mRNA_L-elsbetiae_contig6255.14854.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6255.14854.1
Unique NamemRNA_L-elsbetiae_contig6255.14854.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6255.14854.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6255contigL-elsbetiae_contig6255:5062..5706 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size614
Cds size360
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6255.14854.1prot_L-elsbetiae_contig6255.14854.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6255 5316..5706 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816686.8242433-UTR-L-elsbetiae_contig6255:5061..53151622816686.8242433-UTR-L-elsbetiae_contig6255:5061..5315Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6255 5062..5315 +
1691683740.0757957-UTR-L-elsbetiae_contig6255:5061..53151691683740.0757957-UTR-L-elsbetiae_contig6255:5061..5315Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6255 5062..5315 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816686.83728-CDS-L-elsbetiae_contig6255:5315..53531622816686.83728-CDS-L-elsbetiae_contig6255:5315..5353Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6255 5316..5353 +
1691683740.0858214-CDS-L-elsbetiae_contig6255:5315..53531691683740.0858214-CDS-L-elsbetiae_contig6255:5315..5353Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6255 5316..5353 +
1622816686.848574-CDS-L-elsbetiae_contig6255:5384..57061622816686.848574-CDS-L-elsbetiae_contig6255:5384..5706Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6255 5385..5706 +
1691683740.0954754-CDS-L-elsbetiae_contig6255:5384..57061691683740.0954754-CDS-L-elsbetiae_contig6255:5384..5706Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6255 5385..5706 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6255.14854.1

>prot_L-elsbetiae_contig6255.14854.1 ID=prot_L-elsbetiae_contig6255.14854.1|Name=mRNA_L-elsbetiae_contig6255.14854.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=120bp
MANTSNTIYVVTPPAAGQNSSKRHFTHYYVCKCYRHHHPDASTTKVARRP
TSRASRHCRIRQTETSIHRTRFDRGIITTTNKAPPSTAMANTSNINTTKQ
TSPMRRTTQIKSFRSHGRK*
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mRNA from alignment at L-elsbetiae_contig6255:5062..5706+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6255.14854.1 ID=mRNA_L-elsbetiae_contig6255.14854.1|Name=mRNA_L-elsbetiae_contig6255.14854.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=645bp|location=Sequence derived from alignment at L-elsbetiae_contig6255:5062..5706+ (Laminarionema elsbetiae ELsaHSoW15)
CCCGGTTCGGCGCGTCTGTTCTAGCCCTGCGCACAAGCCTTGTTTGCCGT
TCATGTTTAGACGGTGCTAATAAAATGATGCTTTTATGTATCAAACAAAA
CACCAACTCCCCGACGCATCGACAACGAAGGTCGTGTTTGCAAGCACACA
CTACTACAATACTGTATTGCGTTCGACAGAAACCGAGCAACACTACACAT
ATCTCGGACCAAGACACGATCACGTCGACAAACAAAGCGTGAAAGGCAAC
GACGATGGCAAACACCAGCAACACTATTTATGTAGTAACACCAAACAGAC
ACGTTAACTTGAACGCAACAAAGCCCAGCGGCCGGACAAAACTCATCGAA
ACGTCACTTCACTCACTATTATGTGTGTAAGTGCTACAGACACCATCACC
CCGACGCATCGACAACGAAAGTCGCCCGTCGCCCTACAAGTAGGGCAAGC
AGACACTGCCGTATACGCCAGACAGAGACCTCAATCCATCGCACTCGTTT
CGATCGAGGCATTATCACGACGACAAACAAAGCACCACCGTCAACGGCCA
TGGCAAACACCAGCAACATCAATACCACCAAACAAACATCGCCAATGCGC
CGCACAACACAAATAAAGAGCTTCCGATCCCACGGCAGAAAATGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig6255:5062..5706+

>mRNA_L-elsbetiae_contig6255.14854.1 ID=mRNA_L-elsbetiae_contig6255.14854.1|Name=mRNA_L-elsbetiae_contig6255.14854.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=720bp|location=Sequence derived from alignment at L-elsbetiae_contig6255:5062..5706+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGCAAACACCAGCAACACTATTTATGTAGTAACACCATGGCAAACACC
AGCAACACTATTTATGTAGTAACACCCCCAGCGGCCGGACAAAACTCATC
GAAACGTCACTTCACTCACTATTATGTGTGTAAGTGCTACAGACACCATC
ACCCCGACGCATCGACAACGAAAGTCGCCCGTCGCCCTACAAGTAGGGCA
AGCAGACACTGCCGTATACGCCAGACAGAGACCTCAATCCATCGCACTCG
TTTCGATCGAGGCATTATCACGACGACAAACAAAGCACCACCGTCAACGG
CCATGGCAAACACCAGCAACATCAATACCACCAAACAAACATCGCCAATG
CGCCGCACAACACAAATAAAGAGCTTCCGATCCCACGGCAGAAAATGACC
CAGCGGCCGGACAAAACTCATCGAAACGTCACTTCACTCACTATTATGTG
TGTAAGTGCTACAGACACCATCACCCCGACGCATCGACAACGAAAGTCGC
CCGTCGCCCTACAAGTAGGGCAAGCAGACACTGCCGTATACGCCAGACAG
AGACCTCAATCCATCGCACTCGTTTCGATCGAGGCATTATCACGACGACA
AACAAAGCACCACCGTCAACGGCCATGGCAAACACCAGCAACATCAATAC
CACCAAACAAACATCGCCAATGCGCCGCACAACACAAATAAAGAGCTTCC
GATCCCACGGCAGAAAATGA
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