mRNA_L-elsbetiae_contig6260.14864.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6260.14864.1
Unique NamemRNA_L-elsbetiae_contig6260.14864.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig6260.14864.1 vs. uniprot
Match: A0A6H5JM19_9PHAE (Zn(2)-C6 fungal-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JM19_9PHAE)

HSP 1 Score: 58.2 bits (139), Expect = 1.960e-7
Identity = 48/77 (62.34%), Postives = 54/77 (70.13%), Query Frame = -3 
Query:  122 GAQNWAPVHGGPEEAASEAVAGGAAVPXXSPAAPAG-----AASGCVDGQAA-VAMDVSGSGSSPA-SQSRAVASSV 331
            G QNWAPVHGGPEEAA+EA +G +A P  +  A  G     AA+GCVDGQA  V +DVSG  SSPA SQ  AVASSV
Sbjct: 1017 GVQNWAPVHGGPEEAAAEA-SGESAQPAATATAGPGTTAPPAAAGCVDGQAGGVPVDVSGQSSSPAASQIPAVASSV 1092
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6260.14864.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JM19_9PHAE1.960e-762.34Zn(2)-C6 fungal-type domain-containing protein n=1... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6260contigL-elsbetiae_contig6260:111..466 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size357
Cds size354
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816687.6756704-CDS-L-elsbetiae_contig6260:110..4641622816687.6756704-CDS-L-elsbetiae_contig6260:110..464Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6260 111..464 +
1691683740.675315-CDS-L-elsbetiae_contig6260:110..4641691683740.675315-CDS-L-elsbetiae_contig6260:110..464Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6260 111..464 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6260.14864.1prot_L-elsbetiae_contig6260.14864.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6260 111..464 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6260.14864.1

>prot_L-elsbetiae_contig6260.14864.1 ID=prot_L-elsbetiae_contig6260.14864.1|Name=mRNA_L-elsbetiae_contig6260.14864.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=118bp
TPATQPHGHHRTISRAETRRAASDERQHEGTRPCTIHTYITQTTPPPGFD
WPGRSPIPKHPLPPLPAHQHSLTPRRPAPPETVVARQRLQRQPRTQLPPA
HRAPAPSSARPPVLLPEP
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mRNA from alignment at L-elsbetiae_contig6260:111..466+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6260.14864.1 ID=mRNA_L-elsbetiae_contig6260.14864.1|Name=mRNA_L-elsbetiae_contig6260.14864.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=356bp|location=Sequence derived from alignment at L-elsbetiae_contig6260:111..466+ (Laminarionema elsbetiae ELsaHSoW15)
ACACCGGCAACGCAACCACACGGCCACCACCGTACCATAAGTCGAGCTGA
GACAAGGCGAGCAGCAAGCGATGAGCGGCAGCACGAAGGCACACGGCCGT
GCACCATACACACATACATCACACAGACGACGCCACCGCCCGGCTTTGAC
TGGCCGGGGAGGAGCCCGATCCCGAAACATCCATTGCCACCGCTGCCTGC
CCATCAACACAGCCTGACGCCGCGCCGGCCGGCGCCGCCGGAGACGGTGG
TGGCACGGCAGCGCCTCCAGCGACAGCCTCGGACGCAGCTTCCTCCGGCC
CACCGTGCACCGGCGCCCAGTTCTGCGCGCCCGCCGGTGCTGCTGCCAGA
GCCCGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig6260:111..466+

>mRNA_L-elsbetiae_contig6260.14864.1 ID=mRNA_L-elsbetiae_contig6260.14864.1|Name=mRNA_L-elsbetiae_contig6260.14864.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=708bp|location=Sequence derived from alignment at L-elsbetiae_contig6260:111..466+ (Laminarionema elsbetiae ELsaHSoW15)
ACACCGGCAACGCAACCACACGGCCACCACCGTACCATAAGTCGAGCTGA
GACAAGGCGAGCAGCAAGCGATGAGCGGCAGCACGAAGGCACACGGCCGT
GCACCATACACACATACATCACACAGACGACGCCACCGCCCGGCTTTGAC
TGGCCGGGGAGGAGCCCGATCCCGAAACATCCATTGCCACCGCTGCCTGC
CCATCAACACAGCCTGACGCCGCGCCGGCCGGCGCCGCCGGAGACGGTGG
TGGCACGGCAGCGCCTCCAGCGACAGCCTCGGACGCAGCTTCCTCCGGCC
CACCGTGCACCGGCGCCCAGTTCTGCGCGCCCGCCGGTGCTGCTGCCAGA
GCCCACACCGGCAACGCAACCACACGGCCACCACCGTACCATAAGTCGAG
CTGAGACAAGGCGAGCAGCAAGCGATGAGCGGCAGCACGAAGGCACACGG
CCGTGCACCATACACACATACATCACACAGACGACGCCACCGCCCGGCTT
TGACTGGCCGGGGAGGAGCCCGATCCCGAAACATCCATTGCCACCGCTGC
CTGCCCATCAACACAGCCTGACGCCGCGCCGGCCGGCGCCGCCGGAGACG
GTGGTGGCACGGCAGCGCCTCCAGCGACAGCCTCGGACGCAGCTTCCTCC
GGCCCACCGTGCACCGGCGCCCAGTTCTGCGCGCCCGCCGGTGCTGCTGC
CAGAGCCC
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