mRNA_L-elsbetiae_contig6269.14882.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6269.14882.1
Unique NamemRNA_L-elsbetiae_contig6269.14882.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6269.14882.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6269contigL-elsbetiae_contig6269:3524..3986 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size465
Cds size348
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816688.8719535-CDS-L-elsbetiae_contig6269:3523..38711622816688.8719535-CDS-L-elsbetiae_contig6269:3523..3871Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6269 3524..3871 +
1691683741.5112224-CDS-L-elsbetiae_contig6269:3523..38711691683741.5112224-CDS-L-elsbetiae_contig6269:3523..3871Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6269 3524..3871 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816688.8835394-UTR-L-elsbetiae_contig6269:3871..39861622816688.8835394-UTR-L-elsbetiae_contig6269:3871..3986Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6269 3872..3986 +
1691683741.5235226-UTR-L-elsbetiae_contig6269:3871..39861691683741.5235226-UTR-L-elsbetiae_contig6269:3871..3986Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6269 3872..3986 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6269.14882.1prot_L-elsbetiae_contig6269.14882.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6269 3524..3871 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6269.14882.1

>prot_L-elsbetiae_contig6269.14882.1 ID=prot_L-elsbetiae_contig6269.14882.1|Name=mRNA_L-elsbetiae_contig6269.14882.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=116bp
STPQGVVHVSTWGDCRQNKWEGHTHTWVWRCLGFHRRDIPKKTKKLAGLS
AAEKWSPQQGLLYPCCGRSCGRILSLVLRASVVRRRAQSCVWHETKKRPA
GSTWFTTTTTLLPPK*
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mRNA from alignment at L-elsbetiae_contig6269:3524..3986+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6269.14882.1 ID=mRNA_L-elsbetiae_contig6269.14882.1|Name=mRNA_L-elsbetiae_contig6269.14882.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=463bp|location=Sequence derived from alignment at L-elsbetiae_contig6269:3524..3986+ (Laminarionema elsbetiae ELsaHSoW15)
AGTACACCGCAAGGTGTAGTACACGTCTCCACTTGGGGGGACTGTCGCCA
AAATAAATGGGAAGGACACACACACACATGGGTCTGGCGGTGCTTGGGAT
TTCACAGGCGCGACATCCCCAAAAAAACGAAGAAGTTGGCGGGCCTCTCT
GCTGCTGAAAAGTGGTCACCACAGCAGGGGCTGCTCTACCCCTGCTGTGG
GAGGAGCTGTGGGAGGATCTTGTCTCTGGTCTTGCGTGCGTCTGTCGTGC
GCCGTCGTGCGCAGTCGTGCGTGTGGCATGAAACAAAAAAAAGGCCGGCT
GGTTCTACCTGGTTCACAACAACAACAACGCTGCTACCTCCAAAATAGAG
ACAACACGACTCTCAACAGCTGAACCGCGCTTCGATTTGCAAAATGAAAG
GCCTCGCAAGCTTTCTAAAAAAAATGGGGAGGTCGTGCACTTTTCCGCAC
TTGAATCGGTGCC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig6269:3524..3986+

>mRNA_L-elsbetiae_contig6269.14882.1 ID=mRNA_L-elsbetiae_contig6269.14882.1|Name=mRNA_L-elsbetiae_contig6269.14882.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=696bp|location=Sequence derived from alignment at L-elsbetiae_contig6269:3524..3986+ (Laminarionema elsbetiae ELsaHSoW15)
AGTACACCGCAAGGTGTAGTACACGTCTCCACTTGGGGGGACTGTCGCCA
AAATAAATGGGAAGGACACACACACACATGGGTCTGGCGGTGCTTGGGAT
TTCACAGGCGCGACATCCCCAAAAAAACGAAGAAGTTGGCGGGCCTCTCT
GCTGCTGAAAAGTGGTCACCACAGCAGGGGCTGCTCTACCCCTGCTGTGG
GAGGAGCTGTGGGAGGATCTTGTCTCTGGTCTTGCGTGCGTCTGTCGTGC
GCCGTCGTGCGCAGTCGTGCGTGTGGCATGAAACAAAAAAAAGGCCGGCT
GGTTCTACCTGGTTCACAACAACAACAACGCTGCTACCTCCAAAATAGAG
TACACCGCAAGGTGTAGTACACGTCTCCACTTGGGGGGACTGTCGCCAAA
ATAAATGGGAAGGACACACACACACATGGGTCTGGCGGTGCTTGGGATTT
CACAGGCGCGACATCCCCAAAAAAACGAAGAAGTTGGCGGGCCTCTCTGC
TGCTGAAAAGTGGTCACCACAGCAGGGGCTGCTCTACCCCTGCTGTGGGA
GGAGCTGTGGGAGGATCTTGTCTCTGGTCTTGCGTGCGTCTGTCGTGCGC
CGTCGTGCGCAGTCGTGCGTGTGGCATGAAACAAAAAAAAGGCCGGCTGG
TTCTACCTGGTTCACAACAACAACAACGCTGCTACCTCCAAAATAG
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