mRNA_L-elsbetiae_contig6286.14909.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6286.14909.1
Unique NamemRNA_L-elsbetiae_contig6286.14909.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6286.14909.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6286contigL-elsbetiae_contig6286:3806..4119 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size314
Cds size309
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816691.7110188-UTR-L-elsbetiae_contig6286:3805..38101622816691.7110188-UTR-L-elsbetiae_contig6286:3805..3810Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6286 3806..3810 +
1691683743.7162797-UTR-L-elsbetiae_contig6286:3805..38101691683743.7162797-UTR-L-elsbetiae_contig6286:3805..3810Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6286 3806..3810 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816691.721058-CDS-L-elsbetiae_contig6286:3810..41191622816691.721058-CDS-L-elsbetiae_contig6286:3810..4119Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6286 3811..4119 +
1691683743.7281706-CDS-L-elsbetiae_contig6286:3810..41191691683743.7281706-CDS-L-elsbetiae_contig6286:3810..4119Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6286 3811..4119 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6286.14909.1prot_L-elsbetiae_contig6286.14909.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6286 3811..4119 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6286.14909.1

>prot_L-elsbetiae_contig6286.14909.1 ID=prot_L-elsbetiae_contig6286.14909.1|Name=mRNA_L-elsbetiae_contig6286.14909.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=103bp
MLRRLPSPATPNQALSSQANLAAVKLPAVAVAGTPEDASTRGAPRGRLRD
TCPQTAAPFTKAGVDEAQSCTVDSTFLLQRTATAITNRERIAVLISTTAV
AF*
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mRNA from alignment at L-elsbetiae_contig6286:3806..4119+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6286.14909.1 ID=mRNA_L-elsbetiae_contig6286.14909.1|Name=mRNA_L-elsbetiae_contig6286.14909.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=314bp|location=Sequence derived from alignment at L-elsbetiae_contig6286:3806..4119+ (Laminarionema elsbetiae ELsaHSoW15)
CTCGCATGCTTCGTCGTCTGCCTTCTCCAGCCACTCCGAACCAGGCGCTC
TCTTCGCAAGCCAACCTTGCCGCCGTGAAGCTCCCAGCCGTCGCTGTGGC
CGGCACTCCTGAGGATGCTAGTACCCGAGGTGCGCCGCGTGGCCGCTTGC
GAGACACTTGCCCACAAACCGCCGCACCATTCACGAAGGCAGGGGTAGAC
GAGGCACAGTCTTGCACGGTCGACTCCACATTCTTGCTCCAGAGAACGGC
TACAGCTATCACCAACAGGGAACGCATCGCGGTACTCATCAGTACAACGG
CGGTGGCGTTCTAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig6286:3806..4119+

>mRNA_L-elsbetiae_contig6286.14909.1 ID=mRNA_L-elsbetiae_contig6286.14909.1|Name=mRNA_L-elsbetiae_contig6286.14909.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=618bp|location=Sequence derived from alignment at L-elsbetiae_contig6286:3806..4119+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCTTCGTCGTCTGCCTTCTCCAGCCACTCCGAACCAGGCGCTCTCTTC
GCAAGCCAACCTTGCCGCCGTGAAGCTCCCAGCCGTCGCTGTGGCCGGCA
CTCCTGAGGATGCTAGTACCCGAGGTGCGCCGCGTGGCCGCTTGCGAGAC
ACTTGCCCACAAACCGCCGCACCATTCACGAAGGCAGGGGTAGACGAGGC
ACAGTCTTGCACGGTCGACTCCACATTCTTGCTCCAGAGAACGGCTACAG
CTATCACCAACAGGGAACGCATCGCGGTACTCATCAGTACAACGGCGGTG
GCGTTCTAGATGCTTCGTCGTCTGCCTTCTCCAGCCACTCCGAACCAGGC
GCTCTCTTCGCAAGCCAACCTTGCCGCCGTGAAGCTCCCAGCCGTCGCTG
TGGCCGGCACTCCTGAGGATGCTAGTACCCGAGGTGCGCCGCGTGGCCGC
TTGCGAGACACTTGCCCACAAACCGCCGCACCATTCACGAAGGCAGGGGT
AGACGAGGCACAGTCTTGCACGGTCGACTCCACATTCTTGCTCCAGAGAA
CGGCTACAGCTATCACCAACAGGGAACGCATCGCGGTACTCATCAGTACA
ACGGCGGTGGCGTTCTAG
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