mRNA_L-elsbetiae_contig6257.14859.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6257.14859.1
Unique NamemRNA_L-elsbetiae_contig6257.14859.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig6257.14859.1 vs. uniprot
Match: A0A6H5KEF2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEF2_9PHAE)

HSP 1 Score: 75.5 bits (184), Expect = 8.680e-15
Identity = 33/36 (91.67%), Postives = 35/36 (97.22%), Query Frame = -1 
Query:  256 MARGGKGGKGPKPTFTRVIPKFLQQYETMLTGPKPR 363
            MA+GGKGGKGPKP FTRVIPKFLQQYETMLTGPKP+
Sbjct:    1 MAKGGKGGKGPKPAFTRVIPKFLQQYETMLTGPKPQ 36
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6257.14859.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KEF2_9PHAE8.680e-1591.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6257contigL-elsbetiae_contig6257:9593..9961 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size371
Cds size369
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816687.0913334-CDS-L-elsbetiae_contig6257:9592..99611622816687.0913334-CDS-L-elsbetiae_contig6257:9592..9961Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6257 9593..9961 +
1691683740.2266722-CDS-L-elsbetiae_contig6257:9592..99611691683740.2266722-CDS-L-elsbetiae_contig6257:9592..9961Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6257 9593..9961 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6257.14859.1prot_L-elsbetiae_contig6257.14859.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6257 9593..9961 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6257.14859.1

>prot_L-elsbetiae_contig6257.14859.1 ID=prot_L-elsbetiae_contig6257.14859.1|Name=mRNA_L-elsbetiae_contig6257.14859.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=123bp
MDCCYCCCTTTPTKPPVACRRSTARFWKIIEATIESNFQGSIEHCACGPG
QSDGESIGKTPLSSCLISSSGASCRISAFHRNRGAPWLGSGEHGLILLQK
LGYHSCKSRLRPFPSLTPSRHGF
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mRNA from alignment at L-elsbetiae_contig6257:9593..9961+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6257.14859.1 ID=mRNA_L-elsbetiae_contig6257.14859.1|Name=mRNA_L-elsbetiae_contig6257.14859.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=369bp|location=Sequence derived from alignment at L-elsbetiae_contig6257:9593..9961+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGACTGCTGCTACTGCTGTTGTACCACCACGCCAACAAAGCCCCCAGT
CGCTTGCCGCAGATCTACAGCACGCTTCTGGAAAATTATTGAGGCGACCA
TCGAGTCAAATTTTCAAGGGAGCATCGAGCATTGTGCATGTGGCCCTGGA
CAGTCTGATGGTGAATCGATAGGGAAAACTCCACTCTCCAGCTGCCTCAT
CAGCTCATCAGGCGCGTCATGTCGGATCTCTGCATTCCATCGCAATCGCG
GCGCACCTTGGCTTGGGTCCGGTGAGCATGGTCTCATACTGCTGCAGAAA
CTTGGGTATCACTCGTGTAAAAGTAGGCTTCGGCCCTTTCCCTCCCTTAC
CCCCTCGCGCCATGGCTTT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig6257:9593..9961+

>mRNA_L-elsbetiae_contig6257.14859.1 ID=mRNA_L-elsbetiae_contig6257.14859.1|Name=mRNA_L-elsbetiae_contig6257.14859.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=738bp|location=Sequence derived from alignment at L-elsbetiae_contig6257:9593..9961+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGACTGCTGCTACTGCTGTTGTACCACCACGCCAACAAAGCCCCCAGT
CGCTTGCCGCAGATCTACAGCACGCTTCTGGAAAATTATTGAGGCGACCA
TCGAGTCAAATTTTCAAGGGAGCATCGAGCATTGTGCATGTGGCCCTGGA
CAGTCTGATGGTGAATCGATAGGGAAAACTCCACTCTCCAGCTGCCTCAT
CAGCTCATCAGGCGCGTCATGTCGGATCTCTGCATTCCATCGCAATCGCG
GCGCACCTTGGCTTGGGTCCGGTGAGCATGGTCTCATACTGCTGCAGAAA
CTTGGGTATCACTCGTGTAAAAGTAGGCTTCGGCCCTTTCCCTCCCTTAC
CCCCTCGCGCCATGGCTTTATGGACTGCTGCTACTGCTGTTGTACCACCA
CGCCAACAAAGCCCCCAGTCGCTTGCCGCAGATCTACAGCACGCTTCTGG
AAAATTATTGAGGCGACCATCGAGTCAAATTTTCAAGGGAGCATCGAGCA
TTGTGCATGTGGCCCTGGACAGTCTGATGGTGAATCGATAGGGAAAACTC
CACTCTCCAGCTGCCTCATCAGCTCATCAGGCGCGTCATGTCGGATCTCT
GCATTCCATCGCAATCGCGGCGCACCTTGGCTTGGGTCCGGTGAGCATGG
TCTCATACTGCTGCAGAAACTTGGGTATCACTCGTGTAAAAGTAGGCTTC
GGCCCTTTCCCTCCCTTACCCCCTCGCGCCATGGCTTT
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