mRNA_L-elsbetiae_contig6278.14894.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6278.14894.1
Unique NamemRNA_L-elsbetiae_contig6278.14894.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig6278.14894.1 vs. uniprot
Match: A0A6H5J6W1_9PHAE (Cathepsin X n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J6W1_9PHAE)

HSP 1 Score: 106 bits (264), Expect = 6.690e-26
Identity = 43/46 (93.48%), Postives = 44/46 (95.65%), Query Frame = 1 
Query:    1 RFWFVRNSWGEYWGEGGWFRIKRGENQLLLESNCAWAVPGSWTELH 138
            +FW VRNSWGEYWGEGGWFRIKRGENQLLLESNC WAVPGSWTELH
Sbjct:  250 KFWIVRNSWGEYWGEGGWFRIKRGENQLLLESNCGWAVPGSWTELH 295
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BLAST of mRNA_L-elsbetiae_contig6278.14894.1 vs. uniprot
Match: D8LCL2_ECTSI (Cathepsin X n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCL2_ECTSI)

HSP 1 Score: 107 bits (267), Expect = 1.310e-25
Identity = 44/51 (86.27%), Postives = 46/51 (90.20%), Query Frame = 1 
Query:    1 RFWFVRNSWGEYWGEGGWFRIKRGENQLLLESNCAWAVPGSWTELHQHDHH 153
            +FW VRNSWGEYWGEGGWFR+KRGENQLLLESNCAWAVPGSWTEL    HH
Sbjct:  230 KFWIVRNSWGEYWGEGGWFRLKRGENQLLLESNCAWAVPGSWTELQPPHHH 280
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BLAST of mRNA_L-elsbetiae_contig6278.14894.1 vs. uniprot
Match: D7FH69_ECTSI (Cathepsin X n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH69_ECTSI)

HSP 1 Score: 105 bits (261), Expect = 1.820e-25
Identity = 42/46 (91.30%), Postives = 44/46 (95.65%), Query Frame = 1 
Query:    1 RFWFVRNSWGEYWGEGGWFRIKRGENQLLLESNCAWAVPGSWTELH 138
            +FW VRNSWGEYWGEGGWFRIKRG+NQLLLESNC WAVPGSWTELH
Sbjct:  260 KFWIVRNSWGEYWGEGGWFRIKRGDNQLLLESNCGWAVPGSWTELH 305
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BLAST of mRNA_L-elsbetiae_contig6278.14894.1 vs. uniprot
Match: A0A835YGR9_9STRA (Cathepsin X n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YGR9_9STRA)

HSP 1 Score: 91.3 bits (225), Expect = 2.550e-20
Identity = 34/45 (75.56%), Postives = 41/45 (91.11%), Query Frame = 1 
Query:    1 RFWFVRNSWGEYWGEGGWFRIKRGENQLLLESNCAWAVPGSWTEL 135
            ++W VRNSWGEYWGE GWFR+ RGENQLL+ESNCAW VPG+WT++
Sbjct:  248 KYWVVRNSWGEYWGEQGWFRLVRGENQLLIESNCAWGVPGAWTDV 292
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BLAST of mRNA_L-elsbetiae_contig6278.14894.1 vs. uniprot
Match: A0A7S2V244_9STRA (Hypothetical protein n=2 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V244_9STRA)

HSP 1 Score: 87.8 bits (216), Expect = 2.360e-19
Identity = 33/45 (73.33%), Postives = 39/45 (86.67%), Query Frame = 1 
Query:    1 RFWFVRNSWGEYWGEGGWFRIKRGENQLLLESNCAWAVPGSWTEL 135
            + W++RNSWGEYWGE GWFR+ RGENQL +ES C WAVPGSWTE+
Sbjct:  248 KIWYIRNSWGEYWGEQGWFRMVRGENQLGIESGCTWAVPGSWTEV 292
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BLAST of mRNA_L-elsbetiae_contig6278.14894.1 vs. uniprot
Match: A0A0L0G2H7_9EUKA (Cathepsin X n=1 Tax=Sphaeroforma arctica JP610 TaxID=667725 RepID=A0A0L0G2H7_9EUKA)

