mRNA_L-elsbetiae_contig6255.14855.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6255.14855.1
Unique NamemRNA_L-elsbetiae_contig6255.14855.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6255.14855.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6255contigL-elsbetiae_contig6255:10198..10771 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size574
Cds size333
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6255.14855.1prot_L-elsbetiae_contig6255.14855.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6255 10366..10698 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816686.879884-UTR-L-elsbetiae_contig6255:10197..103651622816686.879884-UTR-L-elsbetiae_contig6255:10197..10365Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6255 10198..10365 +
1691683740.1086884-UTR-L-elsbetiae_contig6255:10197..103651691683740.1086884-UTR-L-elsbetiae_contig6255:10197..10365Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6255 10198..10365 +
1622816686.8999598-UTR-L-elsbetiae_contig6255:10698..107711622816686.8999598-UTR-L-elsbetiae_contig6255:10698..10771Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6255 10699..10771 +
1691683740.139891-UTR-L-elsbetiae_contig6255:10698..107711691683740.139891-UTR-L-elsbetiae_contig6255:10698..10771Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6255 10699..10771 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816686.8897574-CDS-L-elsbetiae_contig6255:10365..106981622816686.8897574-CDS-L-elsbetiae_contig6255:10365..10698Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6255 10366..10698 +
1691683740.127514-CDS-L-elsbetiae_contig6255:10365..106981691683740.127514-CDS-L-elsbetiae_contig6255:10365..10698Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6255 10366..10698 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6255.14855.1

>prot_L-elsbetiae_contig6255.14855.1 ID=prot_L-elsbetiae_contig6255.14855.1|Name=mRNA_L-elsbetiae_contig6255.14855.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=111bp
MGWDARISLWDGRHIPIPSHSQWDLANMYRFTRRLRVLGLYWMPQKSFKC
CATVRTPSNNGYSCSPSKPQEDKDAACAPNCAPNGVFVLENRTSLHPCWK
LLVVHENLDL*
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mRNA from alignment at L-elsbetiae_contig6255:10198..10771+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6255.14855.1 ID=mRNA_L-elsbetiae_contig6255.14855.1|Name=mRNA_L-elsbetiae_contig6255.14855.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=574bp|location=Sequence derived from alignment at L-elsbetiae_contig6255:10198..10771+ (Laminarionema elsbetiae ELsaHSoW15)
GGAAGGAAATGGGGAACTACAGGGTATATCGGACGGGAGGTCTTGAGCCC
ACATTGCATGGGAGAGGAGTAGGTAGCTCCGTTCACAGCGGGCTTGGGAC
GGGAGTAGCTGTGCTTGTGGTGGGACGGGAGCAAGTGAGGCAGGAATTCG
CCGTGGGATGGGAACGGGATGGGATGGGACGCACGTATTTCACTGTGGGA
TGGGCGTCACATCCCCATCCCGTCCCATTCCCAATGGGACCTTGCAAATA
TGTATCGCTTCACGCGCCGATTGCGCGTACTCGGTCTATACTGGATGCCG
CAGAAAAGTTTTAAGTGCTGTGCAACCGTAAGAACCCCTTCCAACAACGG
ATACTCGTGTTCCCCTTCAAAACCGCAGGAAGATAAGGATGCCGCCTGCG
CGCCAAATTGCGCGCCAAATGGCGTTTTTGTTTTGGAAAATCGTACCTCC
TTACACCCATGTTGGAAGCTTTTAGTAGTTCACGAAAATCTTGATCTGTG
AGCAAGTTTTTTATTTCGTCTGTTTATGGGAGAAAATGAAATCTTTAAAA
AACTCTTGCCCAAGATTTGATTTC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig6255:10198..10771+

>mRNA_L-elsbetiae_contig6255.14855.1 ID=mRNA_L-elsbetiae_contig6255.14855.1|Name=mRNA_L-elsbetiae_contig6255.14855.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=666bp|location=Sequence derived from alignment at L-elsbetiae_contig6255:10198..10771+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGGATGGGACGCACGTATTTCACTGTGGGATGGGCGTCACATCCCCAT
CCCGTCCCATTCCCAATGGGACCTTGCAAATATGTATCGCTTCACGCGCC
GATTGCGCGTACTCGGTCTATACTGGATGCCGCAGAAAAGTTTTAAGTGC
TGTGCAACCGTAAGAACCCCTTCCAACAACGGATACTCGTGTTCCCCTTC
AAAACCGCAGGAAGATAAGGATGCCGCCTGCGCGCCAAATTGCGCGCCAA
ATGGCGTTTTTGTTTTGGAAAATCGTACCTCCTTACACCCATGTTGGAAG
CTTTTAGTAGTTCACGAAAATCTTGATCTGTGAATGGGATGGGACGCACG
TATTTCACTGTGGGATGGGCGTCACATCCCCATCCCGTCCCATTCCCAAT
GGGACCTTGCAAATATGTATCGCTTCACGCGCCGATTGCGCGTACTCGGT
CTATACTGGATGCCGCAGAAAAGTTTTAAGTGCTGTGCAACCGTAAGAAC
CCCTTCCAACAACGGATACTCGTGTTCCCCTTCAAAACCGCAGGAAGATA
AGGATGCCGCCTGCGCGCCAAATTGCGCGCCAAATGGCGTTTTTGTTTTG
GAAAATCGTACCTCCTTACACCCATGTTGGAAGCTTTTAGTAGTTCACGA
AAATCTTGATCTGTGA
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