mRNA_L-elsbetiae_contig6240.14842.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6240.14842.1
Unique NamemRNA_L-elsbetiae_contig6240.14842.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig6240.14842.1 vs. uniprot
Match: D8LDA0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDA0_ECTSI)

HSP 1 Score: 259 bits (662), Expect = 8.850e-79
Identity = 127/180 (70.56%), Postives = 144/180 (80.00%), Query Frame = 1 
Query:   43 RSMRVVEVTDLFRTTNGLKCTLAEAYACCFDRVEKGLHNAAVDARMTMELHNLWRRAGQPEQPFGIPLSFYVVNFHSFKPSNSRHATLWGLLRPDGIAGGG------GAIEKDSGSNTYKLSFRNNRDRDTYLFCLERKMSSAGLKWQGGRQFVPGKKGAGDGYQLSCGKFKMHVLEHER 564
            R MRVVEVTDLFRT NGLKCTL EAYA CFDR+E+G HNAA DARMTMEL NLWRRAG+P +P G+PLSF++VNFHSFKPS SR A+L G+LRP+G   GG      GA+EKDSGSNTYKL FR+   R+ YL CLERKM +AGL W+   +FV GKKGA DGYQLSCG FKMHVLE +R
Sbjct:  194 RRMRVVEVTDLFRTMNGLKCTLQEAYAHCFDRMEEGAHNAAADARMTMELFNLWRRAGEPREPLGLPLSFFLVNFHSFKPSRSRQASL-GMLRPEGGGAGGLGRGIHGALEKDSGSNTYKLKFRSREGREAYLHCLERKMLAAGLAWEAAPEFVCGKKGARDGYQLSCGSFKMHVLERDR 372
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BLAST of mRNA_L-elsbetiae_contig6240.14842.1 vs. uniprot
Match: A0A7S0DL02_9EUKA (Hypothetical protein n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0DL02_9EUKA)

HSP 1 Score: 104 bits (259), Expect = 3.610e-21
Identity = 66/174 (37.93%), Postives = 93/174 (53.45%), Query Frame = 1 
Query:   52 RVVEVTDLFRTTNGLKCTLAEAYACCFDRVEKGLHNAAVDARMTMELHNLWRRAGQPEQPFGIPLSFYVVNFHSFKPSN---SRHATLWGLLRPDGIAGGGGAIEKDSGSNTYKLSFRNNRDRDTYLFCLERKMSSAGLKWQGGRQFVPGKKGAGDGYQLSCGKFKMHVLEHER 564
            +++++   F TTNG +C LAEAY   F R     HNA  DA++TMEL++ W  A Q  Q   + LSF+ +N+H FK SN   SR   LW  LRP         IE+D G N YKL +R   DRD Y+  +++++S   +   G     P K G G G ++  G F+ H+    R
Sbjct:  152 QIIDLAYKFVTTNGHRCKLAEAYRTVFRRNFLA-HNAGDDAKVTMELYHYWNEA-QKRQTVRVDLSFFCINWHCFKLSNTGMSRGDALWKFLRPRSTDREV-LIEEDDGKNAYKLKYRQKADRDAYMLLVKKRLSEHKIYPIG----KPLKVGNGKGTEVDFGVFRSHLYRVVR 318
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BLAST of mRNA_L-elsbetiae_contig6240.14842.1 vs. uniprot
Match: A0A835YNX9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNX9_9STRA)

HSP 1 Score: 97.1 bits (240), Expect = 1.630e-18
Identity = 60/144 (41.67%), Postives = 83/144 (57.64%), Query Frame = 1 
Query:   40 GRSMRVVEVTDLFRTTNGLKCTLAEAYACCF-DRVEK--GLHNAAVDARMTMELHNLWRRAGQPEQPFGIPLSFYVVNFHSFKPSNS---RHATLWGLLRPDGIAGGGGAIEKDSGSNTYKLSFRNNRDRDTYLFCLERKMSSA 453
            G S+RVV+++D FR+ +  KC L+EAY   F DR  +  G H+AA DAR+ MEL   WRR G P     + L FYVVN H  +   +   RH TL+  LRP+     G  +E+D G N +KL FR   +R  Y+  + R+M +A
Sbjct:  158 GVSVRVVDLSDHFRSLHNSKCQLSEAYRAVFEDRPAQHWGAHHAAADARLCMELFRRWRRGGCPRS-VPLNLKFYVVNVHGLRRGGAHQERHQTLFEYLRPE-RGNRGVVLEQDDGRN-FKLKFREENERAAYMCIVRRRMQAA 298
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BLAST of mRNA_L-elsbetiae_contig6240.14842.1 vs. uniprot
Match: A0A8J6C368_DIALT (C3H1-type domain-containing protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J6C368_DIALT)

