mRNA_L-elsbetiae_contig6266.14875.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6266.14875.1
Unique NamemRNA_L-elsbetiae_contig6266.14875.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6266.14875.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6266contigL-elsbetiae_contig6266:3798..4279 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size371
Cds size369
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816688.4377904-CDS-L-elsbetiae_contig6266:3797..38481622816688.4377904-CDS-L-elsbetiae_contig6266:3797..3848Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6266 3798..3848 +
1691683741.2368214-CDS-L-elsbetiae_contig6266:3797..38481691683741.2368214-CDS-L-elsbetiae_contig6266:3797..3848Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6266 3798..3848 +
1622816688.4508588-CDS-L-elsbetiae_contig6266:3960..42781622816688.4508588-CDS-L-elsbetiae_contig6266:3960..4278Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6266 3961..4278 +
1691683741.248585-CDS-L-elsbetiae_contig6266:3960..42781691683741.248585-CDS-L-elsbetiae_contig6266:3960..4278Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6266 3961..4278 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6266.14875.1prot_L-elsbetiae_contig6266.14875.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6266 3798..4278 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6266.14875.1

>prot_L-elsbetiae_contig6266.14875.1 ID=prot_L-elsbetiae_contig6266.14875.1|Name=mRNA_L-elsbetiae_contig6266.14875.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=123bp
AATSATAAHGEKRGPSEPLVRPLQQRHKPRVGGGSGGGTGSVGSGSGRGK
PGGSGSNDGGGDGEITGAPDADVFDINNFSGSEGDGGNGHSGRGRGGDRG
SNGGGGGSGKGGGGASGASSNGG
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mRNA from alignment at L-elsbetiae_contig6266:3798..4279+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6266.14875.1 ID=mRNA_L-elsbetiae_contig6266.14875.1|Name=mRNA_L-elsbetiae_contig6266.14875.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=482bp|location=Sequence derived from alignment at L-elsbetiae_contig6266:3798..4279+ (Laminarionema elsbetiae ELsaHSoW15)
GCCGCTACGAGTGCCACCGCGGCTCACGGGGAGAAACGTGGGCCATCAGA
GGTAACGCTGTAGCAAGTGTAACGTAGGTCAATGTTCAATTACGTGTTCC
ATTCAAGACAAAACAAATCTGACCCACCTCACCCCAACCAACCAACTTTG
TCGATGGTCGCAGCCCCTGGTCAGGCCCCTGCAGCAGCGTCATAAACCGC
GCGTTGGAGGAGGTAGCGGTGGTGGCACTGGAAGCGTTGGAAGCGGCAGC
GGCAGGGGCAAGCCAGGCGGCAGCGGTAGCAACGACGGCGGCGGGGACGG
AGAGATCACAGGGGCCCCGGATGCCGACGTGTTCGACATCAATAACTTCT
CCGGTTCCGAAGGCGACGGCGGCAACGGCCACAGTGGCAGGGGCAGGGGA
GGTGACAGGGGCAGCAACGGTGGCGGCGGCGGAAGCGGCAAAGGGGGTGG
CGGTGCCAGCGGTGCCAGCAGCAACGGCGGTG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig6266:3798..4279+

>mRNA_L-elsbetiae_contig6266.14875.1 ID=mRNA_L-elsbetiae_contig6266.14875.1|Name=mRNA_L-elsbetiae_contig6266.14875.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=738bp|location=Sequence derived from alignment at L-elsbetiae_contig6266:3798..4279+ (Laminarionema elsbetiae ELsaHSoW15)
GCCGCTACGAGTGCCACCGCGGCTCACGGGGAGAAACGTGGGCCATCAGA
GGCCGCTACGAGTGCCACCGCGGCTCACGGGGAGAAACGTGGGCCATCAG
AGCCCCTGGTCAGGCCCCTGCAGCAGCGTCATAAACCGCGCGTTGGAGGA
GGTAGCGGTGGTGGCACTGGAAGCGTTGGAAGCGGCAGCGGCAGGGGCAA
GCCAGGCGGCAGCGGTAGCAACGACGGCGGCGGGGACGGAGAGATCACAG
GGGCCCCGGATGCCGACGTGTTCGACATCAATAACTTCTCCGGTTCCGAA
GGCGACGGCGGCAACGGCCACAGTGGCAGGGGCAGGGGAGGTGACAGGGG
CAGCAACGGTGGCGGCGGCGGAAGCGGCAAAGGGGGTGGCGGTGCCAGCG
GTGCCAGCAGCAACGGCGGTCCCCTGGTCAGGCCCCTGCAGCAGCGTCAT
AAACCGCGCGTTGGAGGAGGTAGCGGTGGTGGCACTGGAAGCGTTGGAAG
CGGCAGCGGCAGGGGCAAGCCAGGCGGCAGCGGTAGCAACGACGGCGGCG
GGGACGGAGAGATCACAGGGGCCCCGGATGCCGACGTGTTCGACATCAAT
AACTTCTCCGGTTCCGAAGGCGACGGCGGCAACGGCCACAGTGGCAGGGG
CAGGGGAGGTGACAGGGGCAGCAACGGTGGCGGCGGCGGAAGCGGCAAAG
GGGGTGGCGGTGCCAGCGGTGCCAGCAGCAACGGCGGT
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