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Homology
BLAST of mRNA_L-elsbetiae_contig6286.14910.1 vs. uniprot
Match: D7FIE4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FIE4_ECTSI) HSP 1 Score: 372 bits (956), Expect = 1.190e-125 Identity = 203/348 (58.33%), Postives = 243/348 (69.83%), Query Frame = 3
Query: 12 MIDQDYAELLGRSPPTGDLLEWTFPASALANAFVSLLIGTPALCLALYVA--AGEGDHVSGSVEFRVPTLTRLSIRDTPIGEVYTAGMHLAAAMAIPLFWCVKLSHHQRLQARTGVTRYDLQAEDAVWWVKTAWVVGTLGATLLFAAASVPGDREGSSSSAQGVLHLVLSLLAAGGLIGQTACTAWALRKARRVFVVSEADLVAYRRKVVLASVAVVAALAAVSSVLLVECFADGACGVGYVKSGXXXXXXXXXXXXXXXXXXXXXXMVDFGAGGGDADVAHGAVARNG----TVHHRRDCGSEWCYSRSLMGLWEWLLLLVEAGFCIALRHDLAPATAGVGVESFVL 1037
MIDQDYAELLGRSPP+G++LEWTFPA ALA+AFV LL+GTPALC LY+ + E G E R+PTLT+L +R+ P+G + AG+ LAA +A+PLFWCVKL+HHQRLQARTGV RYD++AE A+ WV AW+ G LGA L++AAASVPG+ EG+S S QGV HLVL+ AA G++GQ CTAWALRKAR VFVVS+ DLVAY+RK+ LAS A + A AV SVL+VEC G +G+ G G GG D + A AV V RDC +EWCYSRSL+GLWE+LLL VEAGFC+ALRHDLAPAT GVGVESFVL
Sbjct: 1 MIDQDYAELLGRSPPSGEVLEWTFPARALADAFVLLLVGTPALCCTLYMTGFSREESFHGGGAELRIPTLTQLGMRNNPVGFTFRAGIQLAAVVAVPLFWCVKLAHHQRLQARTGVARYDIEAEGAIRWVSGAWITGALGAMLMYAAASVPGE-EGASFSPQGVTHLVLTTSAACGILGQAVCTAWALRKARLVFVVSDGDLVAYKRKLWLASTAAIVAAVAVLSVLIVECVEGGTWNMGWSIRGGAGAFVGGGGSSS-------------GVGGFDDETA--AVGDQDRWEDNVSSSRDCDTEWCYSRSLLGLWEYLLLAVEAGFCMALRHDLAPATGGVGVESFVL 332
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
Hectar predicted targeting category | signal anchor |
Ec32 ortholog description | expressed unknown protein |
Ec32 ortholog | Ec-11_001590.1 |
Exons | 5 |
Model size | 1040 |
Cds size | 1029 |
Stop | 1 |
Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1622816691.7787004-UTR-L-elsbetiae_contig6286:4227..4238 | 1622816691.7787004-UTR-L-elsbetiae_contig6286:4227..4238 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig6286 4228..4238 + |
1691683743.7520337-UTR-L-elsbetiae_contig6286:4227..4238 | 1691683743.7520337-UTR-L-elsbetiae_contig6286:4227..4238 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig6286 4228..4238 + |
The following CDS feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1622816691.7887723-CDS-L-elsbetiae_contig6286:4238..4430 | 1622816691.7887723-CDS-L-elsbetiae_contig6286:4238..4430 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig6286 4239..4430 + |
1691683743.7636013-CDS-L-elsbetiae_contig6286:4238..4430 | 1691683743.7636013-CDS-L-elsbetiae_contig6286:4238..4430 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig6286 4239..4430 + |
1622816691.7993689-CDS-L-elsbetiae_contig6286:5301..5402 | 1622816691.7993689-CDS-L-elsbetiae_contig6286:5301..5402 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig6286 5302..5402 + |
