mRNA_L-elsbetiae_contig6250.14849.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6250.14849.1
Unique NamemRNA_L-elsbetiae_contig6250.14849.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig6250.14849.1 vs. uniprot
Match: D7FJT2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FJT2_ECTSI)

HSP 1 Score: 214 bits (546), Expect = 5.220e-69
Identity = 115/116 (99.14%), Postives = 115/116 (99.14%), Query Frame = 1 
Query:   13 MVIKTEVCAFSDTRIYPGHGVRMIRRDGQPITLFSAKCKSLLKQRKKPAKLTWTQAWRRLNKKIKVEEVTRRRTRKTTKLNRAIVGASLEEIKKKRSQKPEVRSAQREAAAKEVKA 360
            MVIKTEVCAFSDTRIYPGHGVR IRRDGQPITLFSAKCKSLLKQRKKPAKLTWTQAWRRLNKKIKVEEVTRRRTRKTTKLNRAIVGASLEEIKKKRSQKPEVRSAQREAAAKEVKA
Sbjct:    1 MVIKTEVCAFSDTRIYPGHGVRFIRRDGQPITLFSAKCKSLLKQRKKPAKLTWTQAWRRLNKKIKVEEVTRRRTRKTTKLNRAIVGASLEEIKKKRSQKPEVRSAQREAAAKEVKA 116
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BLAST of mRNA_L-elsbetiae_contig6250.14849.1 vs. uniprot
Match: A0A024TG11_9STRA (Uncharacterized protein n=8 Tax=Aphanomyces TaxID=100860 RepID=A0A024TG11_9STRA)

HSP 1 Score: 157 bits (397), Expect = 2.140e-46
Identity = 77/115 (66.96%), Postives = 98/115 (85.22%), Query Frame = 1 
Query:   13 MVIKTEVCAFSDTRIYPGHGVRMIRRDGQPITLFSAKCKSLLKQRKKPAKLTWTQAWRRLNKKIKVEEVTRRRTRKTTKLNRAIVGASLEEIKKKRSQKPEVRSAQREAAAKEVK 357
            MVIKTE CAFS++RIYPGHGVR++R+DG   TL ++KCKSL  QRKKPAK+ WT  WRR+NKK++VEE +RRR RKTTK+ RAIVG S++E+KKKR+QKP++R+A R+AA KE K
Sbjct:    1 MVIKTETCAFSESRIYPGHGVRLVRKDGNAYTLLNSKCKSLFLQRKKPAKIHWTLGWRRMNKKLRVEETSRRRARKTTKIQRAIVGVSVDELKKKRNQKPQLRAAARDAALKEAK 115
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BLAST of mRNA_L-elsbetiae_contig6250.14849.1 vs. uniprot
Match: A0A6G0WHE0_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WHE0_9STRA)

HSP 1 Score: 156 bits (394), Expect = 6.500e-46
Identity = 78/115 (67.83%), Postives = 96/115 (83.48%), Query Frame = 1 
Query:   13 MVIKTEVCAFSDTRIYPGHGVRMIRRDGQPITLFSAKCKSLLKQRKKPAKLTWTQAWRRLNKKIKVEEVTRRRTRKTTKLNRAIVGASLEEIKKKRSQKPEVRSAQREAAAKEVK 357
            MVIKTE CAFS++RIYPGHG R++R+DG    L ++KCKSL  QRKKPAK+ WT  WRR+NKK++VEEV RRR RKTTK+ RAIVG S++E+KKKR+QKP+VR+A REAA KE K
Sbjct:    1 MVIKTETCAFSESRIYPGHGSRLVRKDGNAYMLLNSKCKSLFLQRKKPAKIHWTLGWRRMNKKLRVEEVARRRARKTTKIQRAIVGVSVDELKKKRNQKPQVRAAAREAALKEAK 115
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BLAST of mRNA_L-elsbetiae_contig6250.14849.1 vs. uniprot
Match: A0A836CJ11_9STRA (Ribosomal protein L24e-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJ11_9STRA)

HSP 1 Score: 153 bits (387), Expect = 9.030e-45
Identity = 79/106 (74.53%), Postives = 90/106 (84.91%), Query Frame = 1 
Query:   13 MVIKTEVCAFSDTRIYPGHGVRMIRRDGQPITLFSAKCKSLLKQRKKPAKLTWTQAWRRLNKKIKVEEVTRRRTRKTTKLNRAIVGASLEEIKKKRSQKPEVRSAQ 330
            MVIKT+VCAFS+ RIYPGHG+R IR+DG P+   +AKCKSLL QRKKPAKLTWTQ+WRRLNKKIKVEEVTRRR R+TTK  RAIVGASL+EIK KR+  P+   AQ
Sbjct:    1 MVIKTDVCAFSEFRIYPGHGMRFIRKDGTPVVFINAKCKSLLMQRKKPAKLTWTQSWRRLNKKIKVEEVTRRRNRRTTKFQRAIVGASLDEIKAKRAAVPKKTPAQ 106
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BLAST of mRNA_L-elsbetiae_contig6250.14849.1 vs. uniprot
Match: T0Q6K9_SAPDV (50S ribosomal protein L24e n=2 Tax=Saprolegnia TaxID=4769 RepID=T0Q6K9_SAPDV)

HSP 1 Score: 152 bits (383), Expect = 2.850e-44
Identity = 75/112 (66.96%), Postives = 94/112 (83.93%), Query Frame = 1 
Query:   13 MVIKTEVCAFSDTRIYPGHGVRMIRRDGQPITLFSAKCKSLLKQRKKPAKLTWTQAWRRLNKKIKVEEVTRRRTRKTTKLNRAIVGASLEEIKKKRSQKPEVRSAQREAAAK 348
            MVIKT+ CAFS++RIYPGHG R+IR+DG    L ++KCKSL  QRKKPAK+ WT  WRR+NKK++VEEV+RRR RKTTK+ RAIVG S+E++KKKR+QKP VR+A R+AA K
Sbjct:    1 MVIKTDTCAFSESRIYPGHGTRLIRKDGNAFMLLNSKCKSLFLQRKKPAKIVWTLGWRRMNKKLRVEEVSRRRARKTTKIQRAIVGVSVEDLKKKRNQKPAVRAAARDAALK 112
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BLAST of mRNA_L-elsbetiae_contig6250.14849.1 vs. uniprot
Match: W7TW72_9STRA (60s ribosomal protein l24 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TW72_9STRA)

HSP 1 Score: 151 bits (381), Expect = 6.490e-44
Identity = 80/117 (68.38%), Postives = 96/117 (82.05%), Query Frame = 1 
Query:   13 MVIKTEVCAFSDTRIYPGHGVRMIRRDGQPITLFSAKCKSLLKQRKKPAKLTWTQAWRRLNKKIKVEEVTRRRTRKTTKLNRAIVGASLEEIKKKRSQKPEVRSAQREAAAKEVKAR 363
            MVIKT++C+FS+ R+YPGHG+R +RRD   +   +AK K L  QRKK A+L WTQ WRRL+KKIKVEE+ +RRTR+TTK  RAIVGASLEEIKKKR+QKPE R+AQREAA KEVK R
Sbjct:    1 MVIKTDMCSFSEYRVYPGHGIRFVRRDSATLVFSTAKTKGLYNQRKKAARLVWTQGWRRLHKKIKVEEIQKRRTRRTTKFQRAIVGASLEEIKKKRAQKPE-RNAQREAALKEVKER 116
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BLAST of mRNA_L-elsbetiae_contig6250.14849.1 vs. uniprot
Match: A0A8K1FKL7_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FKL7_PYTOL)

HSP 1 Score: 150 bits (380), Expect = 8.390e-44
Identity = 79/117 (67.52%), Postives = 92/117 (78.63%), Query Frame = 1 
Query:   13 MVIKTEVCAFSDTRIYPGHGVRMIRRDGQPITLFSAKCKSLLKQRKKPAKLTWTQAWRRLNKKIKVEEVTRRRTRKTTKLNRAIVGASLEEIKKKRSQKPEVRSAQREAAAKEVKAR 363
            MVIKTE C+FS+ RIYPGHG R IRRDG   T  +AK KSL  QRKKP K+ WT  WRR+NKKIKVEE+ RRRTRKT K+ RAIVG S ++I+KKR+QKP+VR+A REAA KE K R
Sbjct:    1 MVIKTETCSFSEGRIYPGHGSRYIRRDGTVYTFLNAKSKSLFMQRKKPTKIVWTLGWRRMNKKIKVEEIARRRTRKTAKVQRAIVGVSADDIRKKRNQKPQVRAAAREAALKEAKDR 117
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BLAST of mRNA_L-elsbetiae_contig6250.14849.1 vs. uniprot
Match: A0A2D4BH65_PYTIN (60S ribosomal protein L24, putative n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BH65_PYTIN)

HSP 1 Score: 148 bits (373), Expect = 9.670e-43
Identity = 77/117 (65.81%), Postives = 92/117 (78.63%), Query Frame = 1 
Query:   13 MVIKTEVCAFSDTRIYPGHGVRMIRRDGQPITLFSAKCKSLLKQRKKPAKLTWTQAWRRLNKKIKVEEVTRRRTRKTTKLNRAIVGASLEEIKKKRSQKPEVRSAQREAAAKEVKAR 363
            MVIKTE C+FS+ RIYPGHG R +RRDG   T  ++K KSL  QRKKP K+ WT  WRR+NKKIKVEEV RRRTRKT K+ RAI+G S ++I+KKR+QKP+VR+A REAA KE K R
Sbjct:    1 MVIKTETCSFSEGRIYPGHGSRYVRRDGTVYTFINSKSKSLFLQRKKPTKIVWTLGWRRMNKKIKVEEVARRRTRKTAKVQRAILGVSADDIRKKRNQKPQVRAAAREAALKEAKDR 117
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BLAST of mRNA_L-elsbetiae_contig6250.14849.1 vs. uniprot
Match: A0A1V9ZEL2_9STRA (60S ribosomal protein L24 (Fragment) n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZEL2_9STRA)

HSP 1 Score: 154 bits (390), Expect = 2.800e-42
Identity = 83/146 (56.85%), Postives = 103/146 (70.55%), Query Frame = 1 
Query:   22 KTEVCAFSDTRIYPGHGVRMIRRDGQPITLFSAKCKSLLKQRKKPAKLTWTQAWRRLNKKIKVEEVTRRRTRKTTKLNRAIVGASLEEIKKKRSQKPEVRSAQREAAAKEVKAR-KXXXXXXXXXXXXXXXKPTASKQKGGNTTCV 456
            KTE CAFS++RIYPGHG R+IR+DG    L ++KCKSL  QRKKPAK+ WT  WRR+NKK++VEEVTRRR RKTTK+ RAIVG S++E+KKKR+QKP VR+A R+AA KE K R K                P  + +KGGN   +
Sbjct:  280 KTETCAFSESRIYPGHGTRLIRKDGTTHILLNSKCKSLFLQRKKPAKIVWTLGWRRMNKKLRVEEVTRRRARKTTKIQRAIVGVSVDELKKKRNQKPAVRAAARDAALKEAKDRSKAKKHDKTPVNKAIKNAPKGNLKKGGNRGAI 425
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BLAST of mRNA_L-elsbetiae_contig6250.14849.1 vs. uniprot
Match: A0A6V1N3D6_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1N3D6_HETAK)

HSP 1 Score: 147 bits (370), Expect = 2.840e-42
Identity = 77/106 (72.64%), Postives = 85/106 (80.19%), Query Frame = 1 
Query:   13 MVIKTEVCAFSDTRIYPGHGVRMIRRDGQPITLFSAKCKSLLKQRKKPAKLTWTQAWRRLNKKIKVEEVTRRRTRKTTKLNRAIVGASLEEIKKKRSQKPEVRSAQ 330
            MVIKTE+CAFS+ RIYPGHG + +RRDGQP+ L S+K KSLL QRKKPAKLTWT  WRRLNKKIKVEE  RRRTR+  K  RAIVGASL+EIKKKR  KP    AQ
Sbjct:    1 MVIKTELCAFSEFRIYPGHGQKFVRRDGQPVMLISSKTKSLLLQRKKPAKLTWTVGWRRLNKKIKVEESARRRTRRAAKFQRAIVGASLDEIKKKRQAKPAASKAQ 106
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6250.14849.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FJT2_ECTSI5.220e-6999.14Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A024TG11_9STRA2.140e-4666.96Uncharacterized protein n=8 Tax=Aphanomyces TaxID=... [more]
A0A6G0WHE0_9STRA6.500e-4667.83Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A836CJ11_9STRA9.030e-4574.53Ribosomal protein L24e-domain-containing protein n... [more]
T0Q6K9_SAPDV2.850e-4466.9650S ribosomal protein L24e n=2 Tax=Saprolegnia Tax... [more]
W7TW72_9STRA6.490e-4468.3860s ribosomal protein l24 n=2 Tax=Monodopsidaceae ... [more]
A0A8K1FKL7_PYTOL8.390e-4467.52Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A2D4BH65_PYTIN9.670e-4365.8160S ribosomal protein L24, putative n=1 Tax=Pythiu... [more]
A0A1V9ZEL2_9STRA2.800e-4256.8560S ribosomal protein L24 (Fragment) n=1 Tax=Thrau... [more]
A0A6V1N3D6_HETAK2.840e-4272.64Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6250contigL-elsbetiae_contig6250:5175..8881 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score216.9
Seed ortholog evalue7e-54
Seed eggNOG ortholog2880.D7FJT2
Preferred nameRPL24
KEGG koko:K02896
KEGG Pathwayko03010,map03010
KEGG ModuleM00177,M00179
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000027,GO:0000075,GO:0000184,GO:0000278,GO:0000280,GO:0000902,GO:0000904,GO:0000956,GO:0001654,GO:0002181,GO:0003006,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005783,GO:0005829,GO:0005840,GO:0005844,GO:0005886,GO:0006139,GO:0006401,GO:0006402,GO:0006412,GO:0006413,GO:0006518,GO:0006605,GO:0006612,GO:0006613,GO:0006614,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006928,GO:0006935,GO:0006996,GO:0007049,GO:0007093,GO:0007154,GO:0007165,GO:0007275,GO:0007346,GO:0007399,GO:0007409,GO:0007411,GO:0007423,GO:0008104,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009507,GO:0009536,GO:0009605,GO:0009653,GO:0009719,GO:0009725,GO:0009733,GO:0009734,GO:0009755,GO:0009790,GO:0009791,GO:0009792,GO:0009892,GO:0009908,GO:0009987,GO:0010033,GO:0010458,GO:0010467,GO:0010468,GO:0010605,GO:0010629,GO:0012505,GO:0015031,GO:0015833,GO:0015934,GO:0016020,GO:0016043,GO:0016070,GO:0016071,GO:0019222,GO:0019439,GO:0019538,GO:0021545,GO:0021554,GO:0021675,GO:0022008,GO:0022402,GO:0022414,GO:0022607,GO:0022613,GO:0022618,GO:0022625,GO:0022626,GO:0023052,GO:0030030,GO:0030154,GO:0030182,GO:0031175,GO:0031290,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032870,GO:0032989,GO:0032990,GO:0032991,GO:0033036,GO:0033365,GO:0034613,GO:0034622,GO:0034641,GO:0034645,GO:0034655,GO:0040011,GO:0042221,GO:0042254,GO:0042255,GO:0042273,GO:0042330,GO:0042788,GO:0042886,GO:0043009,GO:0043010,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044267,GO:0044270,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0044770,GO:0044772,GO:0045047,GO:0045184,GO:0045786,GO:0045930,GO:0046483,GO:0046700,GO:0046907,GO:0048285,GO:0048367,GO:0048438,GO:0048467,GO:0048468,GO:0048513,GO:0048519,GO:0048523,GO:0048608,GO:0048666,GO:0048667,GO:0048699,GO:0048731,GO:0048812,GO:0048856,GO:0048858,GO:0048869,GO:0050789,GO:0050794,GO:0050896,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0051716,GO:0051726,GO:0060041,GO:0060255,GO:0061458,GO:0061564,GO:0065003,GO:0065007,GO:0070013,GO:0070727,GO:0070887,GO:0070925,GO:0070972,GO:0071310,GO:0071365,GO:0071495,GO:0071702,GO:0071704,GO:0071705,GO:0071826,GO:0071840,GO:0071944,GO:0072594,GO:0072599,GO:0072657,GO:0090150,GO:0090304,GO:0090567,GO:0097159,GO:0097485,GO:0120036,GO:0120039,GO:0140014,GO:1901360,GO:1901361,GO:1901363,GO:1901564,GO:1901566,GO:1901575,GO:1901576,GO:1902626,GO:1903047,GO:1990904
EggNOG free text desc.assembly of large subunit precursor of preribosome
EggNOG OGsCOG2075@1,KOG1722@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Ec32 ortholog descriptionRibosomal protein L24e-related
Ec32 orthologEc-06_010260.1
Exons5
Model size486
Cds size474
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6250.14849.1prot_L-elsbetiae_contig6250.14849.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6250 5175..8869 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816686.2166479-CDS-L-elsbetiae_contig6250:5174..53131622816686.2166479-CDS-L-elsbetiae_contig6250:5174..5313Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6250 5175..5313 -
1691683739.6351194-CDS-L-elsbetiae_contig6250:5174..53131691683739.6351194-CDS-L-elsbetiae_contig6250:5174..5313Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6250 5175..5313 -
1622816686.2338784-CDS-L-elsbetiae_contig6250:6586..67031622816686.2338784-CDS-L-elsbetiae_contig6250:6586..6703Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6250 6587..6703 -
1691683739.648133-CDS-L-elsbetiae_contig6250:6586..67031691683739.648133-CDS-L-elsbetiae_contig6250:6586..6703Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6250 6587..6703 -
1622816686.2453856-CDS-L-elsbetiae_contig6250:7218..72711622816686.2453856-CDS-L-elsbetiae_contig6250:7218..7271Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6250 7219..7271 -
1691683739.6580448-CDS-L-elsbetiae_contig6250:7218..72711691683739.6580448-CDS-L-elsbetiae_contig6250:7218..7271Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6250 7219..7271 -
1622816686.258514-CDS-L-elsbetiae_contig6250:8205..82831622816686.258514-CDS-L-elsbetiae_contig6250:8205..8283Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6250 8206..8283 -
1691683739.6719706-CDS-L-elsbetiae_contig6250:8205..82831691683739.6719706-CDS-L-elsbetiae_contig6250:8205..8283Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6250 8206..8283 -
1622816686.269044-CDS-L-elsbetiae_contig6250:8782..88691622816686.269044-CDS-L-elsbetiae_contig6250:8782..8869Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6250 8783..8869 -
1691683739.684517-CDS-L-elsbetiae_contig6250:8782..88691691683739.684517-CDS-L-elsbetiae_contig6250:8782..8869Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6250 8783..8869 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816686.281551-UTR-L-elsbetiae_contig6250:8869..88811622816686.281551-UTR-L-elsbetiae_contig6250:8869..8881Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6250 8870..8881 -
1691683739.7005918-UTR-L-elsbetiae_contig6250:8869..88811691683739.7005918-UTR-L-elsbetiae_contig6250:8869..8881Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6250 8870..8881 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6250.14849.1

>prot_L-elsbetiae_contig6250.14849.1 ID=prot_L-elsbetiae_contig6250.14849.1|Name=mRNA_L-elsbetiae_contig6250.14849.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=158bp
MVIKTEVCAFSDTRIYPGHGVRMIRRDGQPITLFSAKCKSLLKQRKKPAK
LTWTQAWRRLNKKIKVEEVTRRRTRKTTKLNRAIVGASLEEIKKKRSQKP
EVRSAQREAAAKEVKARKAANKAAKGSSAAMKAKPTASKQKGGNTTCVGR
VVFFSHF*
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mRNA from alignment at L-elsbetiae_contig6250:5175..8881-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6250.14849.1 ID=mRNA_L-elsbetiae_contig6250.14849.1|Name=mRNA_L-elsbetiae_contig6250.14849.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3707bp|location=Sequence derived from alignment at L-elsbetiae_contig6250:5175..8881- (Laminarionema elsbetiae ELsaHSoW15)
CCCTGAGCTACCATGGTCATCAAGACGGAGGTGTGCGCGTTCTCGGACAC
CCGCATCTACCCCGGTCATGGTGTGCGTATGATCCGGAGGGATGGACAGG
TGAGAGCGAGAACCATGCCAAGGCTGAGAACGAACCTCACACACGAGCCT
TACAATTTTCTCGGCAGTGGGCTTTGGGTGTGCACAGCACCGGCGGGAGA
GGCGGAAGGCTTCTCGATTGCTCTCTCCGATGTGTGGTGTCTAGCAGTGT
GACTACTTTTGGCTTGTCGGTACGGAAGGAAACGCTCTCAGTGTGTGTGT
GCGGCGGTAGCGTTGCATCTCTTCCTTGAAAATCTGCACCTCCCCGGTCA
GTCTATGGTGGCGCAACACGAGACTACGTGCAGAGGGTAGCCGGTCTCGG
CCTCAAAACCACCCGTGTCTACTTGGAGGTCCTTACGATGGCTACTGCTT
CGGAATAACGTAGCCTCTTTATGCACGGCATCTGCCATCTCCCACCTCTG
TTCCCTGTTTGTCCGTGTTGGTGTGTTCGGCATCGCCTCTGCCCGCTACA
CACTGCTGCTGTGTGTTGTCTGTGTGTTAATTTGCACATCACACACAGCC
CATCACCCTCTTCTCCGCCAAGTGCAAGAGCTTGCTCAAGCAGAGGAAGA
AGCCGGCCAAGCTCACCTGGACCCAGGTAAGGACCCAGGAGACTCACAGA
TGTCTACGCGGTCAATGGTCACGCAGTGTATGCAGGATAGTTACACCAAA
CACAGCTTCCCTTATCCCTTATTTACTCAGGTTGGTAAGCGGAGGTCGAC
GCGTGTGTGTGAGCATATCTAAAGATTGTTGGCAGGATGTGGTTTATTTT
ACCACTGTCATGTAGATAAAGAGTACATAGCAGTGTCTTCAAGTGAAGAG
GTTTTGTTTTCGTTTCGAAGTGCCTGGCGGTTACACGCACGCACACGCGC
TTGAAACATGGTGCGTGATCGCCCGGAAGCACACACCTTTTTTCTCGCCA
AGTGAAGGCTGACCGACACCATCCCATCTGTCAACCGGTTACACATCGCG
GTGGATGTTCATCAAGAAACACACACACAGGCATGCAACACTCGATTGCT
CGACCGGTCAATAGGTACAATGATCGAGGTTTCGGAGTGTCGTCTGAGGT
CGCTCGCCCCGAGGGTTGCCTAAGAAGCTAACAGAGTGTCGGCGTTGAAA
GCTGAAAACCCTCTCCTCCTAGACCATGTGTGTACGCAACCGACATGCAC
GAGGGGTGTGTACCGTCGTGGCGAGCCTGCCCTACCCACATCGCTATGAT
GTTTTTGCTTCTTAGCCTTAATGTAGCGGGCAGTATGCAGCATTCGCTGC
GTGTACCAAAGCTGCCGGAGGTGTCTATACATGAACTTGCAACGCCGCTT
TTCTCCTAGCAACCGAACTCGCTCGGGCAAAACAGACGCGACGTGATATG
TACCGAATGCCAACACCTTCAACTGCAAGCAAGCTTGTTCTTGATATATA
CCTACATCTGCATATTTCTTACGCGACGCGTACCGTCTCATCTGATCTCG
CTTCTGCTGCGCTGCTCTGTGTGCCTCCTGTGCTTTTTTCTGTTGCCCGT
TTTTTTCAAGGCATGGAGGCGCCTGAACAAAAAGATCAAGGTTGAGGAGG
TCACCCGCCGCCGGTGAGACTTTACTAGCATAACTTATGTGCAGTATATA
AACACTTAAAAATGGATGCCAGTCTTGAACCACGAGAGCCACCTTCCCTC
TTCTTGTTGCGCATCAGTTTCATCAGTAAATATATCCTGGTGAATACGGC
GGGTGCCACCTCTCCCTGGTGCCCAATCATTGCGTTCGAACCCACTTTTC
TCGCGAGGCTTGTGGAAATATAATGTGTTTTGACAGGATACGCGCCATCT
AGTTTGTTGGCTGTTTATCGAACCTGATGGGGACGGACCTTGATAGCGGG
GTCCACAGAGAGGCAAGGGTATTTATCGGGCGACGGCTCCCTGTATATGC
ATGCTGCCGCTGTCGCGAACTGCTGCTGTAGCTGCAATCTCTCTGGTTAT
TCCCGTCGTCCCCTCACACTGTCGGTTCGTCCATGTGAGTGAGTGACTTA
CGGTTAGAATCATAGAGTCATGCTTCCTGTTTCCAACCGACACCCGAAAA
ACGTCAACACGAATGGAACACACAACAGCACACGCAAGACCACCAAGCTC
AACCGCGCGATCGTGGGTGCCTCGCTGGAGGAGATCAAGAAGAAGCGCAG
TCAGAAGCCGGAGGTCCGCAGCGCACAGCGCGAGGCGGCCGCCAAGTGAG
TATTTTACGGCGGTGACACTAGTAGAGGGTTTTGACATGTGTTTTGGTCC
CATTTATTCGGGCGCTTGCCACACGTTTCGGTGTGTGCACAACATGCACG
TTGCGGTGCTGCTTCTTTGTAAAGAATGACGTATCCGCCGGGGTCACACA
GGAGGGGGTAAATAACCACCGGGGCTTTTTCGTCTTTTTTCATTTATTGT
ATTGTTTGCTCCACCTTACTCCTGCGGTTCTTGCCTTGAGTTTTATCGCG
AGATGGGTACGGCTGAGTATATTTGATCGTGTTGCCAACTAACCCTTGAC
CCAAGCCCGCACTACGGACCAAGCTGAGTTCGGGTACCGGGTAGAAAGGT
CGGGACGGCTTTTAATGTGTGAAGACAATGACGACAGCAACAAGGAACAA
ACGAGTACGGTGGGGGGTGGGGGTGTCGTAAGTTTACGGCCTCTCGGATA
GTTCAGACATTCTAGCCATCACTTTGGGAATGGAAGATGGATTTAAAGAT
GCCAAAAGCGGGGGCCGTGTTGACGCCCAGAATTTTATGGATTTTAACTC
GTCTGCTGGTTTGGTTTGCGGGCAAGGGCAGTGAGAGCGAGGCGGCTGCG
GAGTGGTTGGCCAGCATGGCCAAGAATGTTGATGCATGGATGGCTGCCTG
GCCATGACTCGACGGAACTCTACTCTTTCCAACCTCTTAAATTCTTTAGT
CGAGCTTATCGCCGTCTATTCTCGCCCGAAGAGTAATACCCCGTGCCACT
TTTTTCGGCGACGCTTGCGCCGATGGACTCATGTAGCGGTAACTTGGCCG
TACGGCAGTAGTCAATGAAGCGGTGGTCTGGACCAGCGGGGGCTAAGACT
TTCCTTGCCTTGCCGGAAGGTTTGTGAGGTTCGTCCGTGCAGGCCATGGC
GTTGTTGTTCTCTCTGTGCCCGGGCCATTTGTGTTTATTTGGCGTGTGTT
GTGGCCCTGCTTTCCGTGCGTACATGAACTCACACACACACTCTCCAGCA
CCTGTATGGATGAGGTGAAACGGGGTGGCGCGATCCTGGTCGTGGCTGGC
ACATGTTCGTTCACGGCAACGCGGTGTTTTGTGTGTGCTTGATTTATCTA
CCATGTTAGTCTTGCCTCACAGCAGTCTTGAAGTATTACGGTATCGCGGG
CCCCCAATGTTAAATAACCTTCTCTCCAAGACCAGACTACGCACAGACCC
CCCCTGCCGCACACACAGGGTCTTTAACGCCGCCCTTTTTTTCTTTTCTT
TTTCCGTGCCTGCCGCAGGGAGGTGAAGGCACGCAAGGCCGCCAACAAGG
CCGCGAAGGGCTCCTCCGCCGCCATGAAGGCCAAGCCCACGGCTTCCAAG
CAGAAGGGCGGCAACACCACGTGCGTCGGTCGGGTCGTTTTTTTTTCTCA
CTTTTAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig6250:5175..8881-

>mRNA_L-elsbetiae_contig6250.14849.1 ID=mRNA_L-elsbetiae_contig6250.14849.1|Name=mRNA_L-elsbetiae_contig6250.14849.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=948bp|location=Sequence derived from alignment at L-elsbetiae_contig6250:5175..8881- (Laminarionema elsbetiae ELsaHSoW15)
ATGGTCATCAAGACGGAGGTGTGCGCGTTCTCGGACACCCGCATCTACCC
CGGTCATGGTGTGCGTATGATCCGGAGGGATGGACAGATGGTCATCAAGA
CGGAGGTGTGCGCGTTCTCGGACACCCGCATCTACCCCGGTCATGGTGTG
CGTATGATCCGGAGGGATGGACAGCCCATCACCCTCTTCTCCGCCAAGTG
CAAGAGCTTGCTCAAGCAGAGGAAGAAGCCGGCCAAGCTCACCTGGACCC
AGCCCATCACCCTCTTCTCCGCCAAGTGCAAGAGCTTGCTCAAGCAGAGG
AAGAAGCCGGCCAAGCTCACCTGGACCCAGGCATGGAGGCGCCTGAACAA
AAAGATCAAGGTTGAGGAGGTCACCCGCCGCCGGCATGGAGGCGCCTGAA
CAAAAAGATCAAGGTTGAGGAGGTCACCCGCCGCCGCACACGCAAGACCA
CCAAGCTCAACCGCGCGATCGTGGGTGCCTCGCTGGAGGAGATCAAGAAG
AAGCGCAGTCAGAAGCCGGAGGTCCGCAGCGCACAGCGCGAGGCGGCCGC
CAACACACGCAAGACCACCAAGCTCAACCGCGCGATCGTGGGTGCCTCGC
TGGAGGAGATCAAGAAGAAGCGCAGTCAGAAGCCGGAGGTCCGCAGCGCA
CAGCGCGAGGCGGCCGCCAAGGAGGTGAAGGCACGCAAGGCCGCCAACAA
GGCCGCGAAGGGCTCCTCCGCCGCCATGAAGGCCAAGCCCACGGCTTCCA
AGCAGAAGGGCGGCAACACCACGTGCGTCGGTCGGGTCGTTTTTTTTTCT
CACTTTTAGGGAGGTGAAGGCACGCAAGGCCGCCAACAAGGCCGCGAAGG
GCTCCTCCGCCGCCATGAAGGCCAAGCCCACGGCTTCCAAGCAGAAGGGC
GGCAACACCACGTGCGTCGGTCGGGTCGTTTTTTTTTCTCACTTTTAG
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