mRNA_L-elsbetiae_contig626.14862.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig626.14862.1
Unique NamemRNA_L-elsbetiae_contig626.14862.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig626.14862.1 vs. uniprot
Match: D8LJA9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJA9_ECTSI)

HSP 1 Score: 368 bits (944), Expect = 7.330e-122
Identity = 207/287 (72.13%), Postives = 230/287 (80.14%), Query Frame = 2 
Query:    2 GIALVLGCGLVAFGPSLMLWVVVLGKRPALVIIGLIGAFFWLASMAAASVLWTIFPAAQDGWVLTIITGVGLQSFGRIALAKAYVKTEAVVNAAAADAAPXXXXXXXXXXXXRRGDGARGGGDSGXARIGRRXXXXGDESGDRQDQSGLLKLNGVSSSIAAGVGWGLIHAVILVGTALSKHMGPGAAFSPSCPHVPTVIVSALSAQAFVVLDLLLMAAAFAAARTGNAGLMCYSFGLHFLAALSTGLNFVEGGCAVSLPLLYAVVVISAIALARCGPLRSAMTRLSR 862
            G+ LV GC L+AFGPS+MLWVVV+GKRPALVIIGL+GAFFWLASMAAASVLWTI PAAQD W+L++ITGV L  FGR+ALAK YVKTEAV+N AAA AAP             R  GA G   SG    GR     GD     ++ SGLL+LNGVSSSIAAGVGWGLIHAVI+VGTALSKHMGPGAAFSPSCPHVP+VIVSALSAQAFVVLDLLLMAAAFAAAR+G+AGLM +SFGLHF AAL+TG NF+EGGC  SLPLLY VV ++AIAL R  PL+SAM RL R
Sbjct:    2 GLVLVAGCSLIAFGPSIMLWVVVVGKRPALVIIGLVGAFFWLASMAAASVLWTIVPAAQDAWLLSMITGVVLHGFGRLALAKVYVKTEAVINEAAAHAAPASNAHGSSG----RYGGALGAEGSGGVGEGRGERKTGDVPDQPEESSGLLRLNGVSSSIAAGVGWGLIHAVIMVGTALSKHMGPGAAFSPSCPHVPSVIVSALSAQAFVVLDLLLMAAAFAAARSGDAGLMSFSFGLHFAAALTTGFNFIEGGCTASLPLLYGVVALAAIALTRYRPLKSAMIRLRR 284
[Close]
BLAST of mRNA_L-elsbetiae_contig626.14862.1 vs. uniprot
Match: W7TG16_9STRA (Protein binding protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TG16_9STRA)

HSP 1 Score: 110 bits (275), Expect = 6.380e-24
Identity = 84/269 (31.23%), Postives = 127/269 (47.21%), Query Frame = 2 
Query:   20 GCGLVAFGPSLMLWVVVLGKRPALVIIGLIGAFFWLASMAAASVLWTIFPAAQDGWVLTIITGVGLQSFGRIALAKAYVKTEAVVNAAAADAAPXXXXXXXXXXXXRRGDGARGGGDSGXARIGRRXXXXGDESGDRQDQSGLLKLNGVSSSIAAGVGWGLIHAVILVGTAL-SKHMGPGAAFSPSCPHVPTVIVSALSAQAFVVLDLLLMAAAFAAARTGNAGLMCYSFGLHFLAALSTGLNFVEGGCAVSLPLLYAVVVISAIALAR 823
            G GL+ F P   ++++V+ +RP LVII + GAF +L ++  +S LW +F   +    + ++ GV  Q   R  L + Y +TE ++ +A                                                       + LN ++SS+AAG G+GL+HAV++ G+ L S +  PG  F+PSC   P V+V AL A AF ++DL  MA  F   R      M   F +H  A+  T LN VE GC +SLPL+Y V+V + +   R
Sbjct:    9 GAGLIVFSPISCVFILVVTRRPELVIIAISGAFAYLVALLLSSALWAMFGPVKQTAAIMVVLGVLCQVVMRAVLYRLYHRTEILIKSA-------------------------------------------------NHPVLHMPLNDITSSLAAGTGYGLMHAVMIFGSVLASGNSDPGVLFAPSCTRTPLVVVLALLALAFTMMDLSFMALTFLYLRRRKCFRMGVIFLMHSAASGLTILNDVENGCTMSLPLVYVVMVATVLVTFR 228
[Close]
BLAST of mRNA_L-elsbetiae_contig626.14862.1 vs. uniprot
Match: H3GHV0_PHYRM (Uncharacterized protein n=15 Tax=Phytophthora TaxID=4783 RepID=H3GHV0_PHYRM)

HSP 1 Score: 103 bits (257), Expect = 2.260e-21
Identity = 87/276 (31.52%), Postives = 120/276 (43.48%), Query Frame = 2 
Query:   11 LVLGCGLVAFGPSLMLWVVVLGKRPALVIIGLIGAFFWLASMAAASVLWTIFPAAQDGWVLTIITGVGLQSFGRIALAKAYVKTEAVVNAAAADAAPXXXXXXXXXXXXRRGDGARGGGDSGXARIGRRXXXXGDESGDRQDQSGLLKLNGVSSSIAAGVGWGLIHAVILVGTALSKHMGP-GAAFSPSCPHVPTVIVSALSAQAFVVLDLLLMAAAFAAARTGNAGLMCYSFGLHFLAALSTGLNFVEGGCAVSLPLLYAVVVISAIALARCGPL 835
            L+ GC LV FGP   L+ VV+ KR  LVI+ L GAF WL ++   + LW I P  +     T+  GV +Q   R+     Y +TEA V                                                       S  L LN V+SS+A GVG+ ++HA+++ G+ +    G  GAAFS SC  +P V  +A+S  A   LD+ LM  AF   R  +A  +   F +H   ALS   N    GC +S+P+ YA       ALA  G +
Sbjct:   12 LLFGCILVGFGPLAALFFVVVAKRAQLVILALSGAFVWLVAILVTASLWQIIPPLKTSLSATVPVGVVVQEAFRLLFFHLYTRTEAAVKKVTT-------------------------------------------------ASHQLPLNDVTSSLAGGVGFSVMHALLMFGSLVGSSTGSRGAAFSASCESIPLVFSAAISTLALTALDVALMVVAFDGYRKRSAMAVGAVFVIHMGVALSALANMNTNGCYISIPVHYA-----GAALASAGAM 233
[Close]
BLAST of mRNA_L-elsbetiae_contig626.14862.1 vs. uniprot
Match: A0A484DSN2_BRELC (Uncharacterized protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484DSN2_BRELC)

HSP 1 Score: 103 bits (256), Expect = 3.080e-21
Identity = 82/258 (31.78%), Postives = 113/258 (43.80%), Query Frame = 2 
Query:   20 GCGLVAFGPSLMLWVVVLGKRPALVIIGLIGAFFWLASMAAASVLWTIFPAAQDGWVLTIITGVGLQSFGRIALAKAYVKTEAVVNAAAADAAPXXXXXXXXXXXXRRGDGARGGGDSGXARIGRRXXXXGDESGDRQDQSGLLKLNGVSSSIAAGVGWGLIHAVILVGTALSKHMG-PGAAFSPSCPHVPTVIVSALSAQAFVVLDLLLMAAAFAAARTGNAGLMCYSFGLHFLAALSTGLNFVEGGCAVSLPLLYA 790
            GC LV FGP   ++  ++ KR  LVII L GAF WL ++   + LW I PA +     T+  GV +Q   R+     Y +TE  V                                                       S  L LN V+SS+A GVG+ L+HA+++ G+ +    G  GAAFS SCP +P V  +ALS  A   LD+ LM  AF   R  +A ++     +H   ALS   N    GC +S+P+ YA
Sbjct:   15 GCILVGFGPLAAVFFTIIAKRAQLVIISLSGAFVWLIAILVTATLWQIIPALKTSLSATVPVGVVVQEAFRVLFFYLYTRTELAVKRVTTS-------------------------------------------------SHQLPLNDVTSSLAGGVGFSLMHALLMFGSLMGSSTGLRGAAFSNSCPAIPLVFSAALSTLALTALDVSLMVLAFDGYRKRSALIVSAVIIIHMGIALSALANMDTNGCYISIPVHYA 223
[Close]
BLAST of mRNA_L-elsbetiae_contig626.14862.1 vs. uniprot
Match: A0A2D4BUP9_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BUP9_PYTIN)

HSP 1 Score: 101 bits (251), Expect = 1.430e-20
Identity = 83/268 (30.97%), Postives = 116/268 (43.28%), Query Frame = 2 
Query:   20 GCGLVAFGPSLMLWVVVLGKRPALVIIGLIGAFFWLASMAAASVLWTIFPAAQDGWVLTIITGVGLQSFGRIALAKAYVKTEAVVNAAAADAAPXXXXXXXXXXXXRRGDGARGGGDSGXARIGRRXXXXGDESGDRQDQSGLLKLNGVSSSIAAGVGWGLIHAVILVGTALSKHMGP-GAAFSPSCPHVPTVIVSALSAQAFVVLDLLLMAAAFAAARTGNAGLMCYSFGLHFLAALSTGLNFVEGGCAVSLPLLYAVVVISAIALA 820
            GC L AFGP   L+ VV+ KR  LVI+ L GAF WL S+   + +W I P  +     TI   V LQ   R      Y +TE  V                                                       +  L LN ++SS+A GVG+ L+H++++ G+ ++   G  GAAFS SC  +P ++  ALS  A  V+D+ LM  AF   R  NA L+     +H   ALS   N    GC VS+P+ YA  +++    A
Sbjct:   15 GCILTAFGPLASLFFVVIAKRAQLVILALSGAFLWLISILVTATIWRIIPPLKTSLEATIPLSVVLQEVFRYLFFVMYTRTEQAVQKVTT-------------------------------------------------ATHQLPLNDITSSLAGGVGFSLMHSLMMYGSVVASSTGSRGAAFSSSCESIPLILSGALSTLALTVMDVALMVIAFQGYRKMNAMLIGLVALIHLGVALSALANKSTNGCMVSIPIHYAGALLAVAGAA 233
[Close]
BLAST of mRNA_L-elsbetiae_contig626.14862.1 vs. uniprot
Match: A0A3R7KS73_9STRA (Uncharacterized protein n=5 Tax=Phytophthora TaxID=4783 RepID=A0A3R7KS73_9STRA)

HSP 1 Score: 99.8 bits (247), Expect = 5.270e-20
Identity = 81/261 (31.03%), Postives = 114/261 (43.68%), Query Frame = 2 
Query:   11 LVLGCGLVAFGPSLMLWVVVLGKRPALVIIGLIGAFFWLASMAAASVLWTIFPAAQDGWVLTIITGVGLQSFGRIALAKAYVKTEAVVNAAAADAAPXXXXXXXXXXXXRRGDGARGGGDSGXARIGRRXXXXGDESGDRQDQSGLLKLNGVSSSIAAGVGWGLIHAVILVGTALSKHMGP-GAAFSPSCPHVPTVIVSALSAQAFVVLDLLLMAAAFAAARTGNAGLMCYSFGLHFLAALSTGLNFVEGGCAVSLPLLYA 790
            L++GC LV FGP   L+ VV+ KR  LVII L GAF WL ++   + LW I P  +     T+  GV +Q   R+     Y +TE  V                                                       S  L LN ++SS+A GVG+ ++HA+++ G+      G  GAAFS SC  +P +  +A+S  A   LD+ LM  AF   R  +A  +   F +H   ALS   N    GC +S+P+ YA
Sbjct:   12 LLIGCILVGFGPLASLFFVVIAKRAQLVIIALSGAFTWLVAILVTATLWQIIPPLKTSLSATVPVGVVVQEGFRMLFFYLYTRTELAVKKVTTS-------------------------------------------------SHQLPLNDITSSLAGGVGFSVMHALMMFGSLAGSSTGSRGAAFSSSCESIPLIFSAAISTLALTALDVALMVVAFDGYRKRSALAVGAVFVIHMGVALSGLANMDTNGCYISIPVHYA 223
[Close]
BLAST of mRNA_L-elsbetiae_contig626.14862.1 vs. uniprot
Match: K3X4S5_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X4S5_GLOUD)

HSP 1 Score: 99.4 bits (246), Expect = 6.750e-20
Identity = 82/268 (30.60%), Postives = 118/268 (44.03%), Query Frame = 2 
Query:   20 GCGLVAFGPSLMLWVVVLGKRPALVIIGLIGAFFWLASMAAASVLWTIFPAAQDGWVLTIITGVGLQSFGRIALAKAYVKTEAVVNAAAADAAPXXXXXXXXXXXXRRGDGARGGGDSGXARIGRRXXXXGDESGDRQDQSGLLKLNGVSSSIAAGVGWGLIHAVILVGTALSKHMGP-GAAFSPSCPHVPTVIVSALSAQAFVVLDLLLMAAAFAAARTGNAGLMCYSFGLHFLAALSTGLNFVEGGCAVSLPLLYAVVVISAIALA 820
            GC L AFGP   L+ VV+ KR  LVII L GAF WL ++   + LW I P  +D    TI  GV +Q   R      Y +TE  V+      +                                                    LN ++SS+A G+G+ L+HA+++ G+ +    G  GAAF+ SC  VP +  +ALS  A  ++D+ LM  AF   R  +   +   F +H   ALS   N    GCAV++PL +A  +++  A A
Sbjct:   15 GCILTAFGPLAALFFVVVAKRAQLVIIALSGAFTWLVAILVTATLWRIIPPLKDSIEATIPVGVVIQEAFRYVFFVLYTRTERAVHKVTTSPSQ-------------------------------------------------FPLNDITSSLAGGLGFSLMHALMMYGSLVGSSTGSRGAAFTKSCESVPLIFAAALSTLALTLMDVALMIVAFDGYRKKSFLAIGTVFVIHLGVALSALANQKTNGCAVAIPLHFAGALVATGAAA 233
[Close]
BLAST of mRNA_L-elsbetiae_contig626.14862.1 vs. uniprot
Match: A0A3M6VQE8_9STRA (Uncharacterized protein n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VQE8_9STRA)

HSP 1 Score: 99.0 bits (245), Expect = 9.390e-20
Identity = 78/262 (29.77%), Postives = 115/262 (43.89%), Query Frame = 2 
Query:   20 GCGLVAFGPSLMLWVVVLGKRPALVIIGLIGAFFWLASMAAASVLWTIFPAAQDGWVLTIITGVGLQSFGRIALAKAYVKTEAVVNAAAADAAPXXXXXXXXXXXXRRGDGARGGGDSGXARIGRRXXXXGDESGDRQDQSGLLKLNGVSSSIAAGVGWGLIHAVILVGTALSKHMGP-GAAFSPSCPHVPTVIVSALSAQAFVVLDLLLMAAAFAAARTGNAGLMCYSFGLHFLAALSTGLNFVEGGCAVSLPLLYAVVVI 802
            GC L+ FGP   L+ +V+ KR  LVII L GAF WL ++   + LW + P  +     TI  GV +Q   R+     Y  TE  V                                                          L LN ++SS+A GVG+ L+H++++ G+ L    G  GAA+S SC ++P +  +A+S  A  ++D+ LM  AF   R  +  L+   FG+H   ALS   N    GC +S+P+ YA  V+
Sbjct:   15 GCILLGFGPLASLFFIVVAKRAQLVIISLSGAFIWLVAILVTASLWHLIPPLKTSLAATIPLGVIVQEVFRLLFFYLYTHTELAVKRVTTSCHQ-------------------------------------------------LPLNDITSSLAGGVGFALMHSLLMFGSLLGSSTGSRGAAYSTSCDNIPLIFSAAISTLALTIIDVGLMIIAFDGYRKRSVLLIGTVFGIHMGVALSALANLDTNGCFISIPVHYAGAVL 227
[Close]
BLAST of mRNA_L-elsbetiae_contig626.14862.1 vs. uniprot
Match: A0A0P1A6Q5_PLAHL (Gammasecretase subunit aph n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1A6Q5_PLAHL)

HSP 1 Score: 99.0 bits (245), Expect = 9.390e-20
Identity = 77/263 (29.28%), Postives = 113/263 (42.97%), Query Frame = 2 
Query:   20 GCGLVAFGPSLMLWVVVLGKRPALVIIGLIGAFFWLASMAAASVLWTIFPAAQDGWVLTIITGVGLQSFGRIALAKAYVKTEAVVNAAAADAAPXXXXXXXXXXXXRRGDGARGGGDSGXARIGRRXXXXGDESGDRQDQSGLLKLNGVSSSIAAGVGWGLIHAVILVGTALSKHMGP-GAAFSPSCPHVPTVIVSALSAQAFVVLDLLLMAAAFAAARTGNAGLMCYSFGLHFLAALSTGLNFVEGGCAVSLPLLYAVVVIS 805
            GC L+ FGP   L+  V+ KR  LVI+ L  AF WL ++   + LW + P  +     T+  GV +Q   R+     Y +TE  V                                                       S  L LN ++SS+A GVG+  +HA+++ G+ +    G  GAAFS SC  +P +  +ALS  A   LD+ LM  AF   R  +  ++   FG+H   ALS   N    GC +S+P+ YA  V++
Sbjct:   15 GCILIGFGPLAALFFFVVAKRAQLVILALSAAFVWLVAILVTATLWHLIPPLKTSLSATVPVGVVVQEAFRMLFFYLYTRTEKAVKRVTTS-------------------------------------------------SHQLPLNDITSSLAGGVGFSAMHALLMFGSLVGSSTGSRGAAFSSSCESIPLIFSAALSTLALTALDVALMVVAFDGYRKRSVLIITVVFGIHMGVALSALANMDTNGCYISIPVHYAGAVLA 228
[Close]
BLAST of mRNA_L-elsbetiae_contig626.14862.1 vs. uniprot
Match: A0A8K1C7Q9_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C7Q9_PYTOL)

HSP 1 Score: 98.6 bits (244), Expect = 1.250e-19
Identity = 78/263 (29.66%), Postives = 114/263 (43.35%), Query Frame = 2 
Query:   20 GCGLVAFGPSLMLWVVVLGKRPALVIIGLIGAFFWLASMAAASVLWTIFPAAQDGWVLTIITGVGLQSFGRIALAKAYVKTEAVVNAAAADAAPXXXXXXXXXXXXRRGDGARGGGDSGXARIGRRXXXXGDESGDRQDQSGLLKLNGVSSSIAAGVGWGLIHAVILVGTALSKHMGP-GAAFSPSCPHVPTVIVSALSAQAFVVLDLLLMAAAFAAARTGNAGLMCYSFGLHFLAALSTGLNFVEGGCAVSLPLLYAVVVIS 805
            GC L+AFGP   L+ +V+ KR  L II L GAF WL S+  ++ LW I P  +     TI+  V +Q   R      Y +TE  V                                                       +  L LN ++SS+A GVG+ ++H+V++ G+ ++   G  GAAFSPSC  +P +   A S  A  ++D+ LM  AF   R  N  L+     LH   ALS   N    GC +++P+ Y   ++S
Sbjct:   15 GCILIAFGPLTALFFMVVSKRAQLTIIALSGAFVWLVSILISATLWMIIPPLKSSIEATIVISVIIQEVFRFVFFHFYTRTELAVQKVTT-------------------------------------------------ATHQLPLNDITSSLAGGVGFSIMHSVMMYGSVVASSTGSRGAAFSPSCESIPLIFSGAFSTLALTIMDVALMIIAFHGYRNRNFVLIGGVGVLHLGVALSALANQNTNGCTIAIPIHYVGALLS 228
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig626.14862.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LJA9_ECTSI7.330e-12272.13Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
W7TG16_9STRA6.380e-2431.23Protein binding protein n=1 Tax=Nannochloropsis ga... [more]
H3GHV0_PHYRM2.260e-2131.52Uncharacterized protein n=15 Tax=Phytophthora TaxI... [more]
A0A484DSN2_BRELC3.080e-2131.78Uncharacterized protein n=1 Tax=Bremia lactucae Ta... [more]
A0A2D4BUP9_PYTIN1.430e-2030.97Uncharacterized protein n=1 Tax=Pythium insidiosum... [more]
A0A3R7KS73_9STRA5.270e-2031.03Uncharacterized protein n=5 Tax=Phytophthora TaxID... [more]
K3X4S5_GLOUD6.750e-2030.60Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A3M6VQE8_9STRA9.390e-2029.77Uncharacterized protein n=1 Tax=Peronospora effusa... [more]
A0A0P1A6Q5_PLAHL9.390e-2029.28Gammasecretase subunit aph n=1 Tax=Plasmopara hals... [more]
A0A8K1C7Q9_PYTOL1.250e-1929.66Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig626contigL-elsbetiae_contig626:19580..25415 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score343.2
Seed ortholog evalue1.1e-91
Seed eggNOG ortholog2880.D8LJA9
Hectar predicted targeting categorysignal peptide
EggNOG free text desc.Aph-1 protein
EggNOG OGs2CYZB@1,2S7DU@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons6
Model size1578
Cds size813
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig626.14862.1prot_L-elsbetiae_contig626.14862.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig626 19632..24702 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816687.4125264-UTR-L-elsbetiae_contig626:19579..196311622816687.4125264-UTR-L-elsbetiae_contig626:19579..19631Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig626 19580..19631 +
1691683740.4926739-UTR-L-elsbetiae_contig626:19579..196311691683740.4926739-UTR-L-elsbetiae_contig626:19579..19631Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig626 19580..19631 +
1622816687.4956396-UTR-L-elsbetiae_contig626:24702..254151622816687.4956396-UTR-L-elsbetiae_contig626:24702..25415Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig626 24703..25415 +
1691683740.5780413-UTR-L-elsbetiae_contig626:24702..254151691683740.5780413-UTR-L-elsbetiae_contig626:24702..25415Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig626 24703..25415 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816687.4245496-CDS-L-elsbetiae_contig626:19631..196901622816687.4245496-CDS-L-elsbetiae_contig626:19631..19690Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig626 19632..19690 +
1691683740.5055854-CDS-L-elsbetiae_contig626:19631..196901691683740.5055854-CDS-L-elsbetiae_contig626:19631..19690Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig626 19632..19690 +
1622816687.4372087-CDS-L-elsbetiae_contig626:20746..208131622816687.4372087-CDS-L-elsbetiae_contig626:20746..20813Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig626 20747..20813 +
1691683740.5143232-CDS-L-elsbetiae_contig626:20746..208131691683740.5143232-CDS-L-elsbetiae_contig626:20746..20813Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig626 20747..20813 +
1622816687.4480612-CDS-L-elsbetiae_contig626:21549..218501622816687.4480612-CDS-L-elsbetiae_contig626:21549..21850Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig626 21550..21850 +
1691683740.5247843-CDS-L-elsbetiae_contig626:21549..218501691683740.5247843-CDS-L-elsbetiae_contig626:21549..21850Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig626 21550..21850 +
1622816687.4608665-CDS-L-elsbetiae_contig626:22362..224881622816687.4608665-CDS-L-elsbetiae_contig626:22362..22488Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig626 22363..22488 +
1691683740.5358918-CDS-L-elsbetiae_contig626:22362..224881691683740.5358918-CDS-L-elsbetiae_contig626:22362..22488Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig626 22363..22488 +
1622816687.471456-CDS-L-elsbetiae_contig626:23401..235291622816687.471456-CDS-L-elsbetiae_contig626:23401..23529Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig626 23402..23529 +
1691683740.5465696-CDS-L-elsbetiae_contig626:23401..235291691683740.5465696-CDS-L-elsbetiae_contig626:23401..23529Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig626 23402..23529 +
1622816687.483247-CDS-L-elsbetiae_contig626:24570..247021622816687.483247-CDS-L-elsbetiae_contig626:24570..24702Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig626 24571..24702 +
1691683740.5651982-CDS-L-elsbetiae_contig626:24570..247021691683740.5651982-CDS-L-elsbetiae_contig626:24570..24702Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig626 24571..24702 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig626.14862.1

>prot_L-elsbetiae_contig626.14862.1 ID=prot_L-elsbetiae_contig626.14862.1|Name=mRNA_L-elsbetiae_contig626.14862.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=271bp
MLWVVVLGKRPALVIIGLIGAFFWLASMAAASVLWTIFPAAQDGWVLTII
TGVGLQSFGRIALAKAYVKTEAVVNAAAADAAPTSDAGGSGGSGGRRGDG
ARGGGDSGGARIGRRRRGDGDESGDRQDQSGLLKLNGVSSSIAAGVGWGL
IHAVILVGTALSKHMGPGAAFSPSCPHVPTVIVSALSAQAFVVLDLLLMA
AAFAAARTGNAGLMCYSFGLHFLAALSTGLNFVEGGCAVSLPLLYAVVVI
SAIALARCGPLRSAMTRLSR*
back to top

mRNA from alignment at L-elsbetiae_contig626:19580..25415+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig626.14862.1 ID=mRNA_L-elsbetiae_contig626.14862.1|Name=mRNA_L-elsbetiae_contig626.14862.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=5836bp|location=Sequence derived from alignment at L-elsbetiae_contig626:19580..25415+ (Laminarionema elsbetiae ELsaHSoW15)
GGGGATTGCGCTTGTGCTGGGCTGCGGCCTTGTCGCCTTTGGTCCTTCGT
TGATGCTGTGGGTGGTGGTTCTCGGCAAACGACCGGCTCTTGTCATCATC
GGCCTCATCGGGTGAGTGTTCTCGCGGAACCCCCCCTTCGCTGCATACGG
GATGGCCATCTAGGTATGGTAGCTGTGGTTGTTCGAATTATCTACACTTG
TTAAAACAGCAGGCGCACGACGAGGTGATTTGGCCTTCAAAGCCAATAGA
AGAGGTACATGCCCTCTTCGTAAAATACTCGAAGCTCCACTATTTAGTCT
CCTAAATCAACAAGATCTTGTACTCGTATCTACATAAGACTAGATAGATA
GTCCTACAATAGGCAGATTGTCTTAGACATCGAATGGATGCCGTATACAC
TTCTACATAAGACTAGATAGATAGTCCTACAATAGGCAGATTGTCTTAGA
CATCGAATGGATGCCGTATACACTTCTGCATATATAGACTAGATTGGTAT
CGGCTGCAGTCTTGTACCGTACATTAAAAAATATCGAAGACTCCTTACAA
GCTCACCAACAAGTATATACTATGCAGCTATGTATGCAGTGCACAAGTAT
CAAACAAACAGGGGTGGAGTGCTTAGCGGGCAATCTGCACAACCATCGCG
CTGCTGTTAATTGCGAGTTCACACCCCGGGGTCGGGGTTGTATGTACAGC
AGTCGCCGTTAAAATACATCTTCTCAAAACACTACTGTAGCTCCCCTGCT
ACATGTTGCTTGATGGTGCTGTGTTTGTTGTCTCAAGGTGTTTGGTGCGT
GGATGCTCAACCTCGCCAAATACGCGATGCTCATGGGTAGATTGTAACCC
AGTCTTGACAAGTATCTTGAGCTCTCTTCTCAACAGATTATCACTTCATT
TCCATGTCTGGCATACTTGCAGGGGCATGGCGAACTTGCCCGTGCCTCTG
TTACAGCACATAAACACTCTGCGCAGCAGCTGCTGACGGCCATCTTGACT
TGGTGTTGACAGTCACGTGGATCGATAACACACGCACCTGGGTGGAACCC
ATCAACTATTTCACCATTTGTCTGTTTTCTGCGGCGCGTGTTTTTTCGCC
TTCTGTCGCACCTCTGTACTGCTGCTGCCGTTTTTCAACGTGCATACCCA
CCCACTGCCGAACACAGGGCCTTTTTCTGGCTCGCGTCCATGGCAGCAGC
TTCTGTGCTATGGACCATCTTCCCCGCCGCGCAGGTAGGTGACCGCTGGG
CTGGCATAGTATTTTTCTTCTTTTTTCCCCCCTCCCATTATTGGCTTGTT
CGTCGTTTGCCCCACTGGCCCCCATACTCCACTACGACTAGCTAGACGAC
CCAACCGGGGTCACACAGGAGGGGGGGACCCCTCCTGCGGTGCCTGCCTG
TTGAGTTTTTATCGCGAGCAGGGTGTAATGATGCCGTGCTCTGACCGCTT
GGCGCTACTTGGTATTGCAGTCGGTCGCACGGGCCTGCCCTGCCTTGCCA
GGCACCCGCCCACCCACGGCAGTACCGTAGATGACACAAGATACCACACC
CTCTGGATCGCGGCTTTTAGAGCTCCATTACTCCGTAACGAAGAGGGTGC
CTGCACCCAAACGACACATTTTCGGACAGTCCTGGACTAGATCTTTCCAA
CGCCACCCCTTTCGGCACTGGCACCCTTCTTGCTGGGGAGGAATCGAGCT
TTGAAAACCTGTCCAAGGGGTGTGGTATCTCGTGTCACCGACGGCGGTAG
TTGTGTCACTAACTGCTGTGGGGTGGTGCAGGGCGATCTTTTGCCTCCTG
CCGGCGCAAGCGAGCATCATGGAGCGGACCGTTTTCAGAGCGCAAAAAAG
CCTGGGGTCAGCCTGCCTGGTGCGCATGGAAGCACACCTATCTCTCGGTC
TTACATAATAATGACCGATCGGCCTGCTCGTCGTGTCTTGTTTCTCTCTC
TCTTCTTCACTTCCACGAAGGACGGCTGGGTGCTGACCATCATCACCGGT
GTCGGCCTGCAAAGCTTCGGGCGCATCGCGCTCGCCAAGGCGTACGTCAA
GACGGAGGCTGTCGTCAACGCTGCCGCCGCGGACGCCGCTCCCACGTCGG
ACGCCGGCGGGTCTGGTGGTAGCGGCGGGCGCCGAGGTGATGGCGCCCGG
GGCGGCGGGGATAGCGGCGGTGCCAGGATAGGCCGACGGAGGAGGGGAGA
TGGCGACGAGTCCGGCGACCGGCAAGACCAGTCCGGCTTGCTCAAGCTCA
ACGGGGTGTCCTCCTCCATAGGTGAGGTTTGAAGCATAAGCGCGAGGCTT
TTCGGAAGAGTGACTTGGCTCGACTGGATCTTTTGGTTCTATGTAGATAC
CCGTTGTTTGTTGGCTCGACTGAATCGTTTTTTTTGTCGGCGGATCGGGT
CTTTGTTTCCCCGCACGCCTTGGAGAGCGGACGGCGCCCCACGGATGGGT
GGTACCTTTACGAGAAGAGCAGAGTAATCTTTGGGTGGTAGTTGAGACAG
AGGATACATACGTACTCGCTGTTGGCTGCATCCGGAGTGTAGACTTCATC
CTTAAGCTGCCCCCCCCCCCCCCCCCCCCCCCCCCGGGGGGTTTCTGCTT
TCTTTTTTTTTTTTTTTTTCCCCCGGGGGGGGGGGGGGGTTGTTTTCCGG
GGTGTTNNNNNNNNNNGGGAAAAAACGTGCCCGGGGTTGGGTGCATCCGG
GGTGGTGACTTCACTCTTAAGGCGCCCCCCCCCCCCCCCCTCCGTCCCGG
GTGTGTTTCTGCTTTCTTTTGTCTTTTTGTTAGCCGCCGGAGTGGGATGG
GGCTTGATTCACGCGGTGATTCTCGTGGGCACGGCTCTGTCGAAGCACAT
GGGGCCCGGGGCGGCCTTCTCGCCTTCCTGCCCGCACGTCCCTACTGTGA
TCGTATCTGGTGAGGGCATGCGTCAGTGCTGCTGCCAGTTGCTGTGTGGC
ACGGGTCCTCTACATAAGCCTGTTATTTCTGTAGCGTGATCGAAGTCACC
CGGTTGCTCGTGCATAAATGATGTCGTAGACGAGGCCGATGCTGGTGCGG
GGGGGGGGGGCGGGCAGGCGGGGGGGGGGGGTTTAGGATTGCACGGCTTG
TACATGCAAGCCCCCAAAGGCTNNNNNNNNNNGGTGGCGCGGGGGGGGGG
GGGGGGGGGGGGGGGGGGGGGGGGGGGCGGGCGGGCGGTGGGGGGGGGTT
TAGGATTGCACGGCTTGTACATGCAAGCACCAAAAGTATTAAAAAAAACA
TGAACGCAATGCGTCGCTTGCTGCGAGGGAAGAGCGTCTTTGTGCAGGTT
CTCTTCATGTTTGGTCACCCGTGAAGTTTCACTCCTCTCCTCCAACCCCA
AGCCACTCCGTTGGTGCCGCACACGACACGCCCCCCCCCCCCCCCCCCCC
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCGCCCCCGCCCCCCCGC
GCCGCCCCGCGGGNNNNNNNNNNCCCCGCGGGGTTCGCCCCCCCCCCCCC
CCCCCCCACCCCGCTCGTTGTCGCCCCCGCTGCACCCCCCCCCCCCCCCC
CCCTTGGCCCCCCCTTGGGATCTCACGTACGGGTGTGCGGACCTACCTAT
GTAGCGTGTACGGAGTATGTTCTTACTGGTAGAAAAACCCAGCGATCCTT
CCAAGTTGTCGATGGCGTCCGCCCTGCCGCGATACTTGCCTTTCCGGTTC
GTACCGAAGCAGACCACCCACGACGCGCAATCCCCGCGCCCCCGACGTCG
CCGCCGCCGTTGGTAAATGCCACACCAAAACTGCTGTTTGTGTCCTGTCT
GCAATGCCGCTGCTCTCGGCAGCTCTGAGCGCCCAGGCCTTTGTGGTTTT
GGATCTTCTTCTCATGGCGGCCGCCTTTGCCGCGGCGCGGACGGGGAACG
CGGGACTCATGTGCTACTCGTTTGGGCTGCACTTCTTAGCGGCTCTCTCG
GTGAGGTTGTCGTCTAAATGCTTAATGCCACATATGCACATACTGTTGAA
AAGCGTGAATGCCCACTGCTGTACTACCAGTCAGCGCTGACTGGTAGTCC
AGTGGTCATTCACGCTTTTCAGTAAAAGCTACCGTAGGTGACATAAGATA
AGACACCCCCTGGACCGGTATTGAAAGCTTGGTTACTCCGCAACGAATAC
GATTCTAACCACAAACGCAACATTTTCGGACAGCTCTCGACGAGATCTTT
CCAACGCCGCCCTTTTCGGGACTGACGCTCTGCTTGCTGCGGAGTACTTG
AGCTTTGAAAATCGGTCCAGGGGGTGCCTTATCTTATGTCACCTACGGTA
ATGCCCGCGTCCTTCTAGCTGTTAAGCCAAGAACTTGGAAGTTCACCCCC
AGGGTTGCCGTCCCTGTGGCCAGCGCTGTATCTTTGCCCGAAAGTCATCA
TCGGTACGCTGACTGGTAGTCCAGTGGTCATTCGTGCTTTTCAACACATA
CGTACAACCCTCGTTTTGAGTCTGGCCGCGTTTTTATAAATAACAAGGTC
GGGGGGCTGGGAAAAACCTGCCTGCCTCCTTGTGGTGTTGTGGCTTCCTT
TGTAAGCCGTTTTTCTCGTGGAGAGGCGGTCAAAATAGATTGCCCCGATT
CAGGTCGTGGGTTAGTTTTCCGCTTCCTGTGTCGGTATTATATCGCTCGA
CCGGTTGGTTGAGATATTTCTCAGGTTATTTTGCCTCCACGGCTTGTTGT
CTTCACATCTAAAAACCGTTCCGATCTTTCTACCCAGTACACCTCCATGA
GTCCGTACTAATCCAACACTGACGCGGTCGATTCCCGTTGTCACAGGGTA
ACTTACCCTAAAAAGGATATATTTACTCAAAAAAGACATTGGGTTTATTT
TTACTTCGCCTTTCGCCAAGAACCGCTACATGCGTCGCCCGCCCACGGAC
GTAACAATAATACACGAGAGCAGCATGATTCGGAACATAACACCCGCTCC
ATCGACCCATTGTCTCTCCTCCCCGCGCACGCTCATTGCAGACTGGGCTT
AACTTCGTCGAGGGAGGGTGCGCGGTCTCTCTTCCGTTGCTGTATGCCGT
GGTTGTGATATCGGCGATCGCTCTCGCAAGATGCGGCCCGCTCAGATCTG
CCATGACGCGGCTCAGCCGATGACATGATGGCATCACACTCACCGACCCC
GACAAGGCTAGGGGGTGTTCTGAGAGCTTTTATGTGAGTCGGGGGTGGGG
TTGGGTGGTTGGTTGCCCACGCCGCGGTCTCGCTGCGCTTGATCGCCGTG
GAACAGTCAGCCGCAAGAGCCCGAGTTGCTCGCTCCCGAAGAGGAGGGGC
GACGTCCCTTGGGTTGTTTTTGCGCGGATCAGCCTTAATTAAGGGGAGGG
GGGTGGCGATAGCCCTTGTAAATGCGGAATGCCGCCAGAGCCCTGTTGCT
TGCAGGCTGCAGCTAGATGTACATAAGTCACTTTTAAATATATGCGTAGT
TTTTTACTTCCAGCTTTCTTTCACAGCGCAGAGGCGTCGTCCAGTGTCCG
TTCAGAAATTCGTAGGAGTATTTACGCATGCATATGCATTTGGTTCTTTT
GCCACTGCCCAAGAAAGTGCTCACTCAACGCGTTGGTGAGTGTCTGTGGG
TGAGGTGGTTGTCTGAACGAACATCAGAGGACCAGAGCGTTCGCGTCAAG
TACGTTCGTACACGCGTTGTATTGTAGCGAGAGCTGCTTCCAGGCAACCA
TGAAAATATCTCAAGTGCCGAACAGAAAGGGGTGCGACTGCTGTGCCAGA
GGTTTGCGCTCGGCTCGATCGAGAAAGTACCAGCACCATCTGATGGTGCC
AGGCAACAAAAATGGAAAATAAAAGTTGAAGGTGTG
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig626:19580..25415+

>mRNA_L-elsbetiae_contig626.14862.1 ID=mRNA_L-elsbetiae_contig626.14862.1|Name=mRNA_L-elsbetiae_contig626.14862.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1626bp|location=Sequence derived from alignment at L-elsbetiae_contig626:19580..25415+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCTGTGGGTGGTGGTTCTCGGCAAACGACCGGCTCTTGTCATCATCGG
CCTCATCGGATGCTGTGGGTGGTGGTTCTCGGCAAACGACCGGCTCTTGT
CATCATCGGCCTCATCGGGGCCTTTTTCTGGCTCGCGTCCATGGCAGCAG
CTTCTGTGCTATGGACCATCTTCCCCGCCGCGCAGGGCCTTTTTCTGGCT
CGCGTCCATGGCAGCAGCTTCTGTGCTATGGACCATCTTCCCCGCCGCGC
AGGACGGCTGGGTGCTGACCATCATCACCGGTGTCGGCCTGCAAAGCTTC
GGGCGCATCGCGCTCGCCAAGGCGTACGTCAAGACGGAGGCTGTCGTCAA
CGCTGCCGCCGCGGACGCCGCTCCCACGTCGGACGCCGGCGGGTCTGGTG
GTAGCGGCGGGCGCCGAGGTGATGGCGCCCGGGGCGGCGGGGATAGCGGC
GGTGCCAGGATAGGCCGACGGAGGAGGGGAGATGGCGACGAGTCCGGCGA
CCGGCAAGACCAGTCCGGCTTGCTCAAGCTCAACGGGGTGTCCTCCTCCA
TAGGACGGCTGGGTGCTGACCATCATCACCGGTGTCGGCCTGCAAAGCTT
CGGGCGCATCGCGCTCGCCAAGGCGTACGTCAAGACGGAGGCTGTCGTCA
ACGCTGCCGCCGCGGACGCCGCTCCCACGTCGGACGCCGGCGGGTCTGGT
GGTAGCGGCGGGCGCCGAGGTGATGGCGCCCGGGGCGGCGGGGATAGCGG
CGGTGCCAGGATAGGCCGACGGAGGAGGGGAGATGGCGACGAGTCCGGCG
ACCGGCAAGACCAGTCCGGCTTGCTCAAGCTCAACGGGGTGTCCTCCTCC
ATAGCCGCCGGAGTGGGATGGGGCTTGATTCACGCGGTGATTCTCGTGGG
CACGGCTCTGTCGAAGCACATGGGGCCCGGGGCGGCCTTCTCGCCTTCCT
GCCCGCACGTCCCTACTGTGATCGTATCTGCCGCCGGAGTGGGATGGGGC
TTGATTCACGCGGTGATTCTCGTGGGCACGGCTCTGTCGAAGCACATGGG
GCCCGGGGCGGCCTTCTCGCCTTCCTGCCCGCACGTCCCTACTGTGATCG
TATCTGCTCTGAGCGCCCAGGCCTTTGTGGTTTTGGATCTTCTTCTCATG
GCGGCCGCCTTTGCCGCGGCGCGGACGGGGAACGCGGGACTCATGTGCTA
CTCGTTTGGGCTGCACTTCTTAGCGGCTCTCTCGCTCTGAGCGCCCAGGC
CTTTGTGGTTTTGGATCTTCTTCTCATGGCGGCCGCCTTTGCCGCGGCGC
GGACGGGGAACGCGGGACTCATGTGCTACTCGTTTGGGCTGCACTTCTTA
GCGGCTCTCTCGACTGGGCTTAACTTCGTCGAGGGAGGGTGCGCGGTCTC
TCTTCCGTTGCTGTATGCCGTGGTTGTGATATCGGCGATCGCTCTCGCAA
GATGCGGCCCGCTCAGATCTGCCATGACGCGGCTCAGCCGATGAACTGGG
CTTAACTTCGTCGAGGGAGGGTGCGCGGTCTCTCTTCCGTTGCTGTATGC
CGTGGTTGTGATATCGGCGATCGCTCTCGCAAGATGCGGCCCGCTCAGAT
CTGCCATGACGCGGCTCAGCCGATGA
back to top