HSP 1 Score: 73.9 bits (180), Expect = 1.250e-10
Identity = 50/143 (34.97%), Postives = 78/143 (54.55%), Query Frame = 1 
Query:   52 RVVEVTDLFRTTNGLKCTLAEAYACCFDRVEKGLHNAAVDARMTMELHNLWRRAGQPEQPFGIPLSFYVVNFHSFKPSNS---RHATL-------WGLLRPDGIAGGGGAIEK--DSGSNTYKLSFRNNRDRDTYLFCLERKM 444
            ++V+++D F+TT G KC L+EAY   F R     H+A  DA+MTMEL+N WR      QP  + L +Y V +HS++P  +    HA L       W +LRP+  +     IE+  D+    + L FR + +R  Y   ++R++
Sbjct:  197 QIVDLSDEFKTTQGNKCQLSEAYREIFGRTGSA-HDAIGDAKMTMELYNWWRTHSM--QPTPLRLCWYYVKWHSWRPVEAGLGAHAGLDEYEAYRWKVLRPE-RSDRSTCIEELDDALRKEFVLKFRTDSERVAYFNLVKRRL 335
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6240.14842.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D8LDA0_ECTSI8.850e-7970.56Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S0DL02_9EUKA3.610e-2137.93Hypothetical protein n=1 Tax=Amorphochlora amoebif... [more]
A0A835YNX9_9STRA1.630e-1841.67Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A8J6C368_DIALT1.250e-1034.97C3H1-type domain-containing protein n=1 Tax=Diacro... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6240contigL-elsbetiae_contig6240:8216..10409 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score259.2
Seed ortholog evalue1.3e-66
Seed eggNOG ortholog2880.D8LDA0
Hectar predicted targeting categoryother localisation
EggNOG OGs2EQUY@1,2STSS@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons3
Model size1455
Cds size519
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6240.14842.1prot_L-elsbetiae_contig6240.14842.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6240 9104..10361 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816685.51211-UTR-L-elsbetiae_contig6240:8215..91031622816685.51211-UTR-L-elsbetiae_contig6240:8215..9103Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6240 8216..9103 -
1691683739.0887616-UTR-L-elsbetiae_contig6240:8215..91031691683739.0887616-UTR-L-elsbetiae_contig6240:8215..9103Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6240 8216..9103 -
1622816685.5616693-UTR-L-elsbetiae_contig6240:10361..104091622816685.5616693-UTR-L-elsbetiae_contig6240:10361..10409Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6240 10362..10409 -
1691683739.140424-UTR-L-elsbetiae_contig6240:10361..104091691683739.140424-UTR-L-elsbetiae_contig6240:10361..10409Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6240 10362..10409 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816685.5223255-CDS-L-elsbetiae_contig6240:9103..92871622816685.5223255-CDS-L-elsbetiae_contig6240:9103..9287Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6240 9104..9287 -
1691683739.102253-CDS-L-elsbetiae_contig6240:9103..92871691683739.102253-CDS-L-elsbetiae_contig6240:9103..9287Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6240 9104..9287 -
1622816685.532666-CDS-L-elsbetiae_contig6240:9590..98261622816685.532666-CDS-L-elsbetiae_contig6240:9590..9826Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6240 9591..9826 -
1691683739.118151-CDS-L-elsbetiae_contig6240:9590..98261691683739.118151-CDS-L-elsbetiae_contig6240:9590..9826Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6240 9591..9826 -
1622816685.546311-CDS-L-elsbetiae_contig6240:10262..103611622816685.546311-CDS-L-elsbetiae_contig6240:10262..10361Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6240 10263..10361 -
1691683739.131397-CDS-L-elsbetiae_contig6240:10262..103611691683739.131397-CDS-L-elsbetiae_contig6240:10262..10361Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6240 10263..10361 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6240.14842.1

>prot_L-elsbetiae_contig6240.14842.1 ID=prot_L-elsbetiae_contig6240.14842.1|Name=mRNA_L-elsbetiae_contig6240.14842.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=173bp
MRVVEVTDLFRTTNGLKCTLAEAYACCFDRVEKGLHNAAVDARