mRNA_L-elsbetiae_contig6283.14904.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6283.14904.1
Unique NamemRNA_L-elsbetiae_contig6283.14904.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig6283.14904.1 vs. uniprot
Match: D8LPX1_ECTSI (Alpha/beta hydrolase fold n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LPX1_ECTSI)

HSP 1 Score: 96.3 bits (238), Expect = 7.280e-21
Identity = 59/121 (48.76%), Postives = 70/121 (57.85%), Query Frame = 1 
Query:   46 KILTELGDRAREPGIMGRAVTCVPFHAVSCQQRVDIRRRLGKIVYARNCIKIVAPKPLA*RS*RRPPQQSVV*--------RCGDSS---------LEDHQDYYRNTQSGQFFRDVRVPFL 357
            K L ELGDRAR+ GIMG AVTCVPF AVSCQQRVD     GKIVYA+N +  + PK +  +S   P    V+           G+            + +QDYYR TQSGQF + VRVPFL
Sbjct:  279 KFLGELGDRARDMGIMGGAVTCVPFDAVSCQQRVDTG--FGKIVYAKNFLNSLIPKMMR-KSLTDPRVAEVIDLKRLQRITTIGEFDDMVIAPVFGFDGYQDYYRKTQSGQFLKGVRVPFL 396
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6283.14904.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LPX1_ECTSI7.280e-2148.76Alpha/beta hydrolase fold n=2 Tax=Ectocarpus TaxID... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6283contigL-elsbetiae_contig6283:8048..10054 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons4
Model size368
Cds size135
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6283.14904.1prot_L-elsbetiae_contig6283.14904.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6283 8683..9258 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816691.3366423-UTR-L-elsbetiae_contig6283:8047..81601622816691.3366423-UTR-L-elsbetiae_contig6283:8047..8160Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6283 8048..8160 -
1691683743.4632812-UTR-L-elsbetiae_contig6283:8047..81601691683743.4632812-UTR-L-elsbetiae_contig6283:8047..8160Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6283 8048..8160 -
1622816691.3493073-UTR-L-elsbetiae_contig6283:8652..86821622816691.3493073-UTR-L-elsbetiae_contig6283:8652..8682Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6283 8653..8682 -
1691683743.482868-UTR-L-elsbetiae_contig6283:8652..86821691683743.482868-UTR-L-elsbetiae_contig6283:8652..8682Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6283 8653..8682 -
1622816691.3820636-UTR-L-elsbetiae_contig6283:9258..93001622816691.3820636-UTR-L-elsbetiae_contig6283:9258..9300Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6283 9259..9300 -
1691683743.5246098-UTR-L-elsbetiae_contig6283:9258..93001691683743.5246098-UTR-L-elsbetiae_contig6283:9258..9300Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6283 9259..9300 -
1622816691.3925643-UTR-L-elsbetiae_contig6283:10006..100541622816691.3925643-UTR-L-elsbetiae_contig6283:10006..10054Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6283 10007..10054 -
1691683743.5341432-UTR-L-elsbetiae_contig6283:10006..100541691683743.5341432-UTR-L-elsbetiae_contig6283:10006..10054Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6283 10007..10054 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816691.3601325-CDS-L-elsbetiae_contig6283:8682..87661622816691.3601325-CDS-L-elsbetiae_contig6283:8682..8766Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6283 8683..8766 -
1691683743.502202-CDS-L-elsbetiae_contig6283:8682..87661691683743.502202-CDS-L-elsbetiae_contig6283:8682..8766Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6283 8683..8766 -
1622816691.3713303-CDS-L-elsbetiae_contig6283:9207..92581622816691.3713303-CDS-L-elsbetiae_contig6283:9207..9258Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6283 9208..9258 -
1691683743.5152133-CDS-L-elsbetiae_contig6283:9207..92581691683743.5152133-CDS-L-elsbetiae_contig6283:9207..9258Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6283 9208..9258 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6283.14904.1

>prot_L-elsbetiae_contig6283.14904.1 ID=prot_L-elsbetiae_contig6283.14904.1|Name=mRNA_L-elsbetiae_contig6283.14904.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=45bp
MGRAVTCVPFHAVSCQQRVDIRRRLGKIVYARNCIKIVAPKPLA*
back to top

mRNA from alignment at L-elsbetiae_contig6283:8048..10054-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6283.14904.1 ID=mRNA_L-elsbetiae_contig6283.14904.1|Name=mRNA_L-elsbetiae_contig6283.14904.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2007bp|location=Sequence derived from alignment at L-elsbetiae_contig6283:8048..10054- (Laminarionema elsbetiae ELsaHSoW15)
AGGTGAAATTTGGCCCTGGTGCCATAATATGCGAGCGACCCAGTCAAGGT
GTGAGTTTCGTGACAAACCATGCATTTGGTATTGGGAGTCACGGGCATTG
TTGCCGGCATCAACCCGCAGCATCGCATGAACACGAGTGCTGACGGTGAT
GGCTTGGGCACAGATAGCGGCAGGGTTCGTGGTGTATTGTAAATCTCCGC
TGTGGTTGGCGTTGTGCCTGGAGACAGTGCGGTATTCGGCCTTTATCGTT
TCCCGGCTGTTTGTTTTCATTTTCTCCGGCATCGGTGGCAGCAATATGGC
CTGTTTTTGCTATCTGCCGACATGGGCGTTCTTTGTCGAAAAGAAAGGGG
CGTTATTTTGTTTGGTCGGACGAGAATAAGAGGGTGGCTGTCCTGATTTG
ATCGTCGTGCAAAAGAGGGCGTGAGGCAGCAACGTGGTGCTGGACTGGCA
TTCGGGTGATGACGTTCGTTTCATGTATAATATGCATGCCGTTTTTGCTG
TATGCACCGGATGGAGGGTTGGTGTTGGGATTAAGCTCAAGAGGGGAAAA
GGATGTGCTTACGAGGTAAACGCAAGACAAGTCGTTTCCATTGATGGGTA
CAAGAGGGGACCATGGGTAGTTTATTTCTTATTTCAAGGGCGTGCGGGAA
AAACCGTTCTTAGCTGTCTTATACCCTGGCGTGGCTGGTTGTTGTTCGCT
TGTTCGGTTTTGTGTAGATATGTTTTGTGATCGTTGCTTCGCCCGTTCCC
CAAGATCTTGACGGAGCTGGGCGATCGTGCGAGGGAACCGGGAATCATGG
GCAGGGCCGTTACCTGCGTCCCGTTCCACGCTGTTTCTTGCCAACAGGTG
AGGGCTATTCGCGAGGATGAGTCGTCGCTGTTGCTCGTTGCTGCTGCTGT
TGTGGTGATTCTCATTGTTGCTGATGTTGCTGTTGCTATTGCTGTTGGTG
TTGGTGTTGTTGTCATTGTTTGTTGTTGTCGTGTACAGTACACCCCAAAA
GCGATTCGACAGTCACCCGCTAACGTCTGTCCGCGATTCTGTCGTGGCCG
TGTTCTTTATTTTTGTTTCTTGCATGTTTGGCATTATCGGGGAGTTTTGT
TCCACGCCACGCCTGCCTGATTCTCAATCCCGTCTTGTTTTTACTTCTAT
GTATGTTTGTTTGCGTTTCTCTCTGCTTTCCCTGCAAAACCTCGTCAGCA
GTCCGCATCCAAGCGTTCTGATCATGTTCGTCCTATGCTGTTTGCTCCCT
CCATCCCCACCCCGCATCCGCTACACCCCTCGCGCCAGCGAGTAGACATA
CGTAGGCGACTCGGCAAGATTGTCTACGCGAGGAATTGTATCAAGATCGT
GGCCCCCAAGCCCTTGGCCTAGAGAAGCTAAAGAAGGCCACCACAGCAGT
CGGTAAGGATTTGTGGATGACCAAGCTAAGTTTGCTCTATCGTACCGATG
TTAGTGCATAGAAATGCTGCAAGTGTGTGGGTACCAGCGACGGAAGATAG
CATACCCACCCTAACCCTCAACCTTGAGAGCGCCTCCCACCACCCCCCCC
CATGGTGTCCAACTGGACGATATCACGACGGGAGAAGGGAGATGCAGGCG
AACGTTACGTGTGTAGAAGGCCAACGATCTAGTGTTTTCCACCATGATGT
GTCGAGTATCTTCATCCTCCCCTTTGGGAGAAATGGACCGGTCAGCTCGA
CTGCCCAACACCTTGGGCATGTTCACATTGTGGTTTAATGGTGCGCTTCC
CCACGTCTGGACCCCGACCGGTCTCTCTCTCTCTCTCTCTCGCTGCCTCT
CTGTGTCTCCCTCGTTCTCTGTCTCGCTCTTTCGCTACGTTTTTTTCTTG
TGGTCTGGCTGTTTTGATGTACTGGGAACAAATGACACAAACAGGTGGTT
TGACGATGTGGTGATAGCTCCCTCGAAGACCATCAGGACTACTACCGAAA
TACGCAGTCCGGACAGTTCTTCAGGGACGTACGAGTTCCCTTCTTGGGCG
ATGCAGG
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig6283:8048..10054-

>mRNA_L-elsbetiae_contig6283.14904.1 ID=mRNA_L-elsbetiae_contig6283.14904.1|Name=mRNA_L-elsbetiae_contig6283.14904.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=270bp|location=Sequence derived from alignment at L-elsbetiae_contig6283:8048..10054- (Laminarionema elsbetiae ELsaHSoW15)
ATGGGCAGGGCCGTTACCTGCGTCCCGTTCCACGCTGTTTCTTGCCAACA
GATGGGCAGGGCCGTTACCTGCGTCCCGTTCCACGCTGTTTCTTGCCAAC
AGCGAGTAGACATACGTAGGCGACTCGGCAAGATTGTCTACGCGAGGAAT
TGTATCAAGATCGTGGCCCCCAAGCCCTTGGCCTAGCGAGTAGACATACG
TAGGCGACTCGGCAAGATTGTCTACGCGAGGAATTGTATCAAGATCGTGG
CCCCCAAGCCCTTGGCCTAG
back to top