mRNA_L-elsbetiae_contig6266.14876.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6266.14876.1
Unique NamemRNA_L-elsbetiae_contig6266.14876.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig6266.14876.1 vs. uniprot
Match: Q8QNB9_ESV1K (EsV-1-165 n=1 Tax=Ectocarpus siliculosus virus 1 (isolate New Zealand/Kaikoura/1988) TaxID=654926 RepID=Q8QNB9_ESV1K)

HSP 1 Score: 72.8 bits (177), Expect = 1.410e-14
Identity = 46/113 (40.71%), Postives = 69/113 (61.06%), Query Frame = 1 
Query:    1 MEFLCACFRKKR---AYVEIQTEPD------EPVQYVGFQ---DNDANSLKSTLSLSSVYKKMSEWSLPKSRQVNLFTLSEEEHDFLIKRDEGSPPPVVDPDNNFEDVVDQTV 303
            M+++C   +KKR   AY  ++ +P+      EP QY+      + D  +     +L+S+YKK+SEWSLPK R++NLFT++EEEHDFL+   E      VD   NF+DVVD+ +
Sbjct:    1 MDWICCLRKKKRLREAYDALRKDPESPSEEHEPAQYISASLDSEYDLENFHLKRTLTSLYKKVSEWSLPKKRKMNLFTVNEEEHDFLMNDIE------VD---NFDDVVDEKI 104
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BLAST of mRNA_L-elsbetiae_contig6266.14876.1 vs. uniprot
Match: D8LPI4_ECTSI (EsV-1-165 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPI4_ECTSI)

HSP 1 Score: 60.8 bits (146), Expect = 7.170e-10
Identity = 48/118 (40.68%), Postives = 64/118 (54.24%), Query Frame = 1 
Query:    1 MEFLCACFRKKR---AY--------VEIQTEPDEPVQYVGFQ-----DNDANSLKSTLSLSSVYKKMSEWSLPKS-RQVNLFTLSEEEHDFLIKRDEGSPPPVVDPDNNFEDVVDQTV 303
            M ++C    KKR   AY         E   E  EP QYV        D +   LK+TL  +S+YKK+SEWSLPK  R++NLFT++EEEHDFL+   E          + F+DVVD+ +
Sbjct:    1 MTWICCLRNKKRLREAYDALRHERESESPAEDHEPAQYVSASLDSEYDLENFHLKNTL--TSLYKKVSEWSLPKQKRKMNLFTVNEEEHDFLMNDIEA---------DIFDDVVDEKI 107
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6266.14876.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Q8QNB9_ESV1K1.410e-1440.71EsV-1-165 n=1 Tax=Ectocarpus siliculosus virus 1 (... [more]
D8LPI4_ECTSI7.170e-1040.68EsV-1-165 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6266contigL-elsbetiae_contig6266:5351..5656 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionEsV-1-165
Ec32 orthologEc-06_005270.1
Exons1
Model size306
Cds size306
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816688.486551-CDS-L-elsbetiae_contig6266:5350..56561622816688.486551-CDS-L-elsbetiae_contig6266:5350..5656Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6266 5351..5656 -
1691683741.2619991-CDS-L-elsbetiae_contig6266:5350..56561691683741.2619991-CDS-L-elsbetiae_contig6266:5350..5656Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6266 5351..5656 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6266.14876.1prot_L-elsbetiae_contig6266.14876.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6266 5351..5656 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6266.14876.1

>prot_L-elsbetiae_contig6266.14876.1 ID=prot_L-elsbetiae_contig6266.14876.1|Name=mRNA_L-elsbetiae_contig6266.14876.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=102bp
MEFLCACFRKKRAYVEIQTEPDEPVQYVGFQDNDANSLKSTLSLSSVYKK
MSEWSLPKSRQVNLFTLSEEEHDFLIKRDEGSPPPVVDPDNNFEDVVDQT
V*
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mRNA from alignment at L-elsbetiae_contig6266:5351..5656-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6266.14876.1 ID=mRNA_L-elsbetiae_contig6266.14876.1|Name=mRNA_L-elsbetiae_contig6266.14876.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=306bp|location=Sequence derived from alignment at L-elsbetiae_contig6266:5351..5656- (Laminarionema elsbetiae ELsaHSoW15)
ATGGAATTTTTGTGTGCCTGTTTCCGAAAGAAAAGGGCCTATGTGGAAAT
CCAGACCGAGCCTGATGAGCCTGTGCAGTACGTGGGTTTTCAGGACAACG
ATGCCAACAGTTTAAAATCCACACTTAGCCTGTCTAGCGTCTACAAGAAA
ATGTCTGAGTGGTCGTTGCCCAAGTCAAGACAGGTCAATTTGTTCACGCT
GAGCGAGGAGGAGCACGACTTCCTGATAAAGCGCGACGAAGGCTCGCCGC
CGCCTGTTGTGGATCCGGACAATAATTTTGAGGACGTCGTAGATCAGACT
GTGTGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig6266:5351..5656-

>mRNA_L-elsbetiae_contig6266.14876.1 ID=mRNA_L-elsbetiae_contig6266.14876.1|Name=mRNA_L-elsbetiae_contig6266.14876.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=612bp|location=Sequence derived from alignment at L-elsbetiae_contig6266:5351..5656- (Laminarionema elsbetiae ELsaHSoW15)
ATGGAATTTTTGTGTGCCTGTTTCCGAAAGAAAAGGGCCTATGTGGAAAT
CCAGACCGAGCCTGATGAGCCTGTGCAGTACGTGGGTTTTCAGGACAACG
ATGCCAACAGTTTAAAATCCACACTTAGCCTGTCTAGCGTCTACAAGAAA
ATGTCTGAGTGGTCGTTGCCCAAGTCAAGACAGGTCAATTTGTTCACGCT
GAGCGAGGAGGAGCACGACTTCCTGATAAAGCGCGACGAAGGCTCGCCGC
CGCCTGTTGTGGATCCGGACAATAATTTTGAGGACGTCGTAGATCAGACT
GTGTGAATGGAATTTTTGTGTGCCTGTTTCCGAAAGAAAAGGGCCTATGT
GGAAATCCAGACCGAGCCTGATGAGCCTGTGCAGTACGTGGGTTTTCAGG
ACAACGATGCCAACAGTTTAAAATCCACACTTAGCCTGTCTAGCGTCTAC
AAGAAAATGTCTGAGTGGTCGTTGCCCAAGTCAAGACAGGTCAATTTGTT
CACGCTGAGCGAGGAGGAGCACGACTTCCTGATAAAGCGCGACGAAGGCT
CGCCGCCGCCTGTTGTGGATCCGGACAATAATTTTGAGGACGTCGTAGAT
CAGACTGTGTGA
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