mRNA_L-elsbetiae_contig6261.14868.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6261.14868.1
Unique NamemRNA_L-elsbetiae_contig6261.14868.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig6261.14868.1 vs. uniprot
Match: D8LE95_ECTSI (Tyrosyl-DNA phosphodiesterase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LE95_ECTSI)

HSP 1 Score: 130 bits (327), Expect = 2.130e-30
Identity = 58/88 (65.91%), Postives = 70/88 (79.55%), Query Frame = 3 
Query:  621 EGRLRVLWPSVEAVRASSKGWTSGGSICCNGENMYGGGFKRADMSKYRSNEPAPELKPVLRRWKRNPSTNRERGAPHIKTFLRYHQVA 884
            E  LRV+WPSVEAVR SS+GW +GGSICCN  NMYGG +K  +M  YRSN P PEL+P+LR+WK NP+ NR R APHIK++LRY +VA
Sbjct:  366 EQHLRVVWPSVEAVRTSSQGWIAGGSICCNTVNMYGGKYKWPNMDNYRSNTPLPELRPLLRKWKGNPAVNRTRDAPHIKSYLRYREVA 453
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BLAST of mRNA_L-elsbetiae_contig6261.14868.1 vs. uniprot
Match: A0A225WPR3_9STRA (Tyrosyl-DNA phosphodiesterase n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225WPR3_9STRA)

HSP 1 Score: 63.5 bits (153), Expect = 1.800e-7
Identity = 40/92 (43.48%), Postives = 52/92 (56.52%), Query Frame = 2 
Query:  305 LRQHDFRTARVALVPSVPGTRRHRHKGKDAHRYGHMRIRALLSR*KESGAIARLEEGSHKVAIQVSSLASRSPDPTSWLH-ELLESFLPQER 577
            L++ DF TARVALVP+VPG     HKGKD  +YGH+R+R LL        + ++    + +  Q SSL S       WL  E  ESFLP +R
Sbjct:  327 LKRFDFSTARVALVPAVPGV----HKGKDMEKYGHLRVRKLLK-------MYKVPPTDNPLICQFSSLGSLDE---KWLFGEFAESFLPGKR 404
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BLAST of mRNA_L-elsbetiae_contig6261.14868.1 vs. uniprot
Match: A0A6A4E9V0_9STRA (Tyrosyl-DNA phosphodiesterase 1 n=4 Tax=Phytophthora TaxID=4783 RepID=A0A6A4E9V0_9STRA)

HSP 1 Score: 61.6 bits (148), Expect = 5.670e-7
Identity = 39/91 (42.86%), Postives = 51/91 (56.04%), Query Frame = 2 
Query:  299 RTLRQHDFRTARVALVPSVPGTRRHRHKGKDAHRYGHMRIRALLSR*KESGAIARLEEGSHKVAIQVSSLASRSPDPTSWLH-ELLESFLP 568
            R L++ DF +ARVALVPSVPG     HKGKD  +YGH+R+R LL        + ++    + +  Q SS+ S       WL  E  ESFLP
Sbjct:  230 RELKRFDFSSARVALVPSVPGY----HKGKDMEKYGHLRVRKLLK-------MYQVPPTDNPLICQFSSMGSLDE---KWLFGEFAESFLP 306
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BLAST of mRNA_L-elsbetiae_contig6261.14868.1 vs. uniprot
Match: A0A835Z5B8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5B8_9STRA)

HSP 1 Score: 60.8 bits (146), Expect = 1.190e-6
Identity = 32/91 (35.16%), Postives = 49/91 (53.85%), Query Frame = 3 
Query:  624 GRLRVLWPSVEAVRASSKGWTSGGSICCNGENMYGGGFKRADMSKYRSNEPAPELK----PVLRRWKRNPSTNRERGAPHIKTFLRYHQVA 884
            G ++++WP+V AVR    GW++G SI  +  N+    +K A ++  R+  P  +L+    P L RW   P   R R  PHIK++ RY   A
Sbjct:  397 GDMKIVWPTVAAVRTCLAGWSAGNSIPASPGNLLAA-YKGAALADARAAAPTRDLRASVAPFLHRWAGAPRRGRARAMPHIKSYCRYFAPA 486
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BLAST of mRNA_L-elsbetiae_contig6261.14868.1 vs. uniprot
Match: A0A833TKC6_PHYIN (Tyrosyl-DNA phosphodiesterase n=1 Tax=Phytophthora infestans TaxID=4787 RepID=A0A833TKC6_PHYIN)

HSP 1 Score: 60.1 bits (144), Expect = 1.740e-6
Identity = 38/89 (42.70%), Postives = 49/89 (55.06%), Query Frame = 2 
Query:  305 LRQHDFRTARVALVPSVPGTRRHRHKGKDAHRYGHMRIRALLSR*KESGAIARLEEGSHKVAIQVSSLASRSPDPTSWLH-ELLESFLP 568
            L++ DF +ARVALVPSVPG     HKGKD  +YGH+R+R LL        + ++    + +  Q SSL S       WL  E  ES LP
Sbjct:  202 LKRFDFSSARVALVPSVPGV----HKGKDMEKYGHLRVRKLLK-------MYKIPPTDNPLICQFSSLGSLDE---KWLFGEFAESLLP 276
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BLAST of mRNA_L-elsbetiae_contig6261.14868.1 vs. uniprot
Match: A0A2P6TZD2_CHLSO (Tyrosyl-DNA phosphodiesterase 1 n=1 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6TZD2_CHLSO)

HSP 1 Score: 60.1 bits (144), Expect = 1.900e-6
Identity = 34/72 (47.22%), Postives = 43/72 (59.72%), Query Frame = 2 
Query:  248 FPGVLILFVPLPFVLGGRT---------LRQHDFRTARVALVPSVPGTRRHRHKGKDAHRYGHMRIRALLSR 436
            F GVL  FV    +LG RT         +  HD++ AR ALVPSVPG  R  H G+D H++GH+R+R LL R
Sbjct:  125 FGGVLFDFVQAT-LLGFRTQAALDLLRCIASHDYKFARAALVPSVPGPDRGHHTGEDMHKWGHLRLRGLLQR 195
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BLAST of mRNA_L-elsbetiae_contig6261.14868.1 vs. uniprot
Match: A0A8K1CIS9_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CIS9_PYTOL)

HSP 1 Score: 58.5 bits (140), Expect = 5.690e-6
Identity = 42/107 (39.25%), Postives = 54/107 (50.47%), Query Frame = 2 
Query:  281 PFVLGGRTLRQHDFRTARVALVPSVPGTRRHRHKGKDAHRYGHMRIRALLSR*KESGAIARLEEGSHKVAIQVSSLASRSPDPTSWLH-ELLESFLPQERERAGPGT 598
            P V   + L + DF TA VAL+PSVPG     H GK  H+YGH+R+RALL    +  A+A      H +  Q SSL S       WL  E   S +P   + A  G+
Sbjct:  221 PVVTFCKELSRFDFSTATVALIPSVPGA----HTGKAMHKYGHLRVRALL----KHFAVA---PSDHPLICQFSSLGSLDE---KWLFGEFAGSLMPGPTQLASGGS 313
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BLAST of mRNA_L-elsbetiae_contig6261.14868.1 vs. uniprot
Match: R7TBX3_CAPTE (Uncharacterized protein (Fragment) n=1 Tax=Capitella teleta TaxID=283909 RepID=R7TBX3_CAPTE)

HSP 1 Score: 56.6 bits (135), Expect = 1.980e-5
Identity = 33/87 (37.93%), Postives = 48/87 (55.17%), Query Frame = 2 
Query:  305 LRQHDFRTARVALVPSVPGTRRHRHKGKDAHRYGHMRIRALLSR*KESGAIARLEEGSHKVAIQVSSLASRSPDPTSWLH-ELLESF 562
            +++HDF TA+V L+ SVPG    RH G   + +GH++++ +L +   S    +       V  Q SS+ S  P P SWL  ELL SF
Sbjct:  140 IKRHDFSTAKVFLIASVPG----RHSGASLNEFGHLKLKKVLRQFGPSSDACK----QWPVLAQFSSIGSLGPTPESWLSSELLTSF 218
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6261.14868.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
D8LE95_ECTSI2.130e-3065.91Tyrosyl-DNA phosphodiesterase n=2 Tax=Ectocarpus T... [more]
A0A225WPR3_9STRA1.800e-743.48Tyrosyl-DNA phosphodiesterase n=1 Tax=Phytophthora... [more]
A0A6A4E9V0_9STRA5.670e-742.86Tyrosyl-DNA phosphodiesterase 1 n=4 Tax=Phytophtho... [more]
A0A835Z5B8_9STRA1.190e-635.16Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A833TKC6_PHYIN1.740e-642.70Tyrosyl-DNA phosphodiesterase n=1 Tax=Phytophthora... [more]
A0A2P6TZD2_CHLSO1.900e-647.22Tyrosyl-DNA phosphodiesterase 1 n=1 Tax=Chlorella ... [more]
A0A8K1CIS9_PYTOL5.690e-639.25Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
R7TBX3_CAPTE1.980e-537.93Uncharacterized protein (Fragment) n=1 Tax=Capitel... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6261contigL-elsbetiae_contig6261:6605..8202 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score65.9
Seed ortholog evalue1.3e-08
Seed eggNOG ortholog2880.D7FIJ8
Preferred nameTDBP1
KEGG koko:K10862
Hectar predicted targeting categorysignal anchor
EggNOG free text desc.3'-tyrosyl-DNA phosphodiesterase activity
EggNOG OGsKOG2031@1,KOG2031@2759
COG Functional cat.V
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03400
Exons2
Model size919
Cds size303
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6261.14868.1prot_L-elsbetiae_contig6261.14868.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6261 6741..7043 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816687.875247-UTR-L-elsbetiae_contig6261:6604..67401622816687.875247-UTR-L-elsbetiae_contig6261:6604..6740Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6261 6605..6740 +
1691683740.8114889-UTR-L-elsbetiae_contig6261:6604..67401691683740.8114889-UTR-L-elsbetiae_contig6261:6604..6740Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6261 6605..6740 +
1622816687.8990335-UTR-L-elsbetiae_contig6261:7043..72981622816687.8990335-UTR-L-elsbetiae_contig6261:7043..7298Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6261 7044..7298 +
1691683740.8366065-UTR-L-elsbetiae_contig6261:7043..72981691683740.8366065-UTR-L-elsbetiae_contig6261:7043..7298Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6261 7044..7298 +
1622816687.9131556-UTR-L-elsbetiae_contig6261:7977..82021622816687.9131556-UTR-L-elsbetiae_contig6261:7977..8202Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6261 7978..8202 +
1691683740.8506205-UTR-L-elsbetiae_contig6261:7977..82021691683740.8506205-UTR-L-elsbetiae_contig6261:7977..8202Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6261 7978..8202 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816687.8859477-CDS-L-elsbetiae_contig6261:6740..70431622816687.8859477-CDS-L-elsbetiae_contig6261:6740..7043Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6261 6741..7043 +
1691683740.825567-CDS-L-elsbetiae_contig6261:6740..70431691683740.825567-CDS-L-elsbetiae_contig6261:6740..7043Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6261 6741..7043 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6261.14868.1

>prot_L-elsbetiae_contig6261.14868.1 ID=prot_L-elsbetiae_contig6261.14868.1|Name=mRNA_L-elsbetiae_contig6261.14868.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=101bp
MNGLGFPSRVPEEPPTSETLPQPLRASNRIASRPNLSFPGVLILFVPLPF
VLGGRTLRQHDFRTARVALVPSVPGTRRHRHKGKDAHRYGHMRIRALLSR
*
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mRNA from alignment at L-elsbetiae_contig6261:6605..8202+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6261.14868.1 ID=mRNA_L-elsbetiae_contig6261.14868.1|Name=mRNA_L-elsbetiae_contig6261.14868.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1598bp|location=Sequence derived from alignment at L-elsbetiae_contig6261:6605..8202+ (Laminarionema elsbetiae ELsaHSoW15)
GGAGCTCTTTGTCGGGAGGCCACAAAAGAAGCGACCACCAACCGCGCGAG
AGATAGCTTACCCCCGTGAACAAGATGGGTGCTGTGTCCACTAAATCCCT
ATCTCTTTCTCACGCCGGACTCTCCCAGTGGCATGGATGAACGGTCTCGG
CTTCCCCAGCAGGGTCCCGGAAGAGCCTCCGACTTCGGAGACACTCCCAC
AGCCACTGCGTGCATCGAATCGCATCGCGTCGCGTCCGAACCTTAGCTTC
CCTGGCGTGTTAATCTTGTTTGTTCCTCTTCCTTTCGTTCTCGGGGGCAG
AACCTTGAGGCAGCACGACTTCCGCACGGCCAGGGTGGCCTTGGTTCCGA
GCGTCCCCGGCACCAGACGCCACAGGCACAAGGGGAAAGACGCGCACAGG
TATGGCCACATGAGAATCCGCGCGCTCCTCTCGCGGTAGAAGGAGAGCGG
GGCGATCGCGAGGCTCGAGGAGGGCAGCCACAAGGTCGCGATCCAGGTGT
CCTCTCTGGCCTCCCGGTCTCCCGACCCGACCTCCTGGCTGCACGAGCTC
CTAGAGTCGTTCTTGCCGCAAGAGCGAGAGAGGGCGGGGCCGGGGACGGG
TCGAGTCTCGCGGCGGCGGCGAAGGCCGGCTGCGGGTGCTGTGGCCGAGC
GTCGAGGCCGTCCGCGCGTCGTCGAAAGGGTGGACATCTGGCGGGTATGT
CTTGCTTTCCGTGTGTGTACGTGTGTACAGCGCGGTTGGATGCGTCAACG
TGGACTCGACTTCGGGGGGGGGGGGGGGGGGGGGGTATTTGTTTTGTTGA
TTGGCGATGTCATGCAGCCCGTTCGTGCTGCCTGCGGAAACAGCATGCAC
GAGCAGCAGTCGGGTAATAGGCTGCTTGCTGCGTTTCGGTTTTTGGTCGG
CTGGCTGACTTGCGGAAAACTTTGTTCACACTTCAAGGTAAACCTTTGCC
CGGGTCTGCCGGGGTCGCGAGTCTTGATCGAAAGCATTTACTCCCAGCGT
TTTCAGAGAGAGTTCGAACAGTAGTCCCGCGCAGCTGTCCACGGCGTCTT
GTGCCGAGGGTCGGAATAACCACCATAGACACCAGTCGGCCGTCGCGGTG
TTGCTCCGGATGAACAGCTTGTGTAGTGTTTGTTCTCTGCCGACATCGAA
GGCACACAAACAACGCTACCGCACACCGCCACATGTCGGTCGGGGCACAA
ACCTTCGCTCGAAACTCATCGCTTTCACACAATACAGTACCACGCACACG
CACAACAAACAACAACACCGCTGCGATCTCTGCCCCGGTCGACGTCTCTC
CCCTGCTCCTCCCGCCGTCTGCTGCTGCTGCTGCTGCTGCTGCTGGCGCT
GGCGCTGGCGCTGGCACTAGCAGATCTATCTGCTGCAATGGCGAGAACAT
GTACGGGGGGGGCTTCAAGAGGGCCGACATGAGCAAGTACAGGTCCAACG
AACCCGCGCCCGAGCTCAAGCCGGTGCTGCGCAGGTGGAAAAGGAATCCG
TCCACCAACCGCGAGAGAGGCGCGCCGCACATCAAGACCTTCTTGCGCTA
CCACCAGGTGGCAATTTAAACGTGGCGCTTGTTCTTCTGAACTCCCGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig6261:6605..8202+

>mRNA_L-elsbetiae_contig6261.14868.1 ID=mRNA_L-elsbetiae_contig6261.14868.1|Name=mRNA_L-elsbetiae_contig6261.14868.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=606bp|location=Sequence derived from alignment at L-elsbetiae_contig6261:6605..8202+ (Laminarionema elsbetiae ELsaHSoW15)
ATGAACGGTCTCGGCTTCCCCAGCAGGGTCCCGGAAGAGCCTCCGACTTC
GGAGACACTCCCACAGCCACTGCGTGCATCGAATCGCATCGCGTCGCGTC
CGAACCTTAGCTTCCCTGGCGTGTTAATCTTGTTTGTTCCTCTTCCTTTC
GTTCTCGGGGGCAGAACCTTGAGGCAGCACGACTTCCGCACGGCCAGGGT
GGCCTTGGTTCCGAGCGTCCCCGGCACCAGACGCCACAGGCACAAGGGGA
AAGACGCGCACAGGTATGGCCACATGAGAATCCGCGCGCTCCTCTCGCGG
TAGATGAACGGTCTCGGCTTCCCCAGCAGGGTCCCGGAAGAGCCTCCGAC
TTCGGAGACACTCCCACAGCCACTGCGTGCATCGAATCGCATCGCGTCGC
GTCCGAACCTTAGCTTCCCTGGCGTGTTAATCTTGTTTGTTCCTCTTCCT
TTCGTTCTCGGGGGCAGAACCTTGAGGCAGCACGACTTCCGCACGGCCAG
GGTGGCCTTGGTTCCGAGCGTCCCCGGCACCAGACGCCACAGGCACAAGG
GGAAAGACGCGCACAGGTATGGCCACATGAGAATCCGCGCGCTCCTCTCG
CGGTAG
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