|
Homology
BLAST of mRNA_L-elsbetiae_contig6287.14912.1 vs. uniprot
Match: D7FY66_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FY66_ECTSI) HSP 1 Score: 434 bits (1117), Expect = 6.950e-143 Identity = 218/244 (89.34%), Postives = 230/244 (94.26%), Query Frame = 2
Query: 638 QVTKDSMTLVVSGKAKYTQAQGCLDHSLFQEYDCVEGAKFGINLTTLLECLQIFGPSSLAQTSVSMAYQEARAMFRLTLEEGGVFTSCEIRTIHQDEDAMEFSALAKAFGNTDEVCRCILKSEILKEAFQELADLNGATTVSVTFGQEAPHLQLSAKGSIGSSEIDFPKTSEAFVFFTCHVPRVSWTYLMSGMETGMRALPHANETYFRVNEEGILCIQHQVPMSMGQTSFVDVLLCPDMQDVD 1369
+VTK+SMTLVVSG+AKYTQAQG LD SLFQEYDCVEGAKFGINLTTLLECLQIFGP SLAQTSVSMAYQEARA FRLTLEEGGVFTSCEIRTIHQDE+AMEFS LAKAFG + EVCRCILKSEILKEAFQELADLNGAT+VSVTFGQEAPHLQLSAKGS GSSEIDFPK+SEAFV F C RVSWTYLM+GMETGMRAL HANETYFRVNEEGILCIQHQ+PMSMGQTSFVDVLLCPD+Q++D
Sbjct: 144 EVTKESMTLVVSGRAKYTQAQGSLDSSLFQEYDCVEGAKFGINLTTLLECLQIFGPGSLAQTSVSMAYQEARATFRLTLEEGGVFTSCEIRTIHQDEEAMEFSTLAKAFGRSKEVCRCILKSEILKEAFQELADLNGATSVSVTFGQEAPHLQLSAKGSNGSSEIDFPKSSEAFVCFECTARRVSWTYLMTGMETGMRALGHANETYFRVNEEGILCIQHQIPMSMGQTSFVDVLLCPDIQEMD 387
BLAST of mRNA_L-elsbetiae_contig6287.14912.1 vs. uniprot
Match: A0A6H5JRH0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRH0_9PHAE) HSP 1 Score: 357 bits (917), Expect = 7.930e-115 Identity = 184/222 (82.88%), Postives = 196/222 (88.29%), Query Frame = 2
Query: 638 QVTKDSMTLVVSGKAKYTQAQGCLDHSLFQEYDCVEGAKFGINLTTLLECLQIFGPSSLAQTSVSMAYQEARAMFRLTLEEGGVFTSCEIRTIHQDEDAMEFSALAKAFGNTDEVCRCILKSEILKEAFQELADLNGATTVSVTFGQEAPHLQLSAKGSIGSSEIDFPKTSEAFVFFTCHVPRVSWTYLMSGMETGMRALPHANETYFRVNEEGILCIQHQV 1303
+VTK+SMTLVVSG+AKYTQAQG LD SLFQEYDCVEGAKFGINLTTLLECLQIFG SLAQTSVSMAYQEARA FRLTLE GGVFTSCEIRTIHQDE+AM+FS LAKAFG + EVCRCILK E AFQELADLNGAT+VSVTFGQEA HLQL AKGS GSSEIDFPK+S++ V F C VSW +LM+GMETGMRAL HANETYFRVNEEGILCIQHQV
Sbjct: 65 EVTKESMTLVVSGRAKYTQAQGSLDSSLFQEYDCVEGAKFGINLTTLLECLQIFGRGSLAQTSVSMAYQEARATFRLTLEGGGVFTSCEIRTIHQDEEAMKFSTLAKAFGRSKEVCRCILKGE----AFQELADLNGATSVSVTFGQEATHLQLYAKGSNGSSEIDFPKSSQSLVCFECTARGVSWAFLMTGMETGMRALGHANETYFRVNEEGILCIQHQV 282
BLAST of mRNA_L-elsbetiae_contig6287.14912.1 vs. uniprot
Match: A0A835YYW5_9STRA (Repair protein Rad1/Rec1/Rad17-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YYW5_9STRA) HSP 1 Score: 280 bits (717), Expect = 2.640e-84 Identity = 142/258 (55.04%), Postives = 187/258 (72.48%), Query Frame = 2
Query: 620 QHLQLQQVTKDSMTLVVSGKAKYTQAQGCLDHSLFQEYDCVE-GAKFGINLTTLLECLQIFGPSSLAQTSVSMAYQEARAMFRLTLEEGGVFTSCEIRTIHQDEDAMEFSALAKAFGNTDEVCRCILKSEILKEAFQELADLNGATTVSVTFGQEAPHLQLSAKGSIGSSEIDFPKTSEAFVFFTCHVPRVSWTYLMSGMETGMRALPHANETYFRVNEEGILCIQHQVPMSMGQTSFVDVLLCPDMQDVDMDMDMEE 1390
QH Q + T + +T V++GKAK+TQAQG L LFQ Y+C E G +FGINL+ LLECLQIFG + A S ++AY A F++TLEE GVFTSCE+RT+ ++ DAMEF+ALA AF ++ E CRCI++SE LKEAFQELADL GA ++ Q APHL+LS GS GSS I FP++SEAFV F+C P + W+Y +S +E GMRALP A ET+ R+NEEGI+CIQHQV ++ G ++VD L+C + D+D D + +
Sbjct: 61 QHAQCE-ATPEGLTFVITGKAKFTQAQGALSKDLFQAYECEEDGGRFGINLSMLLECLQIFGMN--ASASAALAYYPGTATFKVTLEENGVFTSCELRTLVEESDAMEFAALAAAFRSSPEECRCIIRSETLKEAFQELADLPGAASIVFEASQHAPHLKLSTSGSYGSSSIQFPRSSEAFVHFSCTPPSLRWSYALSALEGGMRALPFAQETFVRINEEGIMCIQHQVQVA-GHNTYVDFLICANTADIDDDTGLSQ 314
BLAST of mRNA_L-elsbetiae_contig6287.14912.1 vs. uniprot
Match: A0A6H5JQZ4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQZ4_9PHAE) HSP 1 Score: 228 bits (580), Expect = 1.300e-65 Identity = 127/181 (70.17%), Postives = 139/181 (76.80%), Query Frame = 2
Query: 638 QVTKDSMTLVVSGKAKYTQAQGCLDHSLFQEYDCVEGAKFGINLTTLLECLQIFGPSSLAQTSVSMAYQEARAMFRLTLEEGGVFTSCEIRTIHQDEDAMEFSALAKAFGNTDEVCRCILKSEILKEAFQELADLNGATTVSVTFGQEAPHLQLSAKGSIGSSEIDFPKTSEAFVFFTCHV 1180
+VTK+SMTLVVSG+AKYTQAQG LD SLFQEYDCVEGAKFGINLTTLLECLQIFGP SLAQTSVSMAYQE+ + G E++ + +AMEFS LAKAFG + EVCRCILKSEILKEAFQELADLNGAT+VSVTFGQEA HLQLSAKGS GS P +S C V
Sbjct: 65 EVTKESMTLVVSGRAKYTQAQGSLDSSLFQEYDCVEGAKFGINLTTLLECLQIFGPGSLAQTSVSMAYQESD----VPPHPGRGRGVHELQDKNHPPEAMEFSTLAKAFGRSKEVCRCILKSEILKEAFQELADLNGATSVSVTFGQEATHLQLSAKGSNGSRYAMAPPSSHGAPGSRCSV 241
BLAST of mRNA_L-elsbetiae_contig6287.14912.1 vs. uniprot
Match: A0A4D9CMN7_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CMN7_9STRA) HSP 1 Score: 222 bits (566), Expect = 6.530e-63 Identity = 119/260 (45.77%), Postives = 165/260 (63.46%), Query Frame = 2
Query: 638 QVTKDSMTLVVSGKAKYTQAQGCLDHSLFQEYDCV-EGAKFGINLTTLLECLQIFGPSSLAQTSVSMAYQEARAMFRLTLEEGGVFTSCEIRTIHQDEDAMEFSALAKAFGNTDEVCRCILKSEILKEAFQELADLNGATTVSVTFGQEAPHLQLSAKGSIGSSEIDFPKTSEAFVFFTCHVPRVSWTYLMSGMETGMRALPHANETYFRVNEEGILCIQHQVPMSMG-QTSFVDVLLCPDMQDVDMDMDMEEGQEGREE 1411
+V + + +V+G+AK+TQ+QG + +LFQ + C EG F I+L LLECLQ+FG +SL T ++M+Y+ +A RLTLEE GV T+CE+R + EDA + +ALA AF + EV R ILKS++LKEA EL+DL GA +V V+ P+ L+ G G EI PK+SEAFV F C R SW+Y + + GMRAL A ETY R+NEEGI+C+QHQV + Q++F+D L + + + E E REE
Sbjct: 48 EVNNEGIVFIVTGRAKFTQSQGTFNRALFQAFQCQPEGGSFTIDLHLLLECLQVFGAASLTNTMLTMSYEPRKAALRLTLEEQGVLTTCEVRALEAGEDAFDLAALASAFRSRPEVLRAILKSDVLKEAISELSDLPGAGSVRVSVAPHEPNFHLATNGICGGLEIFLPKSSEAFVHFDCSEAR-SWSYGLGALNQGMRALTVAKETYVRINEEGIMCVQHQVENTASRQSTFIDFLCLAEETEEGRGENEEHEDEEREE 306
BLAST of mRNA_L-elsbetiae_contig6287.14912.1 vs. uniprot
Match: A0A7S2WVI5_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WVI5_9STRA) HSP 1 Score: 214 bits (546), Expect = 5.540e-60 Identity = 116/252 (46.03%), Postives = 162/252 (64.29%), Query Frame = 2
Query: 620 QHLQLQQVTKDSMTLVVSGKAKYTQAQGCLDHSLFQEYDCVEGAKFGINLTTLLECLQIFGPSSLAQTSVSMAYQEARAMFRLTLEEGGVFTSCEIRTIH---QDEDAMEFSALAKAFGNTDEVCRCILKSEILKEAFQELADLNGATTVSVTFGQEAPHLQLSAKGSIGSSEIDFPKTSEAFVFFTCHVPRVSWTYLMSGMETGMRALPHANETYFRVNEEGILCIQHQVPMSMGQTSFVDVLLCP-DMQD 1363
+H+ L QV + ++ +AK Q G L +F ++C E F +NL +L+CL +FGP++++ T+++M Y + A+F+LT+EE GVFT C+I+T+ QDED EFS L +F E C+ ILKSE LKEA EL DL+GA+ V V APH QL+A G++G+ EI+FPK+SE FV F+C + +TY + + GMRAL A ET R+N GI+CIQHQV G TSFVD L+CP D+QD
Sbjct: 45 EHIALCQVNDQGLNFSMNQRAKTIQVSGTLPRRVFSSFECHEHGAFCLNLGMVLDCLSLFGPAAISSTAIAMTYSKEDAVFQLTMEEHGVFTRCDIQTLDGSAQDED--EFSQLTSSFRRDPEACKLILKSEFLKEALYELQDLSGASFVDVFISPTAPHFQLAATGNLGTLEIEFPKSSELFVLFSCS-EALRFTYRLEALIRGMRALLVAAETCVRINVVGIMCIQHQVQNHSGVTSFVDFLMCPADLQD 293
BLAST of mRNA_L-elsbetiae_contig6287.14912.1 vs. uniprot
Match: A0A7S2G8B6_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2G8B6_9STRA) HSP 1 Score: 181 bits (460), Expect = 3.080e-48 Identity = 101/254 (39.76%), Postives = 145/254 (57.09%), Query Frame = 2
Query: 620 QHLQLQQVTKDSMTLVVSGKAKYTQAQGCLDHSLFQEYDCVE-GAKFGINLTTLLECLQIFGPSSLAQTS--VSMAYQEARAMFRLTLEEGGVFTSCEIRTIHQDED---AMEFSALAKAFGNTDEVCRCILKSEILKEAFQELADLNGATTVSVTFGQEAPHLQLSAKGSIGSSEIDFPKTSEAFVFFTCHVPRVSWTYLMSGMETGMRALPHANETYFRVNEEGILCIQHQVPMSMGQTSFVDVLLCPDMQD 1363
QH Q Q V ++ + +++ TQ G +D + F E++C + G F IN+ TLL+CL IFGP S V+M++ + L L+E GVFT C+I+ I D D F+ + F C+CI+KSE LKEA EL DLN AT +SV +APH Q+SA+GS+G +I+FP++S+ F F C + Y GMRAL + E+YFR+NE G+LCIQH V G F+D ++ P++ D
Sbjct: 16 QHAQCQ-VHAGGISFSLQSRSRTTQVTGTMDKNCFTEFECYDDGGTFCINICTLLDCLSIFGPQQAGTNSTVVTMSFDKNLCQLILNLDEDGVFTRCDIQAIENDGDEEVGARFAQFSDEFRQKPSPCKCIVKSEQLKEALNELRDLNNATRLSVLLSPQAPHFQISAQGSLGFLDIEFPRSSDLFELFEC-TETMKTEYDYDSFVQGMRALTVSEESYFRINEGGLLCIQHHVETHGGGRCFIDFIMLPNIAD 267
BLAST of mRNA_L-elsbetiae_contig6287.14912.1 vs. uniprot
Match: A0A7S0XDK7_9STRA (Hypothetical protein (Fragment) n=2 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0XDK7_9STRA) HSP 1 Score: 167 bits (422), Expect = 2.120e-43 Identity = 87/222 (39.19%), Postives = 140/222 (63.06%), Query Frame = 2
Query: 701 GCLDHSLFQ---EYDCVEGAKFGINLTTLLECLQIFGPSSLAQTSVSMAYQEARAMFRLTLEEGGVFTSCEIRTIHQDEDAMEFSALAKAFGNTDEVCRCILKSEILKEAFQELADLNGATTVSVTFGQEAPHLQLSAKGSIGSSEIDFPKTSEAFVFFTCHVPRVSWTYLMSGMETGMRALPHANETYFRVNEEGILCIQHQVPMSMGQTSFVDVLLCPDM 1357
G D +F+ E+D E + INLTT ++CL +FG SSL T+ ++ Y A+ +L+LE+ G+ T+C+I T++ D + L AF +++E+C+ ILKSEILKEA +L+D+ GATTV++ + +L G++G EI+FP+ S+ FV F C WTY ++ ++ GM+AL + ET+ R+NEEG++CIQHQ+ + G ++D L+ D+
Sbjct: 5 GYFDDYIFKPINEHDNDERIRIFINLTTFVDCLLLFG-SSLETTAGTITYNSDDALLKLSLEDSGILTTCDISTLYMDNNEDIGYELFSAFLSSNELCQVILKSEILKEAMHDLSDVYGATTVAIEITKNPENLTFMTVGTMGECEIEFPRLSDLFVSFRCDKSS-KWTYPLTSLQLGMKALNISKETFIRMNEEGVICIQHQIETNRGHEIYIDYLMVSDV 224
BLAST of mRNA_L-elsbetiae_contig6287.14912.1 vs. uniprot
Match: F0XY36_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0XY36_AURAN) HSP 1 Score: 135 bits (341), Expect = 4.490e-29 Identity = 84/252 (33.33%), Postives = 130/252 (51.59%), Query Frame = 2
Query: 656 MTLVVSGKAKYTQAQGCLDHSLFQEYDCV-------------EGAKFGINLTTLLECLQIFGPSSLAQTSVSMAYQEARAMFRLTLEEGGVFTSCEIRTIHQDEDAMEFSALAKAFGNTDEVCRCILKSEILKEAFQELADLN-GATTVSVTFGQEAPHLQLSAKGSIGSSEIDFPKTSEAFVFFTCHVPRVSWTYLMSGMETGMRALPHANETYFRVNEEGILCIQHQVP--MSMGQTSFVDVLLCPDMQD 1363
+ L V G++K T A L S F +DCV E F +++ L+ECL++FG + A VS++Y A +F+LTLEE G FTSC++ + D + +A AF + + + S L++ + + G++T+ V+ H +L+A GS+G +ID P+ +AFV F SWTY GM+ALPH++ETY RVN+ G+L +QH V G +++ L C D D
Sbjct: 40 LELHVVGRSKSTHATLTLPVSCFAAFDCVDETGAPFVRGGDQEPIAFSVDVRALVECLKLFGAAG-ADLEVSLSYAPATEVFKLTLEEPGAFTSCDVHVLEDSNDLEGATDMAGAFRDAPTAAKTLATSATLRDVVADFDESAVGSSTIKVSV-----HFRLAASGSVGCVQIDVPR--DAFVVFEAPEETRSWTYQTQAFLHGMKALPHSHETYVRVNDHGMLLVQHMVANDRGAGDNMYLEYLCCSDTDD 283
BLAST of mRNA_L-elsbetiae_contig6287.14912.1 vs. uniprot
Match: A0A8K1C6J7_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C6J7_PYTOL) HSP 1 Score: 125 bits (315), Expect = 8.410e-28 Identity = 74/229 (32.31%), Postives = 120/229 (52.40%), Query Frame = 2
Query: 707 LDHSLFQEYDCVEGAKFGINLTTLLECLQIFGPSSLAQTSVSMAYQEARAMFRLTLEEGGVFTSCEIRTIHQDEDAMEFSALAKAFGNTDEVCRCILKSEILKEAFQELADLNGATTVSVTF-----GQEAPH--LQLSAKGSIGSSEIDFPKTSEAFVFFTCHVPRVS------WTYLMSGMETGMRALPHANETYFRVNEEGILCIQHQVPMSMGQTSFVDVLLCPD 1354
LDH + F +NL+ L+E L +FGP+SL +S+ ++Y A L +E+ GV C ++ + + + + AF + + RCI++SE L +AF EL DL A +V++ G + H L LSA GS EI+F ++S AF+ F C S T+ ++ ++ +AL H+NET+ R+N +G L +QH + G +FVD L+ P+
Sbjct: 116 LDHDDEDDSQLDTQYSFALNLSALIESLSMFGPASLPTSSLRLSYFAESARLTLLVEDNGVICECAMQVLELESNDIAQLEFESAFEQSAVIGRCIMQSEPLHDAFAELYDLPSAASVAIAMYEDDEGPASSHKCLSLSATSETGSCEIEFARSSSAFIEFFCTNDETSDDGSASATFHVAVLQQAFKALGHSNETFLRMNADGFLSVQHMIESGSGDKAFVDALISPE 344
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
Taxonomic scope | Eukaryota |
Seed ortholog score | 436.8 |
Seed ortholog evalue | 8.1e-120 |
Seed eggNOG ortholog | 2880.D7FY66 |
Preferred name | RAD1 |
KEGG ko | ko:K02830,ko:K05665 |
KEGG TC | 3.A.1.208.8 |
KEGG Pathway | ko01523,ko02010,ko04071,ko04111,ko04113,ko04218,ko04977,ko05206,map01523,map02010,map04071,map04111,map04113,map04218,map04977,map05206 |
Hectar predicted targeting category | other localisation |
GOs | GO:0000003,GO:0000075,GO:0000076,GO:0000077,GO:0000228,GO:0000278,GO:0000280,GO:0000723,GO:0000785,GO:0000792,GO:0000793,GO:0000794,GO:0003674,GO:0003676,GO:0003677,GO:0003684,GO:0003690,GO:0003824,GO:0004518,GO:0004527,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005737,GO:0006139,GO:0006259,GO:0006278,GO:0006281,GO:0006289,GO:0006302,GO:0006310,GO:0006725,GO:0006807,GO:0006915,GO:0006950,GO:0006974,GO:0006996,GO:0007004,GO:0007049,GO:0007093,GO:0007095,GO:0007127,GO:0007131,GO:0007154,GO:0007165,GO:0007346,GO:0008150,GO:0008152,GO:0008219,GO:0008408,GO:0008630,GO:0009058,GO:0009059,GO:0009314,GO:0009628,GO:0009987,GO:0010212,GO:0010389,GO:0010564,GO:0010639,GO:0010833,GO:0010948,GO:0010972,GO:0012501,GO:0016043,GO:0016787,GO:0016788,GO:0018130,GO:0019438,GO:0022402,GO:0022414,GO:0023052,GO:0030896,GO:0031570,GO:0031572,GO:0031573,GO:0031974,GO:0031981,GO:0032200,GO:0032991,GO:0033043,GO:0033313,GO:0033314,GO:0033554,GO:0034641,GO:0034645,GO:0034654,GO:0035556,GO:0035825,GO:0035861,GO:0040020,GO:0042592,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0044773,GO:0044774,GO:0044818,GO:0045786,GO:0045835,GO:0045930,GO:0046483,GO:0048285,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0050896,GO:0051128,GO:0051129,GO:0051276,GO:0051321,GO:0051445,GO:0051447,GO:0051598,GO:0051716,GO:0051726,GO:0051783,GO:0051784,GO:0060249,GO:0061982,GO:0065007,GO:0065008,GO:0070013,GO:0071214,GO:0071478,GO:0071479,GO:0071704,GO:0071840,GO:0071897,GO:0090304,GO:0090305,GO:0090734,GO:0097159,GO:0097190,GO:0097193,GO:0104004,GO:0140013,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1901987,GO:1901988,GO:1901990,GO:1901991,GO:1902749,GO:1902750,GO:1903046,GO:1903047,GO:1990421,GO:2000241,GO:2000242 |
EggNOG free text desc. | exodeoxyribonuclease III activity |
EggNOG OGs | KOG3194@1,KOG3194@2759 |
Ec32 ortholog description | Rad1/Rec1/Rad17 |
Ec32 ortholog | Ec-24_003630.1 |
EC | 3.1.11.2 |
COG Functional cat. | V |
Best tax level | Eukaryota |
Best eggNOG OG | NA|NA|NA |
BRITE | ko00000,ko00001,ko01000,ko02000,ko03400 |
Exons | 6 |
Model size | 2284 |
Cds size | 897 |
Stop | 1 |
Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1622816691.8709834-UTR-L-elsbetiae_contig6287:922..1439 | 1622816691.8709834-UTR-L-elsbetiae_contig6287:922..1439 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig6287 923..1439 + |
1691683743.8186262-UTR-L-elsbetiae_contig6287:922..1439 | 1691683743.8186262-UTR-L-elsbetiae_contig6287:922..1439 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig6287 923..1439 + |
1622816691.9503214-UTR-L-elsbetiae_contig6287:5771..6641 | 1622816691.9503214-UTR-L-elsbetiae_contig6287:5771..6641 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig6287 5772..6641 + |
1691683743.8980017-UTR-L-elsbetiae_contig6287:5771..6641 | 1691683743.8980017-UTR-L-elsbetiae_contig6287:5771..6641 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig6287 5772..6641 + |
The following CDS feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1622816691.8820686-CDS-L-elsbetiae_contig6287:1439..1769 | 1622816691.8820686-CDS-L-elsbetiae_contig6287:1439..1769 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig6287 1440..1769 + |
1691683743.8340352-CDS-L-elsbetiae_contig6287:1439..1769 | 1691683743.8340352-CDS-L-elsbetiae_contig6287:1439..1769 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig6287 1440..1769 + |
1622816691.8920379-CDS-L-elsbetiae_contig6287:2457..2532 | 1622816691.8920379-CDS-L-elsbetiae_contig6287:2457..2532 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig6287 2458..2532 + |
1691683743.8442523-CDS-L-elsbetiae_contig6287:2457..2532 | 1691683743.8442523-CDS-L-elsbetiae_contig6287:2457..2532 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig6287 2458..2532 + |
1622816691.9033835-CDS-L-elsbetiae_contig6287:3221..3314 | 1622816691.9033835-CDS-L-elsbetiae_contig6287:3221..3314 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig6287 3222..3314 + |
1691683743.855394-CDS-L-elsbetiae_contig6287:3221..3314 | 1691683743.855394-CDS-L-elsbetiae_contig6287:3221..3314 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig6287 3222..3314 + |
1622816691.9150875-CDS-L-elsbetiae_contig6287:3754..3864 | 1622816691.9150875-CDS-L-elsbetiae_contig6287:3754..3864 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig6287 3755..3864 + |
1691683743.8670285-CDS-L-elsbetiae_contig6287:3754..3864 | 1691683743.8670285-CDS-L-elsbetiae_contig6287:3754..3864 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig6287 3755..3864 + |
1622816691.9280891-CDS-L-elsbetiae_contig6287:4610..4785 | 1622816691.9280891-CDS-L-elsbetiae_contig6287:4610..4785 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig6287 4611..4785 + |
1691683743.8779666-CDS-L-elsbetiae_contig6287:4610..4785 | 1691683743.8779666-CDS-L-elsbetiae_contig6287:4610..4785 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig6287 4611..4785 + |
1622816691.9395368-CDS-L-elsbetiae_contig6287:5657..5771 | 1622816691.9395368-CDS-L-elsbetiae_contig6287:5657..5771 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig6287 5658..5771 + |
1691683743.8892035-CDS-L-elsbetiae_contig6287:5657..5771 | 1691683743.8892035-CDS-L-elsbetiae_contig6287:5657..5771 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig6287 5658..5771 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig6287.14912.1 >prot_L-elsbetiae_contig6287.14912.1 ID=prot_L-elsbetiae_contig6287.14912.1|Name=mRNA_L-elsbetiae_contig6287.14912.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=299bp
MRSAHRAREKSRKLCGPSSLGMSRCTNRPRVTQQQHLQLQQVTKDSMTLV VSGKAKYTQAQGCLDHSLFQEYDCVEGAKFGINLTTLLECLQIFGPSSLA QTSVSMAYQEARAMFRLTLEEGGVFTSCEIRTIHQDEDAMEFSALAKAFG NTDEVCRCILKSEILKEAFQELADLNGATTVSVTFGQEAPHLQLSAKGSI GSSEIDFPKTSEAFVFFTCHVPRVSWTYLMSGMETGMRALPHANETYFRV NEEGILCIQHQVPMSMGQTSFVDVLLCPDMQDVDMDMDMEEGQEGREE* back to topmRNA from alignment at L-elsbetiae_contig6287:923..6641+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_L-elsbetiae_contig6287.14912.1 ID=mRNA_L-elsbetiae_contig6287.14912.1|Name=mRNA_L-elsbetiae_contig6287.14912.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=5719bp|location=Sequence derived from alignment at L-elsbetiae_contig6287:923..6641+ (Laminarionema elsbetiae ELsaHSoW15) CCTCGACAACGCCAAGTCCATCACCACCATCCTTTCCTGCCTCAGCCACG
GCACCCGCAAGGACCAGCAAGCACAGTGCGAGGTATGCCATTTAGGCAAA
GTATGTTTTCTCAAGGTTTACCGACCTCACCTGCTCGCAGTTTACCGGTG
TCGAGAAATTCTGACCTGGTATGTACTGTGCCGATCTCGCGAGTTACCGA
TGGAAATCTAGTTTTTTTAAAGAATGGATCAATGGGAGCTGTTATTCTAC
CCTGCCCGGGTGTACCAGACTCGTTAAGAAGCGCCGTGTATGGAAGCACC
GGCTTTAACCCGCATAGTTCGTGTTTCGCCCACCATGACCCGTCTCCCTA
CATACGTCCAGGCCCATGTCTCGTACGCAATAGGATTTCACCGCTGTGCA
ACTTTTTTTGTTTAGTCTTGCTTGTAATATTACCCATCAGTCGTCTCGGT
CCAGCCTACGAAGAAAGTAAATCGTGTTTTTTTTTCCAAACCTGGCAGTA
GTCTACAAGAGCATTCGATGCGGAGTGCTCACCGTGCACGCGAGAAATCG
CGCAAGCTATGTGGTCCGTCTAGTTTGGGCATGTCCCGGTGCACTAACCG
CCCCAGAGTTACGCAACAACAGCACCTTCAACTACAACAGGTGACAAAGG
ATTCGATGACGCTGGTGGTCTCGGGAAAGGCCAAATACACGCAGGCCCAG
GGCTGCCTAGACCACAGCCTGTTCCAGGAGTACGACTGCGTCGAAGGGGC
AAAGTTCGGCATCAACCTCACCACGCTGCTAGAGTGCCTGCAGATTTTCG
GCCCCAGCTCCCTGGCGCAGACCAGCGTCAGCATGGCCTACCAGGAGGTA
TGATCATGAAGTATCGTTTTCGGTGTTGAAGAGTGCCCGAAACTGCATAT
ATCGCGTTGTAGTTTATGGTGTGCTAGATCGATGACGAGAACCATGAGCC
CGTATCAAAGGCGTACCATTCCTCGATCAAGCAGCTCATTGTAAGCCACA
AACCTCAGCCATTATGTTGCTCCTATTATGTTTGCGTGGTCAGGACCTAC
CTACGTACCTGAAGCAGAAGTTTTCTCGGGGAGGGGGTGGGTGTCATTTC
ACGTTTTTGTTCCTGTTTTCCGCAGTGTGTAGCGTGCTTTTGTGCTGCGG
CTGCTGCTTCTGTGATTGATTCCGCCTGCCCCTGCTGGCTCTCGCGATAT
GTAAGATGGTATCGGAGAGGAACATTTATGGTAATGTAGAGTATCGAAAT
ATTAATATTATCATGCAGCTAGGGATTTAGTGTTAACATCAAGTATGATA
TGTACGTGTGGGATGGGTGGGTGTGTTTGTTGGGTCTATCTGCAATTGTC
GGGGGGCGAACAAAATAATACTAGTAGTAAAGACTAAGTATTCTCACCCG
TCTCTCTGTGCGAGAGACGCTGGCCTCTCCGGACGCGACTGGATTATCTA
TGTAAGTACATAGAAGTACCTATGTATGTGCTTACACAGCTCGACACCTT
CTTCCCGGCACTCTCCCTTCAACGCTCGAGAGCAGGCCAGAGCAATGTTC
CGGCTGACTCTGGAGGAGGGCGGGGTGTTCACCAGCTGCGAGATAAGGAC
CATCCACCAGGTGCCGGAATGGAAGCGCGTGCTACGTTACATAAGAGCTT
TGGTTTTTGACCGCATGCATGTCGGGCGGGTGTATTTGTTCTTGAACTAA
TTCCCTTGCCTGGTTGAGGTCGTGCAAAGAAAGTCACGCAAACAGAGTGG
GACGTTCGTAGTCTGGCCATTCGGTGTTAAAAGTTCGCTGGAAAATGAAG
CGTTTTTGGCCGGGCAGAACTAACCACCTCTGTACTGATTCTCTGCAACA
TATGTAGTATCTCCGTTATATTCCGTTTCGTTTTTTTGTGGGTTTCCCGC
CCTAATTTAGTTAGGGAGAACCAGCGGGTTTTCCAAGGTATGCGGGGATT
TTGTCCCTAAATTTAGACGCAGCTACTTGTAAGCGTTGGACTTGCCACTA
TCTCACCCAGTAGCTTTTCATTCCCATGTCTTTCATTTTTTCTCTGATTT
TTGATGCAACAGCAAGCGGCCGGACTCATAATTTAGCGGCAATGTGTCTG
GCGTTTTGGCGCCCCTTGAGTCCCACTGTTTTGGCGACGTTGTCCACTTG
TATTATATTCTGCTTTTGTTTTTTGGTTTTTTTAGCGCCCCGGAAAACCA
ACGAAACAGTTCGCGTGTATTTTCAGCTTTTGTTTCGGTGTTGATGGTCA
ACGTTGTCGCGCGGGGGGGGTATTCCGCTTGGTTTTTCCTACGCGCCAGG
ACGAGGACGCGATGGAGTTCTCGGCTCTTGCGAAGGCGTTCGGCAACACC
GACGAGGTCTGCCGGTGCATCCTCAAGTCAGAGATCCTCAAGGTTAGTCC
GACCCAAAGTAGGTATGAGAGTGTACCTTGTACCCTATGGTACCTCGAAG
CACCCGCTGTGATGCGTTTGGCGGTGGCTGGATAGATTCTTGAACCTGCG
GCATGGCCCTTGCACGCCACCCACGCGCGTGTTTGCCGTCGTCACAAGGC
GTGCGACTGCCGGATTTGTGCTGGACCGCCTACATACGCCGGAAATTGAG
CTTATCTAGGACAATGACCTTAACCCTAACCCTAACCCCAACCACCGACC
CCCCTTTCCCGGTGTCCATGATTTATCTCATATGCTAGCTGAAGACGAAC
ATCCTGCGTAGGCTACTGTTTGTGCTTGGGCCAGGGTCCTCTTTCCACGA
CTCTTTCGGGGTACAGCCTATATGAATAAGACGCGAACAACCCAACAGCA
ACAACAACAACAACCTACGTCCGCCGCTCCAGGAAGCGTTTCAAGAGCTC
GCCGACTTGAACGGCGCTACCACCGTGTCGGTGACCTTCGGACAAGAGGC
TCCGCACCTGCAGCTTTCCGCTAAGGGCTCGATCGGCTCGAGGTACGAAC
ACGGTTGGGTGTGGCTTTTGGGCGCTTTGTCGCGTCCGTTCTTTGGTCGT
TCTGTACGCCAATATTATGTACGCCAGTCTTGAACGTTTGGGCGGATCGT
GGGCGTACAGTCTTTGTGTGTGATGCGTATGCACCGAGAAGAGAGAGTGT
CTTATTTCTGCAGCACTTGCATTTGCACGCGAGCACTTTGGGGGGAGGGA
TATCGGTCGAAGTTCTGTATATAGAGTGGAGGAATGGCAAATGCATCGGG
AGGCCTATTGGATGGTTATGGTTTGAACTACAGTCACAGCATTTATACTG
ACTCTCAACCGATTAGACTCCCCTATCTGGGGTCTCGTGGAGTAGGGGAA
ATTCGCCTTTGGCTGTTGGGCTTTTTTCTCGGGTGTGTCCGCGTTGTGTC
ACGCCGCGCAACCCCCGGCAGGATGAATCCCTGAATTATCGTATGTACAT
ACTTTTGTTGCGGCCGATGCCGGTGCCGGTGCCGGTGTTGCTGTTGCTGT
GACAGTCCCGTTACTGTTGCTGTGACAGTCCCGTTGCTGTTGCGGCTGTT
GCTGTGTCTTGCTGTTGCTGCCGTGAGGTAGGTAGCAGCTCCCAACAGCA
GTTGCGAAGGCCTGCCTCACCAACCCCCGTGTAAAGTTTTCGTTGCATAT
TGCGTGCATTTTTGCCGTCCCCTTGTGTACGACGTGTCACGCTCGCGTCA
CGCCACGCCACGCCACACCACGCCACGCCAACGACCAGCGAAATTGACTT
CCCGAAGACCTCGGAGGCCTTCGTGTTCTTCACGTGCCACGTGCCGCGGG
TGTCGTGGACGTATCTCATGAGCGGGATGGAGACCGGCATGAGAGCACTC
CCACATGCGAACGAGACTTACTTCCGAGTCAACGAGGAGGGGATCCTGTG
CATACAGCATCAGGTAAGCTTATGTATGTACGGTATTTCTCTGCGCACGT
CAAAAGTCAAATTAGTTGATTAAGGGGGCTAGAAATTTAGCTATTCGCGG
ACAATTTTCAGTTTTTGCTTGTGCGCGCAAGTTATTCGAGTTGTGTGTCA
TTCTTCGAGGTACGTATTGTATGGCCTCAAAAATGTTTTTTTTTCTGCAA
AGGAGGCTGAACAGCGCTTCTTGTGTATGAGCGTGTTATTTTGACACTCA
ATGGTTATACATGCTTATGTACGTGCCAACTACATAGGAACGCATCCTGT
GTACAAAGCAGCATTTGACACTCTTGGGCACTCCCGCATTCCACTGTAGC
GAAAGGGCGCAGCGCAACAATGTTATGGCCTTGACACTCTTAGGCGCTTC
CCCGCATTCCACTGTGTAATTTTCGAATGGGCCCAACAATGTCATGGTCG
CGAGCGCTGCCATCTTAGAATGAAACTGTCGTGGCCATCTGTGTTACTGC
GAAAGGGCGCAGCGCAACAATGTTATGGCCTCGGCACTCTTAGGCGCTTC
CCCGCATTCCACTGTGTAGCTTTCGAAGGGGCCCAACACTGTTATGGTTG
TGAGCCCTGCCATTTTAGAATGAAACTGTCGTGGTCATCGGTGTTACTGC
GAGTTGCTTGAGTGCGTTCTGAACAAAGCATATATTACGTCACTACATAG
ATCTATGGAATACCGGTTGAACCCCACGGATCCCGTCTTAAATGTGGGCT
AGGTTCCGTTTTTGACTATCTGATTTATCTTTCAAAATAAACCGAAGCAG
ATGGCACCCGCGCATCGTATCCGAGATTGACGCCTCGCTGCACGTCCCAC
CCACCCACCCACTCCCGCCTTAAAAAATGAAATAGGTGCCCATGAGTATG
GGACAGACGAGCTTCGTCGACGTTCTCCTCTGCCCGGACATGCAAGACGT
CGACATGGACATGGACATGGAGGAAGGGCAGGAGGGTCGGGAAGAGTAAA
TGTATTGTTGCTTGTGTGCTGTCTGTTCGGAGTGTGGGAGTGGTTCTGCT
GTGTTTCGGCGCTGCTTGCTGTCGGAGAGAGCGCGAATTGTGGATGCAGC
AACGGCCTTCTCTCAGGAGTGTGGTTATTTTTGGGCCTGTGTCGATGTGC
CGGGAGCGGAGAGTGGCCGAACAGTTGGGTGAGAGCGTGTTGTTGTTGTT
GGGCCTGTGTCGATGTGCTGGGAGCGGATGAGTGGTCGAGCAGTTGGGTG
AGAGCGGGTCACGAGACCCCCCCCCTTTTGTGGAGGCAGTAGTCTACGCG
GGGTTTTTGTCTTAAGCTAACATATGAGATAAAGTATGGAAACCGTTTGG
GGGGGTCGGTGGTTGGGGTTAGGGTTAGGGTTAGGGTTAGAGTTAGTAGT
ATAAAATTAATTTCTGCGTAGGCGGTCCTGTGGAGGTCGTTTGGGAGCGC
TTCGCGGATGAGTGAAAAAATACGCTATTTGTTGTACATACAAGCAGGTG
GGAGAATGAGAAAAACCAAGCATGAGGTGTTAGTCCTGCGGATGGCTGCA
AAGCAGCGGTTTGCGCTCTCTCTCCGCTGAGAAGTGCTCTTTATGGTCAT
TTTTGCGATTTGGGCAACCCTCGCACGAATTGGGTGGTTTCGACTCGAAA
TGCCTTCTTTTTCCGGTCTGCAGTCGTGAACGTGGTGTATCCTGCTTGAA
TGTTTGGTTGATATTTACGTTTTGGTTTGAAGCTTCAGAGCTAGTTTCTG
TTGTGTCTGTAGTGATTGGAAAGGTGCTCGTCCTTTTTTTGTTTGTTTTT
TTTGGGGAAGGGGTCGCACAATTGTAGAAATTAATGCAGTACTTCTTCTA
CATATGTACCTTGCGTGTC back to topCoding sequence (CDS) from alignment at L-elsbetiae_contig6287:923..6641+ >mRNA_L-elsbetiae_contig6287.14912.1 ID=mRNA_L-elsbetiae_contig6287.14912.1|Name=mRNA_L-elsbetiae_contig6287.14912.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1794bp|location=Sequence derived from alignment at L-elsbetiae_contig6287:923..6641+ (Laminarionema elsbetiae ELsaHSoW15) ATGCGGAGTGCTCACCGTGCACGCGAGAAATCGCGCAAGCTATGTGGTCC GTCTAGTTTGGGCATGTCCCGGTGCACTAACCGCCCCAGAGTTACGCAAC AACAGCACCTTCAACTACAACAGGTGACAAAGGATTCGATGACGCTGGTG GTCTCGGGAAAGGCCAAATACACGCAGGCCCAGGGCTGCCTAGACCACAG CCTGTTCCAGGAGTACGACTGCGTCGAAGGGGCAAAGTTCGGCATCAACC TCACCACGCTGCTAGAGTGCCTGCAGATTTTCGGCCCCAGCTCCCTGGCG CAGACCAGCGTCAGCATGGCCTACCAGGAGATGCGGAGTGCTCACCGTGC ACGCGAGAAATCGCGCAAGCTATGTGGTCCGTCTAGTTTGGGCATGTCCC GGTGCACTAACCGCCCCAGAGTTACGCAACAACAGCACCTTCAACTACAA CAGGTGACAAAGGATTCGATGACGCTGGTGGTCTCGGGAAAGGCCAAATA CACGCAGGCCCAGGGCTGCCTAGACCACAGCCTGTTCCAGGAGTACGACT GCGTCGAAGGGGCAAAGTTCGGCATCAACCTCACCACGCTGCTAGAGTGC CTGCAGATTTTCGGCCCCAGCTCCCTGGCGCAGACCAGCGTCAGCATGGC CTACCAGGAGGCCAGAGCAATGTTCCGGCTGACTCTGGAGGAGGGCGGGG TGTTCACCAGCTGCGAGATAAGGACCATCCACCAGGCCAGAGCAATGTTC CGGCTGACTCTGGAGGAGGGCGGGGTGTTCACCAGCTGCGAGATAAGGAC CATCCACCAGGACGAGGACGCGATGGAGTTCTCGGCTCTTGCGAAGGCGT TCGGCAACACCGACGAGGTCTGCCGGTGCATCCTCAAGTCAGAGATCCTC AAGGACGAGGACGCGATGGAGTTCTCGGCTCTTGCGAAGGCGTTCGGCAA CACCGACGAGGTCTGCCGGTGCATCCTCAAGTCAGAGATCCTCAAGGAAG CGTTTCAAGAGCTCGCCGACTTGAACGGCGCTACCACCGTGTCGGTGACC TTCGGACAAGAGGCTCCGCACCTGCAGCTTTCCGCTAAGGGCTCGATCGG CTCGAGGAAGCGTTTCAAGAGCTCGCCGACTTGAACGGCGCTACCACCGT GTCGGTGACCTTCGGACAAGAGGCTCCGCACCTGCAGCTTTCCGCTAAGG GCTCGATCGGCTCGAGCGAAATTGACTTCCCGAAGACCTCGGAGGCCTTC GTGTTCTTCACGTGCCACGTGCCGCGGGTGTCGTGGACGTATCTCATGAG CGGGATGGAGACCGGCATGAGAGCACTCCCACATGCGAACGAGACTTACT TCCGAGTCAACGAGGAGGGGATCCTGTGCATACAGCATCAGCGAAATTGA CTTCCCGAAGACCTCGGAGGCCTTCGTGTTCTTCACGTGCCACGTGCCGC GGGTGTCGTGGACGTATCTCATGAGCGGGATGGAGACCGGCATGAGAGCA CTCCCACATGCGAACGAGACTTACTTCCGAGTCAACGAGGAGGGGATCCT GTGCATACAGCATCAGGTGCCCATGAGTATGGGACAGACGAGCTTCGTCG ACGTTCTCCTCTGCCCGGACATGCAAGACGTCGACATGGACATGGACATG GAGGAAGGGCAGGAGGGTCGGGAAGAGTAAGTGCCCATGAGTATGGGACA GACGAGCTTCGTCGACGTTCTCCTCTGCCCGGACATGCAAGACGTCGACA TGGACATGGACATGGAGGAAGGGCAGGAGGGTCGGGAAGAGTAA back to top
|