1691683743.7762432-CDS-L-elsbetiae_contig6286:5301..5402 | 1691683743.7762432-CDS-L-elsbetiae_contig6286:5301..5402 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig6286 5302..5402 + |
1622816691.8141315-CDS-L-elsbetiae_contig6286:5654..5930 | 1622816691.8141315-CDS-L-elsbetiae_contig6286:5654..5930 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig6286 5655..5930 + |
1691683743.7866244-CDS-L-elsbetiae_contig6286:5654..5930 | 1691683743.7866244-CDS-L-elsbetiae_contig6286:5654..5930 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig6286 5655..5930 + |
1622816691.8251998-CDS-L-elsbetiae_contig6286:6377..6643 | 1622816691.8251998-CDS-L-elsbetiae_contig6286:6377..6643 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig6286 6378..6643 + |
1691683743.7980886-CDS-L-elsbetiae_contig6286:6377..6643 | 1691683743.7980886-CDS-L-elsbetiae_contig6286:6377..6643 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig6286 6378..6643 + |
1622816691.8383508-CDS-L-elsbetiae_contig6286:6907..7101 | 1622816691.8383508-CDS-L-elsbetiae_contig6286:6907..7101 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig6286 6908..7101 + |
1691683743.807018-CDS-L-elsbetiae_contig6286:6907..7101 | 1691683743.807018-CDS-L-elsbetiae_contig6286:6907..7101 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig6286 6908..7101 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig6286.14910.1 >prot_L-elsbetiae_contig6286.14910.1 ID=prot_L-elsbetiae_contig6286.14910.1|Name=mRNA_L-elsbetiae_contig6286.14910.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=343bp
MIDQDYAELLGRSPPTGDLLEWTFPASALANAFVSLLIGTPALCLALYVA AGEGDHVSGSVEFRVPTLTRLSIRDTPIGEVYTAGMHLAAAMAIPLFWCV KLSHHQRLQARTGVTRYDLQAEDAVWWVKTAWVVGTLGATLLFAAASVPG DREGSSSSAQGVLHLVLSLLAAGGLIGQTACTAWALRKARRVFVVSEADL VAYRRKVVLASVAVVAALAAVSSVLLVECFADGACGVGYVKSGGGSSIIS NGFGGGGGGRGGGGGMVDFGAGGGDADVAHGAVARNGTVHHRRDCGSEWC YSRSLMGLWEWLLLLVEAGFCIALRHDLAPATAGVGVESFVL* back to topmRNA from alignment at L-elsbetiae_contig6286:4228..7101+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_L-elsbetiae_contig6286.14910.1 ID=mRNA_L-elsbetiae_contig6286.14910.1|Name=mRNA_L-elsbetiae_contig6286.14910.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2874bp|location=Sequence derived from alignment at L-elsbetiae_contig6286:4228..7101+ (Laminarionema elsbetiae ELsaHSoW15) AAGGGACAGGGATGATTGATCAGGACTATGCTGAGCTCCTGGGTCGCTCC
CCCCCCACCGGAGACTTGTTGGAGTGGACGTTTCCTGCCTCTGCGTTGGC
AAATGCTTTCGTTTCGCTGCTGATAGGAACCCCTGCGCTGTGCTTGGCGC
TTTACGTTGCGGCCGGGGAGGGCGATCATGTCAGCGGCAGTGTTGAGTTC
CGGGTGAGCGTAACCGCCAGCTCGAAGAGCGATCCTGATGCTGTAGATGG
TGGAAGCATTCCTGCGGCGTGCGTAGTGCTCAAATGTATGTACATACATA
CATACGAGGACGAAAGATCGGGGAGGGAGAGAGATACCGCAGGGCGCGAG
AGGAGAACGTTCGCCACAGCAGCAGCAGCACTAGAAGTCTACAGCATTAG
TAACTTCCTCGGGTATCCATCGCCGCCCTTATTGTTTGGTGCGGATTGCG
AGTAGTTCATGCACAACTAGGTTGGAAACAGGGACGCAAAAACACGCGCG
GGACACGCATCGACACCGTCTTGTGTATTTCACTTACAACTCTGCTGTTC
ATGAACTGCCGCTCATGAGCCCATGAGCCCTACTTTGCTGCTGTCCACCT
GACTAGAAAGGATGGAGGACCATTGCATCGCATGAAGGCATAAACTGACA
CGGTTGCCGACCTTCATGCGCAGTGTTGAAGCCCAGCCATCCCTTATCTC
GTTTGTCACGCCCTGTAGATCTTTCCCTCCTCCATATGTATGTATGTACA
GGTATTTTTACCGCAGGTGACTTAAGATAACACCCCCCCTCTGGACCGAG
TTTAAGAGCTCCATTACTCCGTAACGAATGGTGCCGGCACCAAACGACAC
ATTTCCGGACAGCCCTCGGCTAGGTCTTTCCAACCCCACCCCCTTTCGGC
ACTGGCACTCTTCTTGCTGAGGAGGAACCGAGCTTGAAAAACTGCCCAGG
AGGGGGAATGGTTTCTTGTGTCACTCACGGCGGTACTGCTGTATACTGTT
GTACATACCCTGCTGGGTTTGCATTGATGGCAAGTATCGTATCCGCGTGC
CATGCACTCTCTCTCTCATCGCAGGTCCCCACCCTGACGCGGCTCAGCAT
CCGCGACACCCCCATCGGAGAAGTCTACACCGCGGGCATGCACCTGGCTG
CCGCGATGGCTATCCCCCTCTTCTGGTGAGCCTTCTCGCGCGGGGAAACC
GAGCTGCCGTTTGGAGCGTTAGAGCCAGCCATGCCTTTCGGGGGGCGCCT
GGCTGATGTGTTGCGCCAATGTTTTCATGGGCGCTAACTCTTTGTCTTAT
GCAGTCAGTATCTGGGGCGCGCGCGCGCACGCACGCACACACACACACAC
ACACACACACACACACACACACACGAACTGACACACGTGCACACCGATTA
CCCCGTCCCCGACGTCGAAAAACCCAGGTGCGTCAAGCTGTCCCACCACC
AGCGGCTGCAGGCCCGGACGGGGGTGACGCGCTACGACCTGCAGGCGGAG
GACGCCGTGTGGTGGGTCAAGACCGCCTGGGTCGTCGGCACGCTGGGCGC
CACCCTCCTCTTCGCCGCCGCCAGCGTGCCGGGGGACAGGGAGGGCTCGT
CCTCCTCGGCGCAGGGCGTCCTGCACCTGGTGCTGTCTTTGCTGGCGGCG
GGCGGGCTGATCGGCCAGACGGCGTGCACGGCGTGGGCGCTCCGGAAGGC
CAGGTGGGGGTGGTGGTGGTGGTGGTGGTGGTGAGTCGGGAGGCAAGGGG
GGGGGTCGTCGATTTTGTCGGCTCTTACTGCTGCGCGTTGTTGGTTTCGT
TGGTAGATGTTGGTGCTGTGTTTGTTGGGGTATTGGTGTGTGCTGGGTAC
TTGCTGGTGGAGTTTTCTTCTTTTCTGACCGGGCGACGGAGGAAATTGTT
TCTGATCCGGAGCGGAAAGCATAAATGATATAAATTGAAACAAACCACTC
GATTACAACGCCACTGTGTTTACCCTCACAAAAGGTATACGACTGGAGTT
AGAAATACACATGGTTCATGGTTGGGTCTGAAAAACTAGCGCGCGGGGTG
GGGCAGTCACAAGTCGAACGAACTACCCCGCTCTTGGGGTCCATCTTCTT
CTCTCCCCTTCTAATGGATGCGGTGTTTGTTTTTGTGCGTTTTGTGACAG
GCGAGTGTTCGTGGTGTCCGAGGCTGACCTGGTGGCCTACCGCCGGAAGG
TTGTCCTGGCGTCGGTGGCGGTTGTGGCCGCGCTGGCCGCCGTCTCCTCG
GTGCTGCTGGTGGAGTGCTTTGCGGACGGCGCGTGTGGAGTCGGGTACGT
TAAGAGCGGCGGCGGCAGCAGCATCATCAGCAACGGTTTTGGCGGCGGCG
GCGGCGGCCGCGGAGGTGGCGGTGGCATGGTCGATTTCGGCGCGGGCGGA
GGCGACGCGGACGTAGGTGACAGCAGTCTCATCTCGGACGAGCGCAGTGC
CGTGATTTTTGGCGACGGCGCCTTTCCCGCCGTCGGTGGCGGTAGCGGGA
GTAAAACCCGCGGGGATTTGTACGAGGAGGAGGAGGAGGAGGAGGAGGGT
GGTGCGAGCTTCTTAACTCCCACCGCTTCCGCCGATGGCGGTCTGTCCGC
CGAAGAGTCGATGGCCGTCTCGGCGGCGGCCGGGGTGGTAGCGGCCGCGG
CAACGGCGGTGGCGGTGCCGCCAGAAGCAGCACACGGTGCGGTTGCCAGG
AACGGCACCGTCCACCACAGGCGGGACTGCGGCTCCGAGTGGTGCTACTC
CAGGAGCCTCATGGGCTTGTGGGAGTGGCTGCTGCTGCTGGTTGAGGCCG
GGTTCTGCATCGCGCTGAGGCACGACCTCGCGCCCGCTACGGCCGGCGTC
GGAGTGGAGAGCTTCGTGCTGTGA back to topCoding sequence (CDS) from alignment at L-elsbetiae_contig6286:4228..7101+ >mRNA_L-elsbetiae_contig6286.14910.1 ID=mRNA_L-elsbetiae_contig6286.14910.1|Name=mRNA_L-elsbetiae_contig6286.14910.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2058bp|location=Sequence derived from alignment at L-elsbetiae_contig6286:4228..7101+ (Laminarionema elsbetiae ELsaHSoW15) ATGATTGATCAGGACTATGCTGAGCTCCTGGGTCGCTCCCCCCCCACCGG AGACTTGTTGGAGTGGACGTTTCCTGCCTCTGCGTTGGCAAATGCTTTCG TTTCGCTGCTGATAGGAACCCCTGCGCTGTGCTTGGCGCTTTACGTTGCG GCCGGGGAGGGCGATCATGTCAGCGGCAGTGTTGAGTTCCGGATGATTGA TCAGGACTATGCTGAGCTCCTGGGTCGCTCCCCCCCCACCGGAGACTTGT TGGAGTGGACGTTTCCTGCCTCTGCGTTGGCAAATGCTTTCGTTTCGCTG CTGATAGGAACCCCTGCGCTGTGCTTGGCGCTTTACGTTGCGGCCGGGGA GGGCGATCATGTCAGCGGCAGTGTTGAGTTCCGGGTCCCCACCCTGACGC GGCTCAGCATCCGCGACACCCCCATCGGAGAAGTCTACACCGCGGGCATG CACCTGGCTGCCGCGATGGCTATCCCCCTCTTCTGGTCCCCACCCTGACG CGGCTCAGCATCCGCGACACCCCCATCGGAGAAGTCTACACCGCGGGCAT GCACCTGGCTGCCGCGATGGCTATCCCCCTCTTCTGGTGCGTCAAGCTGT CCCACCACCAGCGGCTGCAGGCCCGGACGGGGGTGACGCGCTACGACCTG CAGGCGGAGGACGCCGTGTGGTGGGTCAAGACCGCCTGGGTCGTCGGCAC GCTGGGCGCCACCCTCCTCTTCGCCGCCGCCAGCGTGCCGGGGGACAGGG AGGGCTCGTCCTCCTCGGCGCAGGGCGTCCTGCACCTGGTGCTGTCTTTG CTGGCGGCGGGCGGGCTGATCGGCCAGACGGCGTGCACGGCGTGGGCGCT CCGGAAGGCCAGGTGCGTCAAGCTGTCCCACCACCAGCGGCTGCAGGCCC GGACGGGGGTGACGCGCTACGACCTGCAGGCGGAGGACGCCGTGTGGTGG GTCAAGACCGCCTGGGTCGTCGGCACGCTGGGCGCCACCCTCCTCTTCGC CGCCGCCAGCGTGCCGGGGGACAGGGAGGGCTCGTCCTCCTCGGCGCAGG GCGTCCTGCACCTGGTGCTGTCTTTGCTGGCGGCGGGCGGGCTGATCGGC CAGACGGCGTGCACGGCGTGGGCGCTCCGGAAGGCCAGGCGAGTGTTCGT GGTGTCCGAGGCTGACCTGGTGGCCTACCGCCGGAAGGTTGTCCTGGCGT CGGTGGCGGTTGTGGCCGCGCTGGCCGCCGTCTCCTCGGTGCTGCTGGTG GAGTGCTTTGCGGACGGCGCGTGTGGAGTCGGGTACGTTAAGAGCGGCGG CGGCAGCAGCATCATCAGCAACGGTTTTGGCGGCGGCGGCGGCGGCCGCG GAGGTGGCGGTGGCATGGTCGATTTCGGCGCGGGCGGAGGCGACGCGGAC GTAGGCGAGTGTTCGTGGTGTCCGAGGCTGACCTGGTGGCCTACCGCCGG AAGGTTGTCCTGGCGTCGGTGGCGGTTGTGGCCGCGCTGGCCGCCGTCTC CTCGGTGCTGCTGGTGGAGTGCTTTGCGGACGGCGCGTGTGGAGTCGGGT ACGTTAAGAGCGGCGGCGGCAGCAGCATCATCAGCAACGGTTTTGGCGGC GGCGGCGGCGGCCGCGGAGGTGGCGGTGGCATGGTCGATTTCGGCGCGGG CGGAGGCGACGCGGACGTAGCACACGGTGCGGTTGCCAGGAACGGCACCG TCCACCACAGGCGGGACTGCGGCTCCGAGTGGTGCTACTCCAGGAGCCTC ATGGGCTTGTGGGAGTGGCTGCTGCTGCTGGTTGAGGCCGGGTTCTGCAT CGCGCTGAGGCACGACCTCGCGCCCGCTACGGCCGGCGTCGGAGTGGAGA GCTTCGTGCTGTGACACACGGTGCGGTTGCCAGGAACGGCACCGTCCACC ACAGGCGGGACTGCGGCTCCGAGTGGTGCTACTCCAGGAGCCTCATGGGC TTGTGGGAGTGGCTGCTGCTGCTGGTTGAGGCCGGGTTCTGCATCGCGCT GAGGCACGACCTCGCGCCCGCTACGGCCGGCGTCGGAGTGGAGAGCTTCG TGCTGTGA back to top
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