mRNA_L-elsbetiae_contig6273.14886.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6273.14886.1
Unique NamemRNA_L-elsbetiae_contig6273.14886.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6273.14886.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6273contigL-elsbetiae_contig6273:4513..4850 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size338
Cds size315
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816689.263222-CDS-L-elsbetiae_contig6273:4512..48271622816689.263222-CDS-L-elsbetiae_contig6273:4512..4827Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6273 4513..4827 +
1691683741.8456998-CDS-L-elsbetiae_contig6273:4512..48271691683741.8456998-CDS-L-elsbetiae_contig6273:4512..4827Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6273 4513..4827 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816689.2736957-UTR-L-elsbetiae_contig6273:4827..48501622816689.2736957-UTR-L-elsbetiae_contig6273:4827..4850Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6273 4828..4850 +
1691683741.857195-UTR-L-elsbetiae_contig6273:4827..48501691683741.857195-UTR-L-elsbetiae_contig6273:4827..4850Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6273 4828..4850 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6273.14886.1prot_L-elsbetiae_contig6273.14886.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6273 4513..4827 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6273.14886.1

>prot_L-elsbetiae_contig6273.14886.1 ID=prot_L-elsbetiae_contig6273.14886.1|Name=mRNA_L-elsbetiae_contig6273.14886.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=105bp
APTNATLFLFAARYSSCVPNAAYALKPIPPSNPFPLNNEAYLKDWPICLS
SNVFAVSCTPSRSGGKRETSAGNTRSNETHTDLSEETPRSKKAPDRQTRK
ARKV*
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mRNA from alignment at L-elsbetiae_contig6273:4513..4850+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6273.14886.1 ID=mRNA_L-elsbetiae_contig6273.14886.1|Name=mRNA_L-elsbetiae_contig6273.14886.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=338bp|location=Sequence derived from alignment at L-elsbetiae_contig6273:4513..4850+ (Laminarionema elsbetiae ELsaHSoW15)
GCCCCGACCAACGCAACCTTATTTTTGTTTGCCGCTAGGTACAGCTCATG
TGTGCCGAATGCTGCATATGCCCTGAAGCCAATCCCCCCGTCCAACCCTT
TCCCTCTCAACAACGAGGCTTACCTCAAGGACTGGCCGATCTGCTTATCT
TCGAACGTATTCGCAGTCTCCTGCACACCATCAAGAAGCGGAGGAAAGAG
AGAGACAAGCGCAGGCAATACCCGAAGCAATGAGACACACACTGACTTGT
CAGAGGAAACACCGCGCAGTAAAAAAGCACCCGATCGGCAGACGCGCAAG
GCCAGAAAAGTATGATGTACAAGCACACAACACTGCAC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig6273:4513..4850+

>mRNA_L-elsbetiae_contig6273.14886.1 ID=mRNA_L-elsbetiae_contig6273.14886.1|Name=mRNA_L-elsbetiae_contig6273.14886.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=630bp|location=Sequence derived from alignment at L-elsbetiae_contig6273:4513..4850+ (Laminarionema elsbetiae ELsaHSoW15)
GCCCCGACCAACGCAACCTTATTTTTGTTTGCCGCTAGGTACAGCTCATG
TGTGCCGAATGCTGCATATGCCCTGAAGCCAATCCCCCCGTCCAACCCTT
TCCCTCTCAACAACGAGGCTTACCTCAAGGACTGGCCGATCTGCTTATCT
TCGAACGTATTCGCAGTCTCCTGCACACCATCAAGAAGCGGAGGAAAGAG
AGAGACAAGCGCAGGCAATACCCGAAGCAATGAGACACACACTGACTTGT
CAGAGGAAACACCGCGCAGTAAAAAAGCACCCGATCGGCAGACGCGCAAG
GCCAGAAAAGTATGAGCCCCGACCAACGCAACCTTATTTTTGTTTGCCGC
TAGGTACAGCTCATGTGTGCCGAATGCTGCATATGCCCTGAAGCCAATCC
CCCCGTCCAACCCTTTCCCTCTCAACAACGAGGCTTACCTCAAGGACTGG
CCGATCTGCTTATCTTCGAACGTATTCGCAGTCTCCTGCACACCATCAAG
AAGCGGAGGAAAGAGAGAGACAAGCGCAGGCAATACCCGAAGCAATGAGA
CACACACTGACTTGTCAGAGGAAACACCGCGCAGTAAAAAAGCACCCGAT
CGGCAGACGCGCAAGGCCAGAAAAGTATGA
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