mRNA_L-elsbetiae_contig6266.14874.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6266.14874.1
Unique NamemRNA_L-elsbetiae_contig6266.14874.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6266.14874.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6266contigL-elsbetiae_contig6266:1582..3740 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size2015
Cds size1326
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6266.14874.1prot_L-elsbetiae_contig6266.14874.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6266 2270..3740 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816688.3815942-UTR-L-elsbetiae_contig6266:1581..22691622816688.3815942-UTR-L-elsbetiae_contig6266:1581..2269Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6266 1582..2269 +
1691683741.1961582-UTR-L-elsbetiae_contig6266:1581..22691691683741.1961582-UTR-L-elsbetiae_contig6266:1581..2269Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6266 1582..2269 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816688.392965-CDS-L-elsbetiae_contig6266:2269..26651622816688.392965-CDS-L-elsbetiae_contig6266:2269..2665Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6266 2270..2665 +
1691683741.2075741-CDS-L-elsbetiae_contig6266:2269..26651691683741.2075741-CDS-L-elsbetiae_contig6266:2269..2665Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6266 2270..2665 +
1622816688.404969-CDS-L-elsbetiae_contig6266:2810..37401622816688.404969-CDS-L-elsbetiae_contig6266:2810..3740Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6266 2811..3740 +
1691683741.2250228-CDS-L-elsbetiae_contig6266:2810..37401691683741.2250228-CDS-L-elsbetiae_contig6266:2810..3740Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6266 2811..3740 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6266.14874.1

>prot_L-elsbetiae_contig6266.14874.1 ID=prot_L-elsbetiae_contig6266.14874.1|Name=mRNA_L-elsbetiae_contig6266.14874.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=442bp
MDVQRFKMFLLESHLRTEEGASAHRFVGKGAGSGNVVGGGGASESGGSGS
GKGGGGASSNGGGSGSGKRSDSTNGGGRISRQTVTRSGSGGDSTNGGGGD
RGGGRGGGGSSGGGGSNGGGGSRGDEPLLADKVCQYQPPFAEEREESSPR
ITTDFERYYRKQHINPNNWPVKATPIPFESISTPELEQHCLLDDASNVVF
HPHNSGSLGLPASDITYCDISPYKLVSGRPKNTYDLATNHWKWGRSFLLS
KVDGKIIVPRDVNGVSMDRSEFTSLQRDMCLLMEDNAYHGKTRNMSKHWF
AEGGKGGGSGSGSGGGSGSGKGGGGGSSNAGGDGDSDSDSGRGGDRGSGK
GGGGSSSNGDSDSGRGGDRGSGKGGGGSSSSGDSDSDTGLGGDSGSGKGG
GGSSSSGDSDSDSGRGGDSGSGKGGGGSSSNGGGGTSSNGGG
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mRNA from alignment at L-elsbetiae_contig6266:1582..3740+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6266.14874.1 ID=mRNA_L-elsbetiae_contig6266.14874.1|Name=mRNA_L-elsbetiae_contig6266.14874.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2159bp|location=Sequence derived from alignment at L-elsbetiae_contig6266:1582..3740+ (Laminarionema elsbetiae ELsaHSoW15)
GAGGCACGACGAGAGGCGGCGAGGATGCAGATAGTACAGGAACGAGAAGA
GGCGGAGATGGTGGCTAATGAAGCTAACAAGAAGGTAAACGAGCTAAAAC
GTAAAGAGGTGGTGCTAGAGACGGAACAGCCGCCTAACGGAGAACTTGCA
TAATTGGTAGTTCTCGGACAAATACGTTCTTCTAAAGTGTGAAACAAGTG
CGAAATTTATCCTAAACTGAAGTTCTGCACAATGACTTTGATTTTGTCAA
ATCCCTTTCAAACTGTAAGACACTCTGAGCATGAACTAAGTATACTCCTT
GGTCGTATTTACACGTGTTTCCTGAATACAGAACCCGTTCGGCCCGGTCG
AGCGCGAAACATTACTTGAACATCACTTCAGCCCGGCCGATGTGGATGAA
TTCCTCTCAAAGTATAAAAGTGGCCCCCTGTTGAGGCCCAATTACCGAGC
CAAGATACCTGTCACTTTGGGCGACACGGGTGGCGAGGACCCTATCGTGA
AACTGTGGCCATGCAACTCGGGTTTACTCTCCTCTTCTAGTGAGACGCGT
ACTCTTGTACAAGGGACTACCCTTGCAAAAATATTCAAGAAGGCAGAACC
TTTGTACAACAAACTGAAACTGATCGGCGTTACGGAAAGTGGGAAGGCTG
TTAGAGCTCCTGATAGCGTAGTCTCTGACACAGTGGGGATGGACGTTCAG
AGGTTTAAGATGTTCTTGCTAGAGTCGCATCTGAGGACAGAAGAGGGTGC
GTCTGCACACCGGTTCGTGGGCAAGGGAGCGGGCTCGGGAAACGTCGTCG
GGGGTGGTGGTGCCTCGGAGAGCGGCGGTAGCGGCAGTGGCAAAGGGGGT
GGCGGTGCCAGCAGCAATGGCGGCGGCAGCGGAAGCGGCAAGAGGAGCGA
CAGCACCAACGGCGGAGGCAGGATTAGTCGTCAAACCGTCACTAGGAGTG
GTAGCGGTGGCGACAGCACCAACGGTGGCGGAGGCGACCGCGGTGGTGGT
AGAGGTGGCGGTGGCAGCAGCGGTGGCGGTGGCAGCAACGGTGGCGGTGG
CAGCAGAGGCGACGAGCCTCTTCTGGCTGACAAGGTAATTTTTTTTGGCA
GTTCTTTCAGGAAAAAATTCACTAGATCCGATGGTCCACTTCGTGTAACC
GTCCATTTTTCGCACAAACTGTATCTGATTCATATGTGTTTTTTGCCTGA
TTAAACCGGTGTGTATCTTGCGCGAACAGGTATGCCAGTACCAACCGCCG
TTTGCCGAAGAGCGCGAGGAATCTTCGCCACGCATAACCACCGACTTCGA
GCGATATTATCGTAAACAGCACATCAACCCGAACAACTGGCCAGTGAAGG
CAACACCGATACCATTCGAGAGCATTTCCACTCCTGAGTTGGAGCAGCAT
TGTCTACTAGATGATGCTTCAAACGTGGTGTTTCATCCCCATAACTCGGG
GTCACTCGGCCTGCCCGCGTCGGATATCACCTACTGTGACATTAGTCCGT
ACAAACTCGTGAGTGGACGCCCCAAAAATACTTACGACTTGGCGACCAAT
CACTGGAAGTGGGGGAGATCCTTTTTGCTTTCAAAGGTCGACGGAAAAAT
AATTGTCCCCCGAGATGTCAACGGTGTTAGTATGGACCGGTCGGAGTTCA
CCTCTCTTCAAAGGGATATGTGTCTGCTCATGGAGGACAATGCTTATCAC
GGTAAAACCCGCAACATGTCAAAGCATTGGTTCGCCGAAGGCGGCAAAGG
AGGTGGCAGCGGCAGCGGCAGCGGTGGTGGTAGCGGCAGTGGCAAAGGGG
GTGGCGGCGGCAGCAGCAACGCCGGCGGCGACGGCGACAGCGACAGCGAC
AGCGGCAGGGGAGGTGACAGAGGCAGCGGCAAAGGGGGCGGCGGTTCCAG
CAGCAACGGTGACAGCGACAGCGGCAGGGGAGGTGACAGGGGCAGCGGCA
AAGGGGGTGGCGGTTCCAGCAGCAGCGGTGATAGCGACAGCGACACGGGC
CTTGGAGGTGACAGTGGCAGCGGCAAAGGGGGTGGTGGTTCCAGCAGCAG
CGGTGATAGCGACAGCGACAGCGGCAGGGGAGGTGACAGCGGCAGCGGCA
AAGGGGGCGGCGGTTCCAGCAGCAACGGGGGCGGTGGTACCAGCAGCAAC
GGGGGCGGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig6266:1582..3740+

>mRNA_L-elsbetiae_contig6266.14874.1 ID=mRNA_L-elsbetiae_contig6266.14874.1|Name=mRNA_L-elsbetiae_contig6266.14874.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2652bp|location=Sequence derived from alignment at L-elsbetiae_contig6266:1582..3740+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGACGTTCAGAGGTTTAAGATGTTCTTGCTAGAGTCGCATCTGAGGAC
AGAAGAGGGTGCGTCTGCACACCGGTTCGTGGGCAAGGGAGCGGGCTCGG
GAAACGTCGTCGGGGGTGGTGGTGCCTCGGAGAGCGGCGGTAGCGGCAGT
GGCAAAGGGGGTGGCGGTGCCAGCAGCAATGGCGGCGGCAGCGGAAGCGG
CAAGAGGAGCGACAGCACCAACGGCGGAGGCAGGATTAGTCGTCAAACCG
TCACTAGGAGTGGTAGCGGTGGCGACAGCACCAACGGTGGCGGAGGCGAC
CGCGGTGGTGGTAGAGGTGGCGGTGGCAGCAGCGGTGGCGGTGGCAGCAA
CGGTGGCGGTGGCAGCAGAGGCGACGAGCCTCTTCTGGCTGACAAGATGG
ACGTTCAGAGGTTTAAGATGTTCTTGCTAGAGTCGCATCTGAGGACAGAA
GAGGGTGCGTCTGCACACCGGTTCGTGGGCAAGGGAGCGGGCTCGGGAAA
CGTCGTCGGGGGTGGTGGTGCCTCGGAGAGCGGCGGTAGCGGCAGTGGCA
AAGGGGGTGGCGGTGCCAGCAGCAATGGCGGCGGCAGCGGAAGCGGCAAG
AGGAGCGACAGCACCAACGGCGGAGGCAGGATTAGTCGTCAAACCGTCAC
TAGGAGTGGTAGCGGTGGCGACAGCACCAACGGTGGCGGAGGCGACCGCG
GTGGTGGTAGAGGTGGCGGTGGCAGCAGCGGTGGCGGTGGCAGCAACGGT
GGCGGTGGCAGCAGAGGCGACGAGCCTCTTCTGGCTGACAAGGTATGCCA
GTACCAACCGCCGTTTGCCGAAGAGCGCGAGGAATCTTCGCCACGCATAA
CCACCGACTTCGAGCGATATTATCGTAAACAGCACATCAACCCGAACAAC
TGGCCAGTGAAGGCAACACCGATACCATTCGAGAGCATTTCCACTCCTGA
GTTGGAGCAGCATTGTCTACTAGATGATGCTTCAAACGTGGTGTTTCATC
CCCATAACTCGGGGTCACTCGGCCTGCCCGCGTCGGATATCACCTACTGT
GACATTAGTCCGTACAAACTCGTGAGTGGACGCCCCAAAAATACTTACGA
CTTGGCGACCAATCACTGGAAGTGGGGGAGATCCTTTTTGCTTTCAAAGG
TCGACGGAAAAATAATTGTCCCCCGAGATGTCAACGGTGTTAGTATGGAC
CGGTCGGAGTTCACCTCTCTTCAAAGGGATATGTGTCTGCTCATGGAGGA
CAATGCTTATCACGGTAAAACCCGCAACATGTCAAAGCATTGGTTCGCCG
AAGGCGGCAAAGGAGGTGGCAGCGGCAGCGGCAGCGGTGGTGGTAGCGGC
AGTGGCAAAGGGGGTGGCGGCGGCAGCAGCAACGCCGGCGGCGACGGCGA
CAGCGACAGCGACAGCGGCAGGGGAGGTGACAGAGGCAGCGGCAAAGGGG
GCGGCGGTTCCAGCAGCAACGGTGACAGCGACAGCGGCAGGGGAGGTGAC
AGGGGCAGCGGCAAAGGGGGTGGCGGTTCCAGCAGCAGCGGTGATAGCGA
CAGCGACACGGGCCTTGGAGGTGACAGTGGCAGCGGCAAAGGGGGTGGTG
GTTCCAGCAGCAGCGGTGATAGCGACAGCGACAGCGGCAGGGGAGGTGAC
AGCGGCAGCGGCAAAGGGGGCGGCGGTTCCAGCAGCAACGGGGGCGGTGG
TACCAGCAGCAACGGGGGCGGCGTATGCCAGTACCAACCGCCGTTTGCCG
AAGAGCGCGAGGAATCTTCGCCACGCATAACCACCGACTTCGAGCGATAT
TATCGTAAACAGCACATCAACCCGAACAACTGGCCAGTGAAGGCAACACC
GATACCATTCGAGAGCATTTCCACTCCTGAGTTGGAGCAGCATTGTCTAC
TAGATGATGCTTCAAACGTGGTGTTTCATCCCCATAACTCGGGGTCACTC
GGCCTGCCCGCGTCGGATATCACCTACTGTGACATTAGTCCGTACAAACT
CGTGAGTGGACGCCCCAAAAATACTTACGACTTGGCGACCAATCACTGGA
AGTGGGGGAGATCCTTTTTGCTTTCAAAGGTCGACGGAAAAATAATTGTC
CCCCGAGATGTCAACGGTGTTAGTATGGACCGGTCGGAGTTCACCTCTCT
TCAAAGGGATATGTGTCTGCTCATGGAGGACAATGCTTATCACGGTAAAA
CCCGCAACATGTCAAAGCATTGGTTCGCCGAAGGCGGCAAAGGAGGTGGC
AGCGGCAGCGGCAGCGGTGGTGGTAGCGGCAGTGGCAAAGGGGGTGGCGG
CGGCAGCAGCAACGCCGGCGGCGACGGCGACAGCGACAGCGACAGCGGCA
GGGGAGGTGACAGAGGCAGCGGCAAAGGGGGCGGCGGTTCCAGCAGCAAC
GGTGACAGCGACAGCGGCAGGGGAGGTGACAGGGGCAGCGGCAAAGGGGG
TGGCGGTTCCAGCAGCAGCGGTGATAGCGACAGCGACACGGGCCTTGGAG
GTGACAGTGGCAGCGGCAAAGGGGGTGGTGGTTCCAGCAGCAGCGGTGAT
AGCGACAGCGACAGCGGCAGGGGAGGTGACAGCGGCAGCGGCAAAGGGGG
CGGCGGTTCCAGCAGCAACGGGGGCGGTGGTACCAGCAGCAACGGGGGCG
GC
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