mRNA_L-elsbetiae_contig6257.14856.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6257.14856.1
Unique NamemRNA_L-elsbetiae_contig6257.14856.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6257.14856.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6257contigL-elsbetiae_contig6257:3287..4125 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size839
Cds size480
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6257.14856.1prot_L-elsbetiae_contig6257.14856.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6257 3295..3774 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816686.994384-UTR-L-elsbetiae_contig6257:3286..32941622816686.994384-UTR-L-elsbetiae_contig6257:3286..3294Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6257 3287..3294 +
1691683740.1778042-UTR-L-elsbetiae_contig6257:3286..32941691683740.1778042-UTR-L-elsbetiae_contig6257:3286..3294Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6257 3287..3294 +
1622816687.0238109-UTR-L-elsbetiae_contig6257:3774..41251622816687.0238109-UTR-L-elsbetiae_contig6257:3774..4125Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6257 3775..4125 +
1691683740.1982267-UTR-L-elsbetiae_contig6257:3774..41251691683740.1982267-UTR-L-elsbetiae_contig6257:3774..4125Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6257 3775..4125 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816687.0052984-CDS-L-elsbetiae_contig6257:3294..37741622816687.0052984-CDS-L-elsbetiae_contig6257:3294..3774Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6257 3295..3774 +
1691683740.188381-CDS-L-elsbetiae_contig6257:3294..37741691683740.188381-CDS-L-elsbetiae_contig6257:3294..3774Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6257 3295..3774 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6257.14856.1

>prot_L-elsbetiae_contig6257.14856.1 ID=prot_L-elsbetiae_contig6257.14856.1|Name=mRNA_L-elsbetiae_contig6257.14856.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=160bp
MFVYLYFPASQPLNISSFAIPFSPCPARILPLIRYPVISLPRLLVPSTNA
TAEMLATAKKKNGKRTVYSAQAFRKPFTRSNHLGPLSTTSGCVPLLHETT
MALRLQLHTNRVGSPQPRAHSLSCCPPSSGGRKLASASKKKPKYWGWKVT
PLDTRTHPQ*
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mRNA from alignment at L-elsbetiae_contig6257:3287..4125+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6257.14856.1 ID=mRNA_L-elsbetiae_contig6257.14856.1|Name=mRNA_L-elsbetiae_contig6257.14856.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=839bp|location=Sequence derived from alignment at L-elsbetiae_contig6257:3287..4125+ (Laminarionema elsbetiae ELsaHSoW15)
ACGTATGCATGTTTGTATATTTATATTTTCCAGCCTCGCAGCCTCTAAAT
ATCTCGTCGTTTGCCATCCCTTTCTCCCCCTGTCCTGCACGGATTTTACC
TTTAATTCGCTATCCCGTGATTTCACTTCCCCGTCTGCTTGTTCCATCAA
CAAACGCGACGGCCGAAATGCTAGCAACAGCAAAGAAAAAAAACGGAAAG
CGGACAGTCTATTCGGCTCAAGCCTTTCGAAAGCCTTTCACACGATCCAA
TCACCTTGGCCCTCTATCAACTACTTCCGGCTGTGTCCCTTTACTCCACG
AGACCACCATGGCTCTCCGTCTACAATTACATACAAATCGGGTCGGGTCG
CCCCAGCCTCGCGCACATTCCCTCTCGTGTTGCCCCCCTAGCTCCGGGGG
GAGAAAACTTGCATCTGCGAGTAAGAAGAAACCGAAATACTGGGGCTGGA
AGGTAACACCGCTGGACACACGTACACATCCTCAGTAGCCATGGCCTCTT
AGGCAACGGCGTCTTTAACCCCGCCTGCCGCAGCCTGAAAGCCAAACGCA
AGGGCGCGAGGGGGTGCAACTTGTTCTCTACAGGCACATCACGAGCGCAT
ATACGTATGTAGCAGCTGTCCTGACAAAGTCGCACGCGGCCCACCCCCAA
CAACAACACGGGCGGCTATTCACTAAACAGCTACACGGCCCGGCCCGTTC
GCACTTCTACCCAAGCATTTATCCATCCTCGTCATCTCCGAAGGACAGCA
GCTTTGCATTGTTTAGCTTTGCCAGCTTGGCTCGCTTGGTCTTCTTTTTA
GAGCCCCTGCCTCCCTCTGCCCCACCTCTACCAGCCGCC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig6257:3287..4125+

>mRNA_L-elsbetiae_contig6257.14856.1 ID=mRNA_L-elsbetiae_contig6257.14856.1|Name=mRNA_L-elsbetiae_contig6257.14856.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=960bp|location=Sequence derived from alignment at L-elsbetiae_contig6257:3287..4125+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTTTGTATATTTATATTTTCCAGCCTCGCAGCCTCTAAATATCTCGTC
GTTTGCCATCCCTTTCTCCCCCTGTCCTGCACGGATTTTACCTTTAATTC
GCTATCCCGTGATTTCACTTCCCCGTCTGCTTGTTCCATCAACAAACGCG
ACGGCCGAAATGCTAGCAACAGCAAAGAAAAAAAACGGAAAGCGGACAGT
CTATTCGGCTCAAGCCTTTCGAAAGCCTTTCACACGATCCAATCACCTTG
GCCCTCTATCAACTACTTCCGGCTGTGTCCCTTTACTCCACGAGACCACC
ATGGCTCTCCGTCTACAATTACATACAAATCGGGTCGGGTCGCCCCAGCC
TCGCGCACATTCCCTCTCGTGTTGCCCCCCTAGCTCCGGGGGGAGAAAAC
TTGCATCTGCGAGTAAGAAGAAACCGAAATACTGGGGCTGGAAGGTAACA
CCGCTGGACACACGTACACATCCTCAGTAGATGTTTGTATATTTATATTT
TCCAGCCTCGCAGCCTCTAAATATCTCGTCGTTTGCCATCCCTTTCTCCC
CCTGTCCTGCACGGATTTTACCTTTAATTCGCTATCCCGTGATTTCACTT
CCCCGTCTGCTTGTTCCATCAACAAACGCGACGGCCGAAATGCTAGCAAC
AGCAAAGAAAAAAAACGGAAAGCGGACAGTCTATTCGGCTCAAGCCTTTC
GAAAGCCTTTCACACGATCCAATCACCTTGGCCCTCTATCAACTACTTCC
GGCTGTGTCCCTTTACTCCACGAGACCACCATGGCTCTCCGTCTACAATT
ACATACAAATCGGGTCGGGTCGCCCCAGCCTCGCGCACATTCCCTCTCGT
GTTGCCCCCCTAGCTCCGGGGGGAGAAAACTTGCATCTGCGAGTAAGAAG
AAACCGAAATACTGGGGCTGGAAGGTAACACCGCTGGACACACGTACACA
TCCTCAGTAG
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