEFEKNCDQFADFLCTQPGAVPSIGGRGA-------MDGPYRQQS-RHHPGAMWSRGRPP--PQPSRGHAPGSGGH-QGRHPGGRGFEEHQP 474 + E+LR +E++ R G+G+EE R A VAAG G A K G+ G+ +P FC++HGPNS+H TS+C LR EF + +F ++ + A S+ RG + GPYRQQ ++ GA WSRG P P P RG G+GG QGR+ GGRG+ + P Sbjct: 357 MQEMLRLEEHELRYERRAGEGKEEMRHALVAAGVGLGGEAGKPAAAGSEQGGHRLQQPQTSVQPHQQQPSHFCQLHGPNSTHETSECHKLRNEFLAHYSEFCAYMSGRREAQASVFPRGGAQDSGRMVGGPYRQQPYQNEQGAGWSRGHSPALPGPPRGQGSGTGGQLQGRNSGGRGYGGYGP 539
BLAST of mRNA_L-elsbetiae_contig6298.14924.1 vs. uniprot
Match: A0A6H5JD49_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JD49_9PHAE) HSP 1 Score: 81.3 bits (199), Expect = 2.460e-13 Identity = 69/183 (37.70%), Postives = 97/183 (53.01%), Query Frame = 1 Query: 1 LNEVLRTASYEMQRSGRKGKGREE-RIAFVAAGAGRSRGAAKNGDHGAWGRGY-------GARPL------FCKMHGPNSSHGTSDCIILRKEFEKNCDQFADFLCTQPGAVPSIGGRGA-------MDGPYRQQS-RHHPGAMWSRGRPP--PQPSRGHAPGSGGH-QGRHPGGRGFEEHQP 474 + E+LR +E++ R +G+EE R AFVAAG GR A K G+ G+ +P FC++HGPNS+H TS+C LR EF + ++F ++ + A S+ RG + GP RQQ ++ GA WSRG P P P RG G+GG QGR+ GGRG+ + P Sbjct: 283 MQEMLRLEEHELRYERRAAEGKEEMRHAFVAAGVGRGGEAGKPAAAGSEQGGHRLQQPQRSVQPHQQQPSHFCQLHGPNSTHETSECHKLRNEFLAHYNEFCAYMSGRREAQGSVFPRGGAQDSGRMVGGPSRQQPYQNEQGAGWSRGHSPALPGPPRGPGSGAGGQLQGRNSGGRGYGRYGP 465
BLAST of mRNA_L-elsbetiae_contig6298.14924.1 vs. uniprot
Match: A0A6H5KQJ6_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQJ6_9PHAE) HSP 1 Score: 79.7 bits (195), Expect = 8.890e-13 Identity = 70/186 (37.63%), Postives = 97/186 (52.15%), Query Frame = 1 Query: 1 LNEVLRTASYEMQRSGRKGKGREE-RIAFVAAGAGRSRGAAKNGDHGAWGRGY------GARPL----------FCKMHGPNSSHGTSDCIILRKEFEKNCDQFADFLCTQPGAVPSIGGRGA-------MDGPYRQQS-RHHPGAMWSRGRPP--PQPSRGHAPGSGGH-QGRHPGGRGFEEHQP 474 + E+LR +E++ R G+ +EE R A VAAG GR GA K G+ G+ G+ PL FC++HGPNS+H TS+C LR EF + ++F ++ + A + RG + GP RQQ ++ GA WSRG P P P RG G+GG QGR+ GGRG + P Sbjct: 149 MQEMLRMEEHELRYERRDGERKEEMRHALVAAGVGRGGGAGKPAAAGSEQGGHRPQQPQGSLPLHQQNQQQPSHFCQLHGPNSTHETSECEKLRNEFIAHYNEFCAYMSGRREAQGFVFPRGGAQHSGRMVGGPSRQQPYQNEQGAGWSRGHSPALPGPPRGPGSGAGGQLQGRNSGGRGHGGYGP 334
BLAST of mRNA_L-elsbetiae_contig6298.14924.1 vs. uniprot
Match: A0A6H5JLU1_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLU1_9PHAE) HSP 1 Score: 79.7 bits (195), Expect = 1.160e-12 Identity = 67/183 (36.61%), Postives = 95/183 (51.91%), Query Frame = 1 Query: 1 LNEVLRTASYEMQRSGRKGKGREE-RIAFVAAGAGRSRGAAKNGDHGAWGRGYGARPL-------------FCKMHGPNSSHGTSDCIILRKEFEKNCDQFADFLCTQPGAVPSIGGRGA-------MDGPYRQQS-RHHPGAMWSRGRPP--PQPSRGHAPGSGGH-QGRHPGGRGFEEHQP 474 + E+LR +E++ R G+G+EE R A VAAG GR A K G+ G+ + FC++HGPNS+H TS+C LR EF + ++F ++ + A S+ RG + GP RQQ ++ GA WSRG P P P RG G+GG QG + GGRG+ + P Sbjct: 7 MQEMLRLEEHELRSERRAGEGKEEMRHALVAAGMGRGGEAGKPAAAGSEQGGHRLQQPQRSVQSHQQQPSHFCQLHGPNSTHETSECHKLRNEFLAHYNEFCAYMSGRREAQASVFPRGGAQDSGRMVGGPSRQQPYQNEQGAGWSRGHSPALPGPPRGQGSGTGGQLQGHNSGGRGYGGYGP 189
BLAST of mRNA_L-elsbetiae_contig6298.14924.1 vs. uniprot
