mRNA_L-elsbetiae_contig6263.14871.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6263.14871.1
Unique NamemRNA_L-elsbetiae_contig6263.14871.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig6263.14871.1 vs. uniprot
Match: D7G0T3_ECTSI (Retinoblastoma binding protein 5 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0T3_ECTSI)

HSP 1 Score: 114 bits (284), Expect = 4.680e-28
Identity = 54/61 (88.52%), Postives = 57/61 (93.44%), Query Frame = 1 
Query:    1 GIGRVIEAHSRAITALCWARGGRRLLSASQDQRLHYWALEPARPELIRVICLDSPIFSALV 183
            GIGRV+EAH+RAITAL WARGGRRLLSAS DQRLHYWALEP RPELIRVICLDSPI SAL+
Sbjct:   58 GIGRVVEAHARAITALSWARGGRRLLSASHDQRLHYWALEPPRPELIRVICLDSPIMSALM 118
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6263.14871.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G0T3_ECTSI4.680e-2888.52Retinoblastoma binding protein 5 n=1 Tax=Ectocarpu... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6263contigL-elsbetiae_contig6263:10851..11036 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score115.2
Seed ortholog evalue1.1e-23
Seed eggNOG ortholog2880.D7G0T3
Preferred nameRBBP5
KEGG koko:K14961
KEGG Pathwayko04934,map04934
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000228,GO:0000723,GO:0000785,GO:0000790,GO:0000922,GO:0001067,GO:0002682,GO:0003006,GO:0003674,GO:0003676,GO:0003677,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005730,GO:0005819,GO:0005856,GO:0006139,GO:0006259,GO:0006323,GO:0006325,GO:0006333,GO:0006338,GO:0006342,GO:0006348,GO:0006355,GO:0006464,GO:0006479,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007275,GO:0007276,GO:0007281,GO:0007610,GO:0008150,GO:0008152,GO:0008168,GO:0008170,GO:0008213,GO:0008276,GO:0008757,GO:0009791,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010228,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0015630,GO:0016043,GO:0016278,GO:0016279,GO:0016458,GO:0016569,GO:0016570,GO:0016571,GO:0016740,GO:0016741,GO:0018022,GO:0018023,GO:0018024,GO:0018027,GO:0018193,GO:0018205,GO:0018991,GO:0019098,GO:0019219,GO:0019222,GO:0019538,GO:0019953,GO:0022412,GO:0022414,GO:0022607,GO:0030154,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031497,GO:0031507,GO:0031974,GO:0031981,GO:0032200,GO:0032259,GO:0032501,GO:0032502,GO:0032504,GO:0032991,GO:0033554,GO:0034401,GO:0034641,GO:0034708,GO:0034968,GO:0035064,GO:0035097,GO:0036211,GO:0040029,GO:0042054,GO:0042393,GO:0042592,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043414,GO:0043627,GO:0043687,GO:0043933,GO:0044085,GO:0044212,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044430,GO:0044446,GO:0044451,GO:0044454,GO:0044464,GO:0044648,GO:0044665,GO:0044666,GO:0044703,GO:0045595,GO:0045637,GO:0045652,GO:0045814,GO:0045892,GO:0045934,GO:0046483,GO:0048188,GO:0048468,GO:0048519,GO:0048523,GO:0048608,GO:0048609,GO:0048731,GO:0048856,GO:0048869,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051171,GO:0051172,GO:0051239,GO:0051252,GO:0051253,GO:0051276,GO:0051568,GO:0051704,GO:0051716,GO:0060249,GO:0060255,GO:0060290,GO:0061458,GO:0065003,GO:0065007,GO:0065008,GO:0070013,GO:0070828,GO:0070868,GO:0070869,GO:0071103,GO:0071339,GO:0071704,GO:0071840,GO:0080090,GO:0080182,GO:0090304,GO:0097159,GO:0097549,GO:0140030,GO:0140034,GO:0140096,GO:1901360,GO:1901363,GO:1901564,GO:1902494,GO:1902679,GO:1903506,GO:1903507,GO:1903706,GO:1904837,GO:1990234,GO:2000026,GO:2000112,GO:2000113,GO:2001141
EggNOG free text desc.histone H3-K4 methylation
EggNOG OGsKOG1273@1,KOG1273@2759
COG Functional cat.P
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03036
Exons1
Model size186
Cds size186
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816688.1128123-CDS-L-elsbetiae_contig6263:10850..110361622816688.1128123-CDS-L-elsbetiae_contig6263:10850..11036Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6263 10851..11036 +
1691683741.006738-CDS-L-elsbetiae_contig6263:10850..110361691683741.006738-CDS-L-elsbetiae_contig6263:10850..11036Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6263 10851..11036 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6263.14871.1prot_L-elsbetiae_contig6263.14871.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6263 10851..11036 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6263.14871.1

>prot_L-elsbetiae_contig6263.14871.1 ID=prot_L-elsbetiae_contig6263.14871.1|Name=mRNA_L-elsbetiae_contig6263.14871.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=62bp
GIGRVIEAHSRAITALCWARGGRRLLSASQDQRLHYWALEPARPELIRVI
CLDSPIFSALVR
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mRNA from alignment at L-elsbetiae_contig6263:10851..11036+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6263.14871.1 ID=mRNA_L-elsbetiae_contig6263.14871.1|Name=mRNA_L-elsbetiae_contig6263.14871.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=186bp|location=Sequence derived from alignment at L-elsbetiae_contig6263:10851..11036+ (Laminarionema elsbetiae ELsaHSoW15)
GGCATCGGCCGGGTCATAGAGGCCCACTCGCGGGCCATCACGGCGCTGTG
CTGGGCGCGGGGCGGGAGGCGCCTGCTTTCCGCGTCGCAGGACCAGCGGC
TGCACTACTGGGCGCTGGAGCCGGCCAGGCCGGAGCTGATCCGGGTGATC
TGCCTCGATTCACCCATCTTCTCTGCTCTGGTGAGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig6263:10851..11036+

>mRNA_L-elsbetiae_contig6263.14871.1 ID=mRNA_L-elsbetiae_contig6263.14871.1|Name=mRNA_L-elsbetiae_contig6263.14871.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=372bp|location=Sequence derived from alignment at L-elsbetiae_contig6263:10851..11036+ (Laminarionema elsbetiae ELsaHSoW15)
GGCATCGGCCGGGTCATAGAGGCCCACTCGCGGGCCATCACGGCGCTGTG
CTGGGCGCGGGGCGGGAGGCGCCTGCTTTCCGCGTCGCAGGACCAGCGGC
TGCACTACTGGGCGCTGGAGCCGGCCAGGCCGGAGCTGATCCGGGTGATC
TGCCTCGATTCACCCATCTTCTCTGCTCTGGTGAGGGGCATCGGCCGGGT
CATAGAGGCCCACTCGCGGGCCATCACGGCGCTGTGCTGGGCGCGGGGCG
GGAGGCGCCTGCTTTCCGCGTCGCAGGACCAGCGGCTGCACTACTGGGCG
CTGGAGCCGGCCAGGCCGGAGCTGATCCGGGTGATCTGCCTCGATTCACC
CATCTTCTCTGCTCTGGTGAGG
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