mRNA_L-elsbetiae_contig6266.14879.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6266.14879.1
Unique NamemRNA_L-elsbetiae_contig6266.14879.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig6266.14879.1 vs. uniprot
Match: Q8QNA0_ESV1K (EsV-1-188 n=2 Tax=root TaxID=1 RepID=Q8QNA0_ESV1K)

HSP 1 Score: 568 bits (1465), Expect = 2.120e-200
Identity = 287/404 (71.04%), Postives = 341/404 (84.41%), Query Frame = 1 
Query:    1 ILWLGMTIIGYGLSTKKNWALSGLMSANTQMSIMMLLMVADHGSSYWDHSRVSDAEYCLTSMLTSKKLDGTTGRVVFGGLGALLAAASAYGMHSGSITLAATSVPFATIMFYLCWSPQTFQSCKANGLVTGALAFGLDAMTFVGIMEALMAASGNGDTSWHRPTLMYTIVISLSFFVLFGWQSEYGKRIKDGGTCAIDDEADAAAEKGKDRRPELYTGILMSVVSIVYFLYLKASFSEISCCSVYPALVFLGFDVLTKLQVWKRGEPLVGDALHRSFIYVTVQVLDVLLSSGSLIAAMSERGLVPRASASASASRGLLGTAAHMAGGSLTYVWSIARLVGAIVSGRGATGTAAAGSLNRLAEIVKLVTLNVAANAVPLYIDQKNAAYMLSFSPQNDLNVPCHVD 1212
            +L+LG +++GYGLST++ WA+SGL+S +TQMSIM+LLMVADHGSS+WDHSRVS  EYCLTSM+TSK LD T GR+VFGGLG LL AA+A+GM SGSITLAATSVPFA I +YLCWSPQ FQSC+ NGL TG LAFGLD MTFVGIME L+ +SGN DTSWH PT+MY +VIS  F  LFGW SEYGKR+K  G+C I+DEAD AA+K +D+RPELYTG+LMSV S+++++YLK SFSEISCC+ YPAL+FLGFDVL KLQVWKRGE LVGDALHRSFIY+TVQ LDV LSS SL++ MS++GL+    A    SRGLL  AAH+AGGS+TYVW++ RLV A++SG G     A GS+NRLAEIVKLV+LNVAAN VPL+IDQKN++Y+LS SPQNDLNVPCHVD
Sbjct:   40 LLFLGCSVVGYGLSTRRKWAVSGLVSPSTQMSIMLLLMVADHGSSFWDHSRVSSEEYCLTSMITSKTLDDTIGRLVFGGLGTLLTAAAAHGMRSGSITLAATSVPFAMISYYLCWSPQKFQSCRNNGLFTGGLAFGLDIMTFVGIMEVLLQSSGNKDTSWHVPTVMYCVVISALFVALFGWNSEYGKRVKP-GSCEINDEADEAADKQRDKRPELYTGVLMSVTSVMFYVYLKMSFSEISCCATYPALLFLGFDVLIKLQVWKRGEALVGDALHRSFIYLTVQALDVALSSSSLVSLMSDKGLLVGGVAK---SRGLLTHAAHLAGGSMTYVWNVLRLVVALISGGG--NGMAKGSINRLAEIVKLVSLNVAANLVPLFIDQKNSSYVLSASPQNDLNVPCHVD 437
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6266.14879.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Q8QNA0_ESV1K2.120e-20071.04EsV-1-188 n=2 Tax=root TaxID=1 RepID=Q8QNA0_ESV1K[more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6266contigL-elsbetiae_contig6266:10136..11350 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionEsV-1-188
Ec32 orthologEc-06_005040.1
Exons1
Model size1215
Cds size1200
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816688.627401-CDS-L-elsbetiae_contig6266:10135..113351622816688.627401-CDS-L-elsbetiae_contig6266:10135..11335Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6266 10136..11335 -
1691683741.3371372-CDS-L-elsbetiae_contig6266:10135..113351691683741.3371372-CDS-L-elsbetiae_contig6266:10135..11335Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6266 10136..11335 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816688.6419249-UTR-L-elsbetiae_contig6266:11335..113501622816688.6419249-UTR-L-elsbetiae_contig6266:11335..11350Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6266 11336..11350 -
1691683741.3513925-UTR-L-elsbetiae_contig6266:11335..113501691683741.3513925-UTR-L-elsbetiae_contig6266:11335..11350Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6266 11336..11350 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6266.14879.1prot_L-elsbetiae_contig6266.14879.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6266 10136..11335 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6266.14879.1

>prot_L-elsbetiae_contig6266.14879.1 ID=prot_L-elsbetiae_contig6266.14879.1|Name=mRNA_L-elsbetiae_contig6266.14879.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=400bp
MTIIGYGLSTKKNWALSGLMSANTQMSIMMLLMVADHGSSYWDHSRVSDA
EYCLTSMLTSKKLDGTTGRVVFGGLGALLAAASAYGMHSGSITLAATSVP
FATIMFYLCWSPQTFQSCKANGLVTGALAFGLDAMTFVGIMEALMAASGN
GDTSWHRPTLMYTIVISLSFFVLFGWQSEYGKRIKDGGTCAIDDEADAAA
EKGKDRRPELYTGILMSVVSIVYFLYLKASFSEISCCSVYPALVFLGFDV
LTKLQVWKRGEPLVGDALHRSFIYVTVQVLDVLLSSGSLIAAMSERGLVP
RASASASASRGLLGTAAHMAGGSLTYVWSIARLVGAIVSGRGATGTAAAG
SLNRLAEIVKLVTLNVAANAVPLYIDQKNAAYMLSFSPQNDLNVPCHVD*
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mRNA from alignment at L-elsbetiae_contig6266:10136..11350-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6266.14879.1 ID=mRNA_L-elsbetiae_contig6266.14879.1|Name=mRNA_L-elsbetiae_contig6266.14879.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1215bp|location=Sequence derived from alignment at L-elsbetiae_contig6266:10136..11350- (Laminarionema elsbetiae ELsaHSoW15)
ATTCTCTGGCTGGGGATGACCATCATCGGGTATGGCCTGTCCACCAAGAA
GAACTGGGCGTTGTCGGGACTGATGTCCGCCAACACGCAGATGTCAATCA
TGATGCTGCTGATGGTCGCCGACCACGGCAGCTCGTACTGGGATCATTCC
AGGGTCAGCGACGCCGAATATTGTTTAACGAGCATGCTGACATCCAAGAA
GCTGGACGGCACGACGGGAAGAGTTGTGTTTGGCGGGCTCGGCGCTCTGC
TCGCGGCGGCGTCGGCCTACGGTATGCACAGCGGGTCCATCACGCTGGCG
GCGACGAGCGTGCCTTTCGCGACCATCATGTTCTACCTGTGCTGGTCCCC
GCAGACCTTCCAGTCCTGCAAGGCGAACGGCCTCGTGACGGGGGCGCTGG
CTTTCGGGTTGGACGCGATGACTTTCGTGGGCATCATGGAGGCGCTGATG
GCGGCTTCCGGGAACGGGGACACCTCCTGGCACCGTCCGACTTTGATGTA
TACGATAGTCATCAGCTTGTCATTCTTCGTCCTGTTTGGGTGGCAGAGCG
AGTACGGGAAGAGGATCAAGGACGGTGGCACTTGCGCGATAGACGACGAG
GCCGACGCCGCCGCGGAGAAGGGGAAGGACAGGCGGCCGGAGCTGTACAC
GGGGATTCTCATGAGCGTGGTCAGCATTGTTTACTTTTTGTATTTGAAGG
CGAGCTTCAGCGAAATTTCCTGCTGCAGCGTGTACCCCGCCCTGGTGTTC
CTGGGCTTCGACGTGCTGACAAAACTCCAGGTCTGGAAGAGGGGGGAGCC
TCTGGTGGGCGACGCGCTCCACCGTTCTTTCATTTATGTAACCGTGCAGG
TTCTCGACGTACTGCTTAGCTCCGGCTCTCTCATAGCCGCCATGTCCGAG
AGAGGCCTGGTTCCCCGAGCGTCGGCTTCGGCTTCGGCTTCGCGCGGACT
GCTTGGAACCGCGGCGCACATGGCAGGGGGGTCGCTCACGTACGTGTGGA
GTATCGCAAGGCTGGTTGGGGCGATCGTGTCTGGCAGAGGGGCGACGGGC
ACAGCGGCGGCGGGCTCGCTCAACAGGCTGGCCGAAATTGTAAAACTAGT
TACTCTCAATGTGGCGGCGAACGCGGTTCCCCTCTACATCGACCAGAAGA
ACGCTGCGTACATGCTGAGTTTTAGCCCTCAGAACGATTTGAACGTGCCG
TGTCACGTGGATTGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig6266:10136..11350-

>mRNA_L-elsbetiae_contig6266.14879.1 ID=mRNA_L-elsbetiae_contig6266.14879.1|Name=mRNA_L-elsbetiae_contig6266.14879.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2400bp|location=Sequence derived from alignment at L-elsbetiae_contig6266:10136..11350- (Laminarionema elsbetiae ELsaHSoW15)
ATGACCATCATCGGGTATGGCCTGTCCACCAAGAAGAACTGGGCGTTGTC
GGGACTGATGTCCGCCAACACGCAGATGTCAATCATGATGCTGCTGATGG
TCGCCGACCACGGCAGCTCGTACTGGGATCATTCCAGGGTCAGCGACGCC
GAATATTGTTTAACGAGCATGCTGACATCCAAGAAGCTGGACGGCACGAC
GGGAAGAGTTGTGTTTGGCGGGCTCGGCGCTCTGCTCGCGGCGGCGTCGG
CCTACGGTATGCACAGCGGGTCCATCACGCTGGCGGCGACGAGCGTGCCT
TTCGCGACCATCATGTTCTACCTGTGCTGGTCCCCGCAGACCTTCCAGTC
CTGCAAGGCGAACGGCCTCGTGACGGGGGCGCTGGCTTTCGGGTTGGACG
CGATGACTTTCGTGGGCATCATGGAGGCGCTGATGGCGGCTTCCGGGAAC
GGGGACACCTCCTGGCACCGTCCGACTTTGATGTATACGATAGTCATCAG
CTTGTCATTCTTCGTCCTGTTTGGGTGGCAGAGCGAGTACGGGAAGAGGA
TCAAGGACGGTGGCACTTGCGCGATAGACGACGAGGCCGACGCCGCCGCG
GAGAAGGGGAAGGACAGGCGGCCGGAGCTGTACACGGGGATTCTCATGAG
CGTGGTCAGCATTGTTTACTTTTTGTATTTGAAGGCGAGCTTCAGCGAAA
TTTCCTGCTGCAGCGTGTACCCCGCCCTGGTGTTCCTGGGCTTCGACGTG
CTGACAAAACTCCAGGTCTGGAAGAGGGGGGAGCCTCTGGTGGGCGACGC
GCTCCACCGTTCTTTCATTTATGTAACCGTGCAGGTTCTCGACGTACTGC
TTAGCTCCGGCTCTCTCATAGCCGCCATGTCCGAGAGAGGCCTGGTTCCC
CGAGCGTCGGCTTCGGCTTCGGCTTCGCGCGGACTGCTTGGAACCGCGGC
GCACATGGCAGGGGGGTCGCTCACGTACGTGTGGAGTATCGCAAGGCTGG
TTGGGGCGATCGTGTCTGGCAGAGGGGCGACGGGCACAGCGGCGGCGGGC
TCGCTCAACAGGCTGGCCGAAATTGTAAAACTAGTTACTCTCAATGTGGC
GGCGAACGCGGTTCCCCTCTACATCGACCAGAAGAACGCTGCGTACATGC
TGAGTTTTAGCCCTCAGAACGATTTGAACGTGCCGTGTCACGTGGATTGA
ATGACCATCATCGGGTATGGCCTGTCCACCAAGAAGAACTGGGCGTTGTC
GGGACTGATGTCCGCCAACACGCAGATGTCAATCATGATGCTGCTGATGG
TCGCCGACCACGGCAGCTCGTACTGGGATCATTCCAGGGTCAGCGACGCC
GAATATTGTTTAACGAGCATGCTGACATCCAAGAAGCTGGACGGCACGAC
GGGAAGAGTTGTGTTTGGCGGGCTCGGCGCTCTGCTCGCGGCGGCGTCGG
CCTACGGTATGCACAGCGGGTCCATCACGCTGGCGGCGACGAGCGTGCCT
TTCGCGACCATCATGTTCTACCTGTGCTGGTCCCCGCAGACCTTCCAGTC
CTGCAAGGCGAACGGCCTCGTGACGGGGGCGCTGGCTTTCGGGTTGGACG
CGATGACTTTCGTGGGCATCATGGAGGCGCTGATGGCGGCTTCCGGGAAC
GGGGACACCTCCTGGCACCGTCCGACTTTGATGTATACGATAGTCATCAG
CTTGTCATTCTTCGTCCTGTTTGGGTGGCAGAGCGAGTACGGGAAGAGGA
TCAAGGACGGTGGCACTTGCGCGATAGACGACGAGGCCGACGCCGCCGCG
GAGAAGGGGAAGGACAGGCGGCCGGAGCTGTACACGGGGATTCTCATGAG
CGTGGTCAGCATTGTTTACTTTTTGTATTTGAAGGCGAGCTTCAGCGAAA
TTTCCTGCTGCAGCGTGTACCCCGCCCTGGTGTTCCTGGGCTTCGACGTG
CTGACAAAACTCCAGGTCTGGAAGAGGGGGGAGCCTCTGGTGGGCGACGC
GCTCCACCGTTCTTTCATTTATGTAACCGTGCAGGTTCTCGACGTACTGC
TTAGCTCCGGCTCTCTCATAGCCGCCATGTCCGAGAGAGGCCTGGTTCCC
CGAGCGTCGGCTTCGGCTTCGGCTTCGCGCGGACTGCTTGGAACCGCGGC
GCACATGGCAGGGGGGTCGCTCACGTACGTGTGGAGTATCGCAAGGCTGG
TTGGGGCGATCGTGTCTGGCAGAGGGGCGACGGGCACAGCGGCGGCGGGC
TCGCTCAACAGGCTGGCCGAAATTGTAAAACTAGTTACTCTCAATGTGGC
GGCGAACGCGGTTCCCCTCTACATCGACCAGAAGAACGCTGCGTACATGC
TGAGTTTTAGCCCTCAGAACGATTTGAACGTGCCGTGTCACGTGGATTGA
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