mRNA_L-elsbetiae_contig6282.14901.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6282.14901.1
Unique NamemRNA_L-elsbetiae_contig6282.14901.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6282.14901.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6282contigL-elsbetiae_contig6282:4563..4937 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size375
Cds size324
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6282.14901.1prot_L-elsbetiae_contig6282.14901.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6282 4594..4917 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816691.1383593-UTR-L-elsbetiae_contig6282:4562..45931622816691.1383593-UTR-L-elsbetiae_contig6282:4562..4593Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6282 4563..4593 +
1691683743.342938-UTR-L-elsbetiae_contig6282:4562..45931691683743.342938-UTR-L-elsbetiae_contig6282:4562..4593Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6282 4563..4593 +
1622816691.158659-UTR-L-elsbetiae_contig6282:4917..49371622816691.158659-UTR-L-elsbetiae_contig6282:4917..4937Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6282 4918..4937 +
1691683743.3633063-UTR-L-elsbetiae_contig6282:4917..49371691683743.3633063-UTR-L-elsbetiae_contig6282:4917..4937Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6282 4918..4937 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816691.148805-CDS-L-elsbetiae_contig6282:4593..49171622816691.148805-CDS-L-elsbetiae_contig6282:4593..4917Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6282 4594..4917 +
1691683743.3543942-CDS-L-elsbetiae_contig6282:4593..49171691683743.3543942-CDS-L-elsbetiae_contig6282:4593..4917Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6282 4594..4917 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6282.14901.1

>prot_L-elsbetiae_contig6282.14901.1 ID=prot_L-elsbetiae_contig6282.14901.1|Name=mRNA_L-elsbetiae_contig6282.14901.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=108bp
MQLYWKFTGSFWLLWCVLSWSHKFENQLFPRRGANLSRRATAQALMTGLI
WLCLKPLVVAIRARIEWPQNVSKIRITMQTQDRQIYTNIGQNRKPPCLSS
FFAHTHP*
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mRNA from alignment at L-elsbetiae_contig6282:4563..4937+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6282.14901.1 ID=mRNA_L-elsbetiae_contig6282.14901.1|Name=mRNA_L-elsbetiae_contig6282.14901.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=375bp|location=Sequence derived from alignment at L-elsbetiae_contig6282:4563..4937+ (Laminarionema elsbetiae ELsaHSoW15)
AAATGAATCAAAAAGCAGCAATCGGTCTTGCATGCAGCTTTACTGGAAGT
TTACTGGAAGCTTTTGGTTGCTTTGGTGCGTGCTGAGCTGGTCGCACAAG
TTCGAAAACCAACTATTTCCACGTCGCGGCGCGAACTTGTCGCGGCGTGC
GACAGCACAAGCTCTAATGACAGGGCTTATTTGGCTTTGTTTGAAGCCCT
TGGTGGTTGCGATCCGTGCCAGAATAGAATGGCCGCAAAATGTGTCAAAA
ATACGGATTACGATGCAGACACAAGATAGACAGATATACACCAACATCGG
GCAAAACAGGAAGCCACCCTGTTTATCTTCTTTTTTCGCTCACACGCACC
CCTAATGTACAGTATCATGGCCCAC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig6282:4563..4937+

>mRNA_L-elsbetiae_contig6282.14901.1 ID=mRNA_L-elsbetiae_contig6282.14901.1|Name=mRNA_L-elsbetiae_contig6282.14901.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=648bp|location=Sequence derived from alignment at L-elsbetiae_contig6282:4563..4937+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCAGCTTTACTGGAAGTTTACTGGAAGCTTTTGGTTGCTTTGGTGCGT
GCTGAGCTGGTCGCACAAGTTCGAAAACCAACTATTTCCACGTCGCGGCG
CGAACTTGTCGCGGCGTGCGACAGCACAAGCTCTAATGACAGGGCTTATT
TGGCTTTGTTTGAAGCCCTTGGTGGTTGCGATCCGTGCCAGAATAGAATG
GCCGCAAAATGTGTCAAAAATACGGATTACGATGCAGACACAAGATAGAC
AGATATACACCAACATCGGGCAAAACAGGAAGCCACCCTGTTTATCTTCT
TTTTTCGCTCACACGCACCCCTAAATGCAGCTTTACTGGAAGTTTACTGG
AAGCTTTTGGTTGCTTTGGTGCGTGCTGAGCTGGTCGCACAAGTTCGAAA
ACCAACTATTTCCACGTCGCGGCGCGAACTTGTCGCGGCGTGCGACAGCA
CAAGCTCTAATGACAGGGCTTATTTGGCTTTGTTTGAAGCCCTTGGTGGT
TGCGATCCGTGCCAGAATAGAATGGCCGCAAAATGTGTCAAAAATACGGA
TTACGATGCAGACACAAGATAGACAGATATACACCAACATCGGGCAAAAC
AGGAAGCCACCCTGTTTATCTTCTTTTTTCGCTCACACGCACCCCTAA
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