Match: A0A6H5KPN8_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPN8_9PHAE) HSP 1 Score: 77.0 bits (188), Expect = 8.590e-12 Identity = 68/178 (38.20%), Postives = 94/178 (52.81%), Query Frame = 1 Query: 1 LNEVLRTASYEMQRSGRKGKGREE-RIAFVAAGAGRSRGAAKNGDHGAWGRGY-------GARPL------FCKMHGPNSSHGTSDCIILRKEFEKNCDQFADFLCTQPGAVPSIGGRG-AMDG------PYRQQS-RHHPGAMWSRGRPP--PQPSRGHAPGSGGH-QGRHPGGRGF 459 + E+LR +E++ R G+G+EE R A VAAG GR A K G+ G+ +P FC++HGPNS+H TS+C LR E + ++F ++ + A + RG A D PYRQQ ++ GA WSRG P P P RG G+GG QGR+ GGRG+ Sbjct: 283 MQEMLRLEEHELRYERRAGEGKEEMRHALVAAGVGRGGEAGKPAAAGSEQGGHRLQQPQRSVQPHQQQPSHFCQLHGPNSTHETSECHKLRNEILAHYNEFCAYMSGRREAQALVFPRGGAQDSGRMVGDPYRQQPYQNEQGAGWSRGHSPALPGPPRGQGSGTGGQLQGRNSGGRGY 460
BLAST of mRNA_L-elsbetiae_contig6298.14924.1 vs. uniprot
Match: A0A6H5JC40_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JC40_9PHAE) HSP 1 Score: 77.0 bits (188), Expect = 9.300e-12 Identity = 60/163 (36.81%), Postives = 84/163 (51.53%), Query Frame = 1 Query: 1 LNEVLRTASYEMQRSGRKGKGREE-RIAFVAAGAGRSRGAAKNGDHGAWGRGY-------GARPL------FCKMHGPNSSHGTSDCIILRKEFEKNCDQFADFLCTQPGAVPSIGGRGA-------MDGPYRQQS-RHHPGAMWSRGRPPPQPSRGHAPGSG 423 + E+LR +E++ R G+G+EE R A VAAG GR A K G+ G+ +P FC++HGPNS+H TS+C LR EF + ++F ++ + A S+ RG +DGPYRQQ ++ G WSRG P P H GSG Sbjct: 834 MQEMLRLEEHELRYERRAGEGKEEMRHALVAAGVGRGGEAGKPAAAGSEQGGHRLQQPQRSVQPHQQQPSHFCQLHGPNSTHETSECHKLRNEFLAHYNEFCAYMSGRREAQASVFPRGGSQDSGRMVDGPYRQQPYQNEQGTGWSRGYSPALPGPPHGQGSG 996
BLAST of mRNA_L-elsbetiae_contig6298.14924.1 vs. uniprot
Match: A0A6H5JWT3_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWT3_9PHAE) HSP 1 Score: 68.6 bits (166), Expect = 4.360e-9 Identity = 56/150 (37.33%), Postives = 75/150 (50.00%), Query Frame = 1 Query: 7 EVLRTASYEMQRSGRKGKGREE-RIAFVAAGAGRSRGAAKNGDHGAWGRGYGARPL-------------FCKMHGPNSSHGTSDCIILRKEFEKNCDQFADFLCTQPGAVPSIGGRGA-------MDGPYRQQS-RHHPGAMWSRGRPPP 390 EV R YE R G+G+EE R A VAAG GR A K G+ G+ + FC++HGPNS+H TS+C LR EF + ++F ++ + A S+ RG + GPYRQQ ++ GA WSRG PP Sbjct: 10 EVGRVLRYER----RAGEGKEEMRHALVAAGVGRGGEAGKPAAAGSEQGGHRLQQPQRSMQPHQQQPSHFCQLHGPNSTHETSECHKLRNEFLAHYNEFCAYMSGRREAQASVFPRGGAQDSGRMVGGPYRQQPYQNEQGAGWSRGHSPP 155 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6298.14924.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 11
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig6298.14924.1 >prot_L-elsbetiae_contig6298.14924.1 ID=prot_L-elsbetiae_contig6298.14924.1|Name=mRNA_L-elsbetiae_contig6298.14924.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=326bp LNEVLRTASYEMQRSGRKGKGREERIAFVAAGAGRSRGAAKNGDHGAWGRback to top mRNA from alignment at L-elsbetiae_contig6298:4..983+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig6298.14924.1 ID=mRNA_L-elsbetiae_contig6298.14924.1|Name=mRNA_L-elsbetiae_contig6298.14924.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=980bp|location=Sequence derived from alignment at L-elsbetiae_contig6298:4..983+ (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig6298:4..983+ >mRNA_L-elsbetiae_contig6298.14924.1 ID=mRNA_L-elsbetiae_contig6298.14924.1|Name=mRNA_L-elsbetiae_contig6298.14924.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1956bp|location=Sequence derived from alignment at L-elsbetiae_contig6298:4..983+ (Laminarionema elsbetiae ELsaHSoW15)back to top |