HSP 1 Score: 87.8 bits (216), Expect = 5.140e-19
Identity = 33/44 (75.00%), Postives = 40/44 (90.91%), Query Frame = 1 
Query:    4 FWFVRNSWGEYWGEGGWFRIKRGENQLLLESNCAWAVPGSWTEL 135
            +W VRNSWGEYWGE G+FR+KRGENQL +ES+CAWA PG+WTE+
Sbjct:  291 YWIVRNSWGEYWGEMGYFRVKRGENQLAIESSCAWATPGTWTEM 334
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BLAST of mRNA_L-elsbetiae_contig6278.14894.1 vs. uniprot
Match: A0A7R9U0S8_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U0S8_9STRA)

HSP 1 Score: 85.1 bits (209), Expect = 8.980e-19
Identity = 34/43 (79.07%), Postives = 38/43 (88.37%), Query Frame = 1 
Query:    4 FWFVRNSWGEYWGEGGWFRIKRGENQLLLESNCAWAVPGSWTE 132
            +W VRNSWGEYWGE G+FRIKRGENQL +ES CAWA PG+WTE
Sbjct:  150 YWIVRNSWGEYWGELGFFRIKRGENQLAIESACAWATPGTWTE 192
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BLAST of mRNA_L-elsbetiae_contig6278.14894.1 vs. uniprot
Match: A0A7S4GL91_9EUGL (Hypothetical protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S4GL91_9EUGL)

HSP 1 Score: 80.5 bits (197), Expect = 1.960e-16
Identity = 31/45 (68.89%), Postives = 39/45 (86.67%), Query Frame = 1 
Query:    1 RFWFVRNSWGEYWGEGGWFRIKRGENQLLLESNCAWAVPGSWTEL 135
            ++W VRNSWGEYWGE G+ R+  G+NQL LE++CAWAVPGSWTE+
Sbjct:  267 QYWIVRNSWGEYWGEMGYIRVVMGDNQLGLEADCAWAVPGSWTEV 311
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BLAST of mRNA_L-elsbetiae_contig6278.14894.1 vs. uniprot
Match: A0A7S0RVS0_9CHLO (Hypothetical protein n=1 Tax=Pyramimonas obovata TaxID=1411642 RepID=A0A7S0RVS0_9CHLO)

HSP 1 Score: 78.6 bits (192), Expect = 1.420e-15
Identity = 30/45 (66.67%), Postives = 36/45 (80.00%), Query Frame = 1 
Query:    1 RFWFVRNSWGEYWGEGGWFRIKRGENQLLLESNCAWAVPGSWTEL 135
            +FW VRNSWGEYWGE G+FRI+RG N L +E +CAW  PG WTE+
Sbjct:  305 KFWHVRNSWGEYWGELGFFRIERGRNLLKIEKDCAWVTPGKWTEV 349
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BLAST of mRNA_L-elsbetiae_contig6278.14894.1 vs. uniprot
Match: A0A7S3BVU0_9EUKA (Hypothetical protein n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3BVU0_9EUKA)

HSP 1 Score: 74.7 bits (182), Expect = 3.200e-15
Identity = 28/44 (63.64%), Postives = 36/44 (81.82%), Query Frame = 1 
Query:    4 FWFVRNSWGEYWGEGGWFRIKRGENQLLLESNCAWAVPGSWTEL 135
            +W VRNSWGEYWGE G+ ++ +G+N LL+ESNCAWAVP  WT +
Sbjct:   51 YWEVRNSWGEYWGEMGYAKVAKGKNALLIESNCAWAVPERWTSM 94
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6278.14894.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5J6W1_9PHAE6.690e-2693.48Cathepsin X n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]
D8LCL2_ECTSI1.310e-2586.27Cathepsin X n=1 Tax=Ectocarpus siliculosus TaxID=2... [more]
D7FH69_ECTSI1.820e-2591.30Cathepsin X n=1 Tax=Ectocarpus siliculosus TaxID=2... [more]
A0A835YGR9_9STRA2.550e-2075.56Cathepsin X n=1 Tax=Tribonema minus TaxID=303371 R... [more]
A0A7S2V244_9STRA2.360e-1973.33Hypothetical protein n=2 Tax=Fibrocapsa japonica T... [more]
A0A0L0G2H7_9EUKA5.140e-1975.00Cathepsin X n=1 Tax=Sphaeroforma arctica JP610 Tax... [more]
A0A7R9U0S8_9STRA8.980e-1979.07Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A7S4GL91_9EUGL1.960e-1668.89Hypothetical protein n=1 Tax=Eutreptiella gymnasti... [more]
A0A7S0RVS0_9CHLO1.420e-1566.67Hypothetical protein n=1 Tax=Pyramimonas obovata T... [more]
A0A7S3BVU0_9EUKA3.200e-1563.64Hypothetical protein n=1 Tax=Haptolina ericina Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6278contigL-elsbetiae_contig6278:10682..10879 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score107.5
Seed ortholog evalue2.5e-21
Seed eggNOG ortholog2880.D8LCL2
KEGG koko:K08568
KEGG Pathwayko04142,ko04210,map04142,map04210
Hectar predicted targeting categoryother localisation
EggNOG free text desc.transferase activity, transferring glycosyl groups
EggNOG OGsCOG4870@1,KOG1543@2759
Ec32 ortholog descriptionCathepsin Z-like proteinase
Ec32 orthologEc-13_000990.1
EC3.4.18.1
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01002
Exons1
Model size198
Cds size198
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816690.088992-CDS-L-elsbetiae_contig6278:10681..108791622816690.088992-CDS-L-elsbetiae_contig6278:10681..10879Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6278 10682..10879 -
1691683742.4573717-CDS-L-elsbetiae_contig6278:10681..108791691683742.4573717-CDS-L-elsbetiae_contig6278:10681..10879Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6278 10682..10879 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6278.14894.1prot_L-elsbetiae_contig6278.14894.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6278 10682..10879 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6278.14894.1

>prot_L-elsbetiae_contig6278.14894.1 ID=prot_L-elsbetiae_contig6278.14894.1|Name=mRNA_L-elsbetiae_contig6278.14894.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=66bp
RFWFVRNSWGEYWGEGGWFRIKRGENQLLLESNCAWAVPGSWTELHQHDH
HRGPPPPHHGPPPPPG
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mRNA from alignment at L-elsbetiae_contig6278:10682..10879-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6278.14894.1 ID=mRNA_L-elsbetiae_contig6278.14894.1|Name=mRNA_L-elsbetiae_contig6278.14894.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=198bp|location=Sequence derived from alignment at L-elsbetiae_contig6278:10682..10879- (Laminarionema elsbetiae ELsaHSoW15)
AGGTTCTGGTTCGTCCGCAACTCCTGGGGCGAGTACTGGGGGGAGGGCGG
ATGGTTCCGCATCAAGCGCGGCGAGAACCAGCTCCTGCTCGAGTCCAACT
GCGCCTGGGCGGTGCCCGGGTCCTGGACCGAGCTCCACCAGCACGACCAC
CACCGCGGGCCTCCCCCCCCGCACCACGGGCCCCCGCCTCCCCCGGGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig6278:10682..10879-

>mRNA_L-elsbetiae_contig6278.14894.1 ID=mRNA_L-elsbetiae_contig6278.14894.1|Name=mRNA_L-elsbetiae_contig6278.14894.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=396bp|location=Sequence derived from alignment at L-elsbetiae_contig6278:10682..10879- (Laminarionema elsbetiae ELsaHSoW15)
AGGTTCTGGTTCGTCCGCAACTCCTGGGGCGAGTACTGGGGGGAGGGCGG
ATGGTTCCGCATCAAGCGCGGCGAGAACCAGCTCCTGCTCGAGTCCAACT
GCGCCTGGGCGGTGCCCGGGTCCTGGACCGAGCTCCACCAGCACGACCAC
CACCGCGGGCCTCCCCCCCCGCACCACGGGCCCCCGCCTCCCCCGGGAAG
GTTCTGGTTCGTCCGCAACTCCTGGGGCGAGTACTGGGGGGAGGGCGGAT
GGTTCCGCATCAAGCGCGGCGAGAACCAGCTCCTGCTCGAGTCCAACTGC
GCCTGGGCGGTGCCCGGGTCCTGGACCGAGCTCCACCAGCACGACCACCA
CCGCGGGCCTCCCCCCCCGCACCACGGGCCCCCGCCTCCCCCGGGA
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