mRNA_L-elsbetiae_contig6260.14865.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6260.14865.1
Unique NamemRNA_L-elsbetiae_contig6260.14865.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig6260.14865.1 vs. uniprot
Match: D8LM00_ECTSI (Zn(2)-C6 fungal-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LM00_ECTSI)

HSP 1 Score: 89.7 bits (221), Expect = 9.340e-17
Identity = 53/68 (77.94%), Postives = 54/68 (79.41%), Query Frame = 1 
Query:   64 LPGVKGLVSPFPATAAAG------EKPRPKENEDAKQLAVETLLGLKNSQGSKGGAPMDEASAQAMVA 249
            LPGVKGL  P PA AA        EKPR KENEDAKQLAVETLLGLKNSQGSKGG PMDEASAQA+VA
Sbjct:  716 LPGVKGLALP-PAVAAXXXXXXXXEKPRRKENEDAKQLAVETLLGLKNSQGSKGGGPMDEASAQAVVA 782
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BLAST of mRNA_L-elsbetiae_contig6260.14865.1 vs. uniprot
Match: A0A6H5JM19_9PHAE (Zn(2)-C6 fungal-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JM19_9PHAE)

HSP 1 Score: 80.1 bits (196), Expect = 1.930e-13
Identity = 41/44 (93.18%), Postives = 42/44 (95.45%), Query Frame = 1 
Query:  118 EKPRPKENEDAKQLAVETLLGLKNSQGSKGGAPMDEASAQAMVA 249
            EKPR KENEDAKQLAVETLLGLKNSQGSKGG PMDEASAQA+VA
Sbjct:  753 EKPRRKENEDAKQLAVETLLGLKNSQGSKGGGPMDEASAQAVVA 796
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6260.14865.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LM00_ECTSI9.340e-1777.94Zn(2)-C6 fungal-type domain-containing protein (Fr... [more]
A0A6H5JM19_9PHAE1.930e-1393.18Zn(2)-C6 fungal-type domain-containing protein n=1... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6260contigL-elsbetiae_contig6260:485..1467 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size752
Cds size750
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816687.6305437-CDS-L-elsbetiae_contig6260:486..10801622816687.6305437-CDS-L-elsbetiae_contig6260:486..1080Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6260 487..1080 -
1691683740.654105-CDS-L-elsbetiae_contig6260:486..10801691683740.654105-CDS-L-elsbetiae_contig6260:486..1080Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6260 487..1080 -
1622816687.6409078-CDS-L-elsbetiae_contig6260:1311..14671622816687.6409078-CDS-L-elsbetiae_contig6260:1311..1467Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6260 1312..1467 -
1691683740.6638777-CDS-L-elsbetiae_contig6260:1311..14671691683740.6638777-CDS-L-elsbetiae_contig6260:1311..1467Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6260 1312..1467 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6260.14865.1prot_L-elsbetiae_contig6260.14865.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6260 487..1467 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6260.14865.1

>prot_L-elsbetiae_contig6260.14865.1 ID=prot_L-elsbetiae_contig6260.14865.1|Name=mRNA_L-elsbetiae_contig6260.14865.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=250bp
AAAAAAAAAAVAGKPAQGPPSLPGVKGLVSPFPATAAAGEKPRPKENEDA
KQLAVETLLGLKNSQGSKGGAPMDEASAQAMVAAATAAAAAAAAAARDSN
EGSAASAAAVAAALTAKAVAQAVAQAGAGAGSPSLSSSSTDSETPMGFAV
PAVGEEKGPSEPTPGAAAAVPEAAAAAAAAAVSGAEEKPVDVPSAGGAAV
TTQQAAAPDKEAPQAAAQPPAAPVAVAAAPVAAAPVAAPAAPVAATAGPA
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mRNA from alignment at L-elsbetiae_contig6260:485..1467-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6260.14865.1 ID=mRNA_L-elsbetiae_contig6260.14865.1|Name=mRNA_L-elsbetiae_contig6260.14865.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=983bp|location=Sequence derived from alignment at L-elsbetiae_contig6260:485..1467- (Laminarionema elsbetiae ELsaHSoW15)
GCCGCTGCTGCTGCTGCTGCTGCTGCTGCTGTTGCTGGTAAGCCCGCCCA
AGGGCCCCCTTCTCTTCCGGGCGTCAAGGGTTTGGTCTCTCCGTTCCCGG
CCACGGCTGCCGCTGGCGAGAAGCCACGCCCTAAGGAGAACGAGGACGCG
AAGCAGGTGATAATCACTTTTGTGGAGGAGTTTTTCGTGCCACCGCAGCA
GCAGCAGCATGCAGCAGCAGTGGCGAACTGTTTTTGTCGTATTTTTGGAT
CATGTCGAGAGGAGCAAACGTGGTCGTGCGTTGCAAGAATCGATATGTAT
TCACGAAATGAGTGAATCCTCTCCATCGAGTATAAAACCAACCTACGCCT
CTGCCCTCCCCCTCTCTTGCCCCGTCGATAATTCCAGCTTGCGGTTGAAA
CCCTCCTCGGGCTCAAGAACTCGCAAGGCTCCAAGGGCGGAGCACCGATG
GACGAGGCGTCAGCCCAGGCCATGGTCGCAGCCGCCACTGCCGCCGCAGC
GGCGGCAGCGGCCGCCGCCAGAGACTCGAATGAGGGGAGCGCCGCCTCGG
CCGCCGCGGTGGCGGCTGCCCTGACCGCGAAGGCCGTCGCGCAGGCCGTC
GCCCAGGCGGGCGCAGGTGCGGGGTCTCCGTCGCTGTCGTCCTCGTCCAC
GGACAGCGAGACCCCCATGGGCTTCGCCGTGCCCGCGGTGGGAGAAGAAA
AGGGGCCCTCGGAGCCGACACCGGGAGCCGCCGCGGCGGTCCCGGAAGCG
GCGGCAGCGGCGGCGGCGGCGGCGGTCTCGGGAGCCGAGGAGAAGCCCGT
GGACGTCCCTTCAGCCGGCGGTGCCGCGGTAACGACGCAGCAGGCGGCCG
CGCCGGACAAAGAGGCCCCGCAGGCAGCAGCGCAGCCTCCGGCGGCCCCG
GTAGCGGTGGCGGCGGCCCCGGTGGCGGCGGCCCCGGTGGCGGCGCCGGC
GGCCCCGGTAGCGGCGACGGCGGGCCCAGCAGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig6260:485..1467-

>mRNA_L-elsbetiae_contig6260.14865.1 ID=mRNA_L-elsbetiae_contig6260.14865.1|Name=mRNA_L-elsbetiae_contig6260.14865.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1500bp|location=Sequence derived from alignment at L-elsbetiae_contig6260:485..1467- (Laminarionema elsbetiae ELsaHSoW15)
GCCGCTGCTGCTGCTGCTGCTGCTGCTGCTGTTGCTGGTAAGCCCGCCCA
AGGGCCCCCTTCTCTTCCGGGCGTCAAGGGTTTGGTCTCTCCGTTCCCGG
CCACGGCTGCCGCTGGCGAGAAGCCACGCCCTAAGGAGAACGAGGACGCG
AAGCAGGCCGCTGCTGCTGCTGCTGCTGCTGCTGCTGTTGCTGGTAAGCC
CGCCCAAGGGCCCCCTTCTCTTCCGGGCGTCAAGGGTTTGGTCTCTCCGT
TCCCGGCCACGGCTGCCGCTGGCGAGAAGCCACGCCCTAAGGAGAACGAG
GACGCGAAGCAGCTTGCGGTTGAAACCCTCCTCGGGCTCAAGAACTCGCA
AGGCTCCAAGGGCGGAGCACCGATGGACGAGGCGTCAGCCCAGGCCATGG
TCGCAGCCGCCACTGCCGCCGCAGCGGCGGCAGCGGCCGCCGCCAGAGAC
TCGAATGAGGGGAGCGCCGCCTCGGCCGCCGCGGTGGCGGCTGCCCTGAC
CGCGAAGGCCGTCGCGCAGGCCGTCGCCCAGGCGGGCGCAGGTGCGGGGT
CTCCGTCGCTGTCGTCCTCGTCCACGGACAGCGAGACCCCCATGGGCTTC
GCCGTGCCCGCGGTGGGAGAAGAAAAGGGGCCCTCGGAGCCGACACCGGG
AGCCGCCGCGGCGGTCCCGGAAGCGGCGGCAGCGGCGGCGGCGGCGGCGG
TCTCGGGAGCCGAGGAGAAGCCCGTGGACGTCCCTTCAGCCGGCGGTGCC
GCGGTAACGACGCAGCAGGCGGCCGCGCCGGACAAAGAGGCCCCGCAGGC
AGCAGCGCAGCCTCCGGCGGCCCCGGTAGCGGTGGCGGCGGCCCCGGTGG
CGGCGGCCCCGGTGGCGGCGCCGGCGGCCCCGGTAGCGGCGACGGCGGGC
CCAGCACTTGCGGTTGAAACCCTCCTCGGGCTCAAGAACTCGCAAGGCTC
CAAGGGCGGAGCACCGATGGACGAGGCGTCAGCCCAGGCCATGGTCGCAG
CCGCCACTGCCGCCGCAGCGGCGGCAGCGGCCGCCGCCAGAGACTCGAAT
GAGGGGAGCGCCGCCTCGGCCGCCGCGGTGGCGGCTGCCCTGACCGCGAA
GGCCGTCGCGCAGGCCGTCGCCCAGGCGGGCGCAGGTGCGGGGTCTCCGT
CGCTGTCGTCCTCGTCCACGGACAGCGAGACCCCCATGGGCTTCGCCGTG
CCCGCGGTGGGAGAAGAAAAGGGGCCCTCGGAGCCGACACCGGGAGCCGC
CGCGGCGGTCCCGGAAGCGGCGGCAGCGGCGGCGGCGGCGGCGGTCTCGG
GAGCCGAGGAGAAGCCCGTGGACGTCCCTTCAGCCGGCGGTGCCGCGGTA
ACGACGCAGCAGGCGGCCGCGCCGGACAAAGAGGCCCCGCAGGCAGCAGC
GCAGCCTCCGGCGGCCCCGGTAGCGGTGGCGGCGGCCCCGGTGGCGGCGG
CCCCGGTGGCGGCGCCGGCGGCCCCGGTAGCGGCGACGGCGGGCCCAGCA
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