mRNA_L-elsbetiae_contig6242.14844.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6242.14844.1
Unique NamemRNA_L-elsbetiae_contig6242.14844.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6242.14844.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6242contigL-elsbetiae_contig6242:9362..9963 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size603
Cds size351
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816685.6977708-CDS-L-elsbetiae_contig6242:9361..97121622816685.6977708-CDS-L-elsbetiae_contig6242:9361..9712Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6242 9362..9712 +
1691683739.2184217-CDS-L-elsbetiae_contig6242:9361..97121691683739.2184217-CDS-L-elsbetiae_contig6242:9361..9712Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6242 9362..9712 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816685.710837-UTR-L-elsbetiae_contig6242:9712..99631622816685.710837-UTR-L-elsbetiae_contig6242:9712..9963Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6242 9713..9963 +
1691683739.2318344-UTR-L-elsbetiae_contig6242:9712..99631691683739.2318344-UTR-L-elsbetiae_contig6242:9712..9963Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6242 9713..9963 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6242.14844.1prot_L-elsbetiae_contig6242.14844.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6242 9362..9712 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6242.14844.1

>prot_L-elsbetiae_contig6242.14844.1 ID=prot_L-elsbetiae_contig6242.14844.1|Name=mRNA_L-elsbetiae_contig6242.14844.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=117bp
LRIPPTSSEAAPRITASSVFLFTDTHTRTSARARVRANLEAAHHSWWLRS
NRSGMFFSFYQCAVSTPGTGTVIAPLLVLAGSTRQYCCHLVYRVYLWKDG
RLHMYMVQDRCMCRLS*
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mRNA from alignment at L-elsbetiae_contig6242:9362..9963+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6242.14844.1 ID=mRNA_L-elsbetiae_contig6242.14844.1|Name=mRNA_L-elsbetiae_contig6242.14844.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=602bp|location=Sequence derived from alignment at L-elsbetiae_contig6242:9362..9963+ (Laminarionema elsbetiae ELsaHSoW15)
CTCCGAATACCACCAACCTCTAGTGAGGCTGCACCACGCATCACAGCTTC
TTCTGTTTTTCTTTTTACGGATACCCACACGCGTACCAGTGCTCGGGCAA
GGGTCCGAGCAAATTTAGAGGCAGCACACCATTCTTGGTGGCTGCGTAGT
AACCGCAGTGGTATGTTTTTTTCGTTCTACCAATGTGCTGTGTCTACCCC
GGGCACAGGTACAGTGATAGCTCCCCTGCTGGTGTTAGCAGGCTCAACAA
GACAATATTGTTGTCATCTTGTGTATCGGGTGTACTTGTGGAAGGATGGA
AGGTTACATATGTATATGGTGCAAGACAGGTGCATGTGTCGTTTGAGTTA
GAAGATAAAAAACGGATGCGTTCCCTGAAAAGCGACGAGATGCCTTTTGG
CTGTCGATCCACACGATGAGCCAACAGCTTTGAAATCCAGGGGAGGTATT
CCAGGAGAGGACCCGAAGCGACACTTGTTTTTTCTATAGCGGTTATTTTT
TGCCATCTCCCACAGAAAATGCCGTAGATCTCTCTCCAGCTGCCCTATCT
CGCCGCAAAATCGCTTTTTGCGCTTCGAAACAAAAACCGAAACCAAAATT
CC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig6242:9362..9963+

>mRNA_L-elsbetiae_contig6242.14844.1 ID=mRNA_L-elsbetiae_contig6242.14844.1|Name=mRNA_L-elsbetiae_contig6242.14844.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=702bp|location=Sequence derived from alignment at L-elsbetiae_contig6242:9362..9963+ (Laminarionema elsbetiae ELsaHSoW15)
CTCCGAATACCACCAACCTCTAGTGAGGCTGCACCACGCATCACAGCTTC
TTCTGTTTTTCTTTTTACGGATACCCACACGCGTACCAGTGCTCGGGCAA
GGGTCCGAGCAAATTTAGAGGCAGCACACCATTCTTGGTGGCTGCGTAGT
AACCGCAGTGGTATGTTTTTTTCGTTCTACCAATGTGCTGTGTCTACCCC
GGGCACAGGTACAGTGATAGCTCCCCTGCTGGTGTTAGCAGGCTCAACAA
GACAATATTGTTGTCATCTTGTGTATCGGGTGTACTTGTGGAAGGATGGA
AGGTTACATATGTATATGGTGCAAGACAGGTGCATGTGTCGTTTGAGTTA
GCTCCGAATACCACCAACCTCTAGTGAGGCTGCACCACGCATCACAGCTT
CTTCTGTTTTTCTTTTTACGGATACCCACACGCGTACCAGTGCTCGGGCA
AGGGTCCGAGCAAATTTAGAGGCAGCACACCATTCTTGGTGGCTGCGTAG
TAACCGCAGTGGTATGTTTTTTTCGTTCTACCAATGTGCTGTGTCTACCC
CGGGCACAGGTACAGTGATAGCTCCCCTGCTGGTGTTAGCAGGCTCAACA
AGACAATATTGTTGTCATCTTGTGTATCGGGTGTACTTGTGGAAGGATGG
AAGGTTACATATGTATATGGTGCAAGACAGGTGCATGTGTCGTTTGAGTT
AG
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