mRNA_L-elsbetiae_contig6283.14903.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6283.14903.1
Unique NamemRNA_L-elsbetiae_contig6283.14903.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6283.14903.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6283contigL-elsbetiae_contig6283:4748..8120 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size166
Cds size165
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816691.2898135-CDS-L-elsbetiae_contig6283:4748..48411622816691.2898135-CDS-L-elsbetiae_contig6283:4748..4841Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6283 4749..4841 -
1691683743.440915-CDS-L-elsbetiae_contig6283:4748..48411691683743.440915-CDS-L-elsbetiae_contig6283:4748..4841Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6283 4749..4841 -
1622816691.3038704-CDS-L-elsbetiae_contig6283:8048..81201622816691.3038704-CDS-L-elsbetiae_contig6283:8048..8120Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6283 8049..8120 -
1691683743.4522285-CDS-L-elsbetiae_contig6283:8048..81201691683743.4522285-CDS-L-elsbetiae_contig6283:8048..8120Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6283 8049..8120 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6283.14903.1prot_L-elsbetiae_contig6283.14903.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6283 4749..8120 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6283.14903.1

>prot_L-elsbetiae_contig6283.14903.1 ID=prot_L-elsbetiae_contig6283.14903.1|Name=mRNA_L-elsbetiae_contig6283.14903.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=55bp
RTTTEIRSPDSSSGTYEFPSWAMQAIDDPFMDLAQLPTLHTTWKATPPGH
CILQR
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mRNA from alignment at L-elsbetiae_contig6283:4748..8120-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6283.14903.1 ID=mRNA_L-elsbetiae_contig6283.14903.1|Name=mRNA_L-elsbetiae_contig6283.14903.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3373bp|location=Sequence derived from alignment at L-elsbetiae_contig6283:4748..8120- (Laminarionema elsbetiae ELsaHSoW15)
AGGACTACTACCGAAATACGCAGTCCGGACAGTTCTTCAGGGACGTACGA
GTTCCCTTCTTGGGCGATGCAGGTGTGTTCTTCGACCAAGCCGACAGTTT
TGCAAGAAAAACAGTCAAGCCTAAAAATGGAACCTAACTCACATTGAGAC
GGGGCTCCGTGAGATTGGATCGATATTCCATATACATAGTGACGTAGTAT
TGGGCCGGCCGAGTAGAAAAACACCTTAAATATAGGAAGAATTAACTCAG
GTCAAACAACATGTATTTTGGGGAGAAACCCTCCGTGATGTCGTGATGTT
GCCAACTACTTTTATGATAGGATCACGAGGCATTATTTGACTTAATAAAA
GTCAAGATGCTAGAGTATATGCGGGATTGCTGCTATGAACGAGAACGGGT
ACAAAAGACACTTCTCTGTCCCATAAGTCTATATCGTGGTTATGTTTGTA
CGGGCCCTTAACCGTGTACGATCTGTTTTGGACTGTTTTGTTGAAATATT
TGGTGTTTTTTTAGTAAAAAGCAGTTTGTTTTTTTCCAACTGGTGCTTGA
ACCATGCGGCCGAACGGCCGAAAACAAATCAGTCGGCCCAAAAATGGCGG
TATTTCGCCCCTTTTCCCAGCAAACGTAAAAGACCTATGGTCTGTGCACA
ATGATTCGTCCAATCACGTTTCCTGTCGTGACTTTGCAATAGGCCGACTC
AGCCGGAGTTTCAGCCATCCTAGTGTTCCTCAGACCAAGGGGAAAAAGAT
GGGCTCGAGAAAAAAAAAATGATAGCAGTACTTTAATTCCAAGTTGTTTA
GGAGGCACGCGCCGGAAAATAACAGACAGGAAGAAAAAGACCAAACAAAC
GGCATGTTGGACAAAAAATTGACATCTCGACAAGCAGATTTACTCGGTAA
AACAAAAAATACCCCTCTGGAGGTTGACGAGGGGGATCGTTGGCCGCTCT
TTCTTATTAAATCGGTTGGTCAGTTTTCCATACAAATCAAAACAAGTTGG
CCTTCTTTAAAGGTTACAGTTTTTTCCCGATTTCTCGACAACTAGATTTT
CCTCCGAAAAAAGCAAACTACCCCTCTGGGGATCGAACTCAGGAATCGAA
TGCCGACATCTTTTTTTCCAATCGGCTGGTGAGTTTTTGCACATAAAACA
AAACGAAAATTTCGTCTTGTTTTTTCTCTGATAAAAAGTCAAGGGATAGG
TACCAAAATAAAAAACACTTTGCGCCACGTCATGCGCCTGGAGACGGGGC
GTTTGCAGATACTTTAGGATTTCAGAACGACCACGTGTGTGCAGAGAAAA
GTTGTCATCTGTAACGGTTAGGCCACTTAGGCACACTGGTAAAAAGATTT
TCGTCATGTTCTTGCTGCTGCCGACGCAAAAATGTCCAAAATCGGTCAAT
ACTGGGTTTATATGGCCGATGTTTATAGGCAAAAAACCTTGAAAAAATAA
ATCTTGTTGTATTTTGACCTTTGTGGCCACTTTTCCTCGCCAAGAGCTCG
GAATCAGAATTTCGCTTCTCAGCGACTTTCAAAGCTCTCCTCCAGAGGTT
TACGGATCGGCTGTTTAATCTGGCACACTCCGGGTTTGGTTGTTGGCCTC
GGAGTAAGATTTTGCTGGATCCGGCCAAGACCTGGCCAAAAAGTCGTGTT
CGCGCAAATATTCAGCCAAAATGTGAAAAATTTGTAAATCTTGGCCAAAT
CTAGCAAAATCTTCCTCCGAGGTCAACAATCAAACCCGGAGTGTGCCAGA
TTGGAGAGCTGATCCGTAAACCTCTGGAGGAGAACTTTGAAAGTCCCTGA
GAAGCGAAAATCTGATTCCGAGCTCGTGGCGAAGAAATGTGGCCACAAAG
GTCAAAGTACACCAAGATTTTTATTTTCAAGATTTTTTTCCTATAAACAT
GGGTGGGAAAATCGCAAATTGAGGCATATTTTGACATTATTCTAGTATTG
GAAAACCAACTCGTTGTTCTTTTTTCTTCATCAGCTTCCTCTTTGCTTTG
TCTTTCAGACGAAATCAACTATAGGATAATCATAAACCGCGATATATCGA
ACCCATCAAACGCCCATAACCACGCGGACTTATGGGACAGAGGAACTATG
TACATTCCAGTACAAACATCAGGAAAACAAAATGAAGCCTATTCTATTGC
GAAATACTTAAACGAAGTATGATGTTATCTACTTACACCGGTTTTTATAG
GAGCGAAAAGTTGAGAGAAAAGTTCAATTTTTTTCCCAACTTGATGTCGA
GACTTTTGGTCAGTGAAGCTATGCACACTCTTTAAGAGGCGAACAAAAGT
TTGTTTACGGGACTGGTGGAATGTGGAGGCGTGATCCTTGATTTTTTATT
GAGCAACGGCGAGATGCAAGCACACCTCTTCAAACACACGGTGAATACGG
CCACAGCGTCTCACGAAAGCATTGAAATCGAGTTGGTCGTATCAAATCTG
GCGCTTATGCCTTTCAATCAAATTAGGAAGTGCTCTTGTTTGGCGAAAAA
CTGGTGGTACAGTCTCTATATATCCGTGTAGTCTAATGTACACAGCTGCA
GGCATCGCAGGCAATTCCAACTCGTCGTTCAAGTGATCTGAGCCGGCTAT
TCTGTTGATATGTCGCGCGGATCGGGTGTGTGTGTGTGCGTGGCGGTAGA
GAGAGTTTACTTGTGTGGTGGAGTCGGCGCTTGGTGTGGATTGGCTGAAG
TCCCGCCGCTCAACTTTTCTTCGCCACATTTTCTCGTCAAACGTTTGCAC
TTTTTGCTCGCGACCGGGCAAAAGTTTGGCAAACCAAAAGTTCGGCAACT
TTTATCGCCATTTTCTGCTCCCATAGAGAGCGTACATGAGAAAGTTGGAA
AGAAAAGTTCAGAAACTTTTACTTTTCTCTCAACTTTTCGCTCCCATAAA
AACCGGTGTTCAAATTTCTACAATATTTCGGGGCGTGTACGTATCGACAT
CTTTTGCGGTCTCGCCGCGTTGCCAGAAGGGGGGGTGAGTGGGCGGGTGG
AATGGTTGGCGGGTGTGTGTGCGCATACCGACTGCCATTAATAGGAGAAG
GAGGTAGGCAAACCAATCTCTAGATCGGCAGCGATATCGACATTTAACGC
GAGAGCATACCATCCCATCTCGCCAGCACGATCTACCCAAACCCTATCTA
TCCCGCCGCCTATGGCCCTTCACTGCCTCGCCTCACTGTCTAGGTTTCCC
TGTATCGCCGCGGCCACACTCGGATCCGACCCGACCCGGAACTTAGTCTG
GTACTGCCCATGCCGATAATACCTTGCAGGCGATCGACGATCCTTTCATG
GACCTGGCACAGCTGCCTACGTTGCACACGACTTGGAAGGCGACCCCGCC
AGGCCATTGTATCTTACAACGAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig6283:4748..8120-

>mRNA_L-elsbetiae_contig6283.14903.1 ID=mRNA_L-elsbetiae_contig6283.14903.1|Name=mRNA_L-elsbetiae_contig6283.14903.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=330bp|location=Sequence derived from alignment at L-elsbetiae_contig6283:4748..8120- (Laminarionema elsbetiae ELsaHSoW15)
AGGACTACTACCGAAATACGCAGTCCGGACAGTTCTTCAGGGACGTACGA
GTTCCCTTCTTGGGCGATGCAGAGGACTACTACCGAAATACGCAGTCCGG
ACAGTTCTTCAGGGACGTACGAGTTCCCTTCTTGGGCGATGCAGGCGATC
GACGATCCTTTCATGGACCTGGCACAGCTGCCTACGTTGCACACGACTTG
GAAGGCGACCCCGCCAGGCCATTGTATCTTACAACGAGCGATCGACGATC
CTTTCATGGACCTGGCACAGCTGCCTACGTTGCACACGACTTGGAAGGCG
ACCCCGCCAGGCCATTGTATCTTACAACGA
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