mRNA_L-elsbetiae_contig6278.14892.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6278.14892.1
Unique NamemRNA_L-elsbetiae_contig6278.14892.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6278.14892.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6278contigL-elsbetiae_contig6278:614..1312 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size699
Cds size453
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816690.007676-UTR-L-elsbetiae_contig6278:613..8591622816690.007676-UTR-L-elsbetiae_contig6278:613..859Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6278 614..859 +
1691683742.4151988-UTR-L-elsbetiae_contig6278:613..8591691683742.4151988-UTR-L-elsbetiae_contig6278:613..859Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6278 614..859 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816690.019221-CDS-L-elsbetiae_contig6278:859..13121622816690.019221-CDS-L-elsbetiae_contig6278:859..1312Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6278 860..1312 +
1691683742.428378-CDS-L-elsbetiae_contig6278:859..13121691683742.428378-CDS-L-elsbetiae_contig6278:859..1312Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6278 860..1312 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6278.14892.1prot_L-elsbetiae_contig6278.14892.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6278 860..1312 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6278.14892.1

>prot_L-elsbetiae_contig6278.14892.1 ID=prot_L-elsbetiae_contig6278.14892.1|Name=mRNA_L-elsbetiae_contig6278.14892.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=151bp
MHVVRPLCVCIRVYHGGHLRFSLASFVVSGPPPPRAVRAPFASVVDIFTF
AREDQTNFPTGNNLARSRSVAMRRFRSKRCWCGEPFAVAVALQMIIRTGW
RPFTLSPPYPRSICQVSTAVHKLERRRAGWRLHQALLCQNFLSAARCLFV
*
back to top

mRNA from alignment at L-elsbetiae_contig6278:614..1312+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6278.14892.1 ID=mRNA_L-elsbetiae_contig6278.14892.1|Name=mRNA_L-elsbetiae_contig6278.14892.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=699bp|location=Sequence derived from alignment at L-elsbetiae_contig6278:614..1312+ (Laminarionema elsbetiae ELsaHSoW15)
TGTGTGGTCGAGTCGGATCAGGTTGTGCGGGGTGATGACACACCTTAATT
AACTCTGCAGGAGGGTGAAGGACGGTCGCATCGTCGCCCGTGGAGTGTTG
ACACGCTGAGACAAGTGTGGCTGACCTATAGTAGCTGCCTGTGGAAGTGG
CGACACCCGTGACGACGAAGCAACTCGTTCGAGGCAGTGCTCGACGTGCA
GGATACCATCATCATGGTCTATTAGGCCCAAACACTCTCAAGGAAGATGC
ATGTAGTTCGTCCTCTATGTGTGTGTATTCGCGTTTATCACGGAGGTCAT
TTGCGCTTCTCATTGGCTTCCTTTGTTGTCAGTGGCCCCCCACCCCCCCG
CGCGGTGCGCGCGCCTTTTGCTAGTGTTGTTGATATTTTCACGTTCGCTC
GCGAAGACCAGACGAATTTTCCAACCGGAAACAATTTAGCAAGATCACGG
TCCGTGGCCATGCGCAGATTTCGAAGCAAGCGTTGTTGGTGTGGTGAACC
TTTCGCGGTCGCCGTCGCACTGCAGATGATCATTCGGACGGGTTGGCGTC
CCTTCACCCTCTCTCCACCCTACCCCAGATCGATTTGTCAGGTGAGCACG
GCGGTGCACAAGCTGGAACGCAGAAGGGCGGGGTGGCGATTGCATCAAGC
ATTATTATGCCAAAACTTCCTGAGTGCTGCTCGTTGCTTGTTCGTTTAG
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig6278:614..1312+

>mRNA_L-elsbetiae_contig6278.14892.1 ID=mRNA_L-elsbetiae_contig6278.14892.1|Name=mRNA_L-elsbetiae_contig6278.14892.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=906bp|location=Sequence derived from alignment at L-elsbetiae_contig6278:614..1312+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCATGTAGTTCGTCCTCTATGTGTGTGTATTCGCGTTTATCACGGAGG
TCATTTGCGCTTCTCATTGGCTTCCTTTGTTGTCAGTGGCCCCCCACCCC
CCCGCGCGGTGCGCGCGCCTTTTGCTAGTGTTGTTGATATTTTCACGTTC
GCTCGCGAAGACCAGACGAATTTTCCAACCGGAAACAATTTAGCAAGATC
ACGGTCCGTGGCCATGCGCAGATTTCGAAGCAAGCGTTGTTGGTGTGGTG
AACCTTTCGCGGTCGCCGTCGCACTGCAGATGATCATTCGGACGGGTTGG
CGTCCCTTCACCCTCTCTCCACCCTACCCCAGATCGATTTGTCAGGTGAG
CACGGCGGTGCACAAGCTGGAACGCAGAAGGGCGGGGTGGCGATTGCATC
AAGCATTATTATGCCAAAACTTCCTGAGTGCTGCTCGTTGCTTGTTCGTT
TAGATGCATGTAGTTCGTCCTCTATGTGTGTGTATTCGCGTTTATCACGG
AGGTCATTTGCGCTTCTCATTGGCTTCCTTTGTTGTCAGTGGCCCCCCAC
CCCCCCGCGCGGTGCGCGCGCCTTTTGCTAGTGTTGTTGATATTTTCACG
TTCGCTCGCGAAGACCAGACGAATTTTCCAACCGGAAACAATTTAGCAAG
ATCACGGTCCGTGGCCATGCGCAGATTTCGAAGCAAGCGTTGTTGGTGTG
GTGAACCTTTCGCGGTCGCCGTCGCACTGCAGATGATCATTCGGACGGGT
TGGCGTCCCTTCACCCTCTCTCCACCCTACCCCAGATCGATTTGTCAGGT
GAGCACGGCGGTGCACAAGCTGGAACGCAGAAGGGCGGGGTGGCGATTGC
ATCAAGCATTATTATGCCAAAACTTCCTGAGTGCTGCTCGTTGCTTGTTC
GTTTAG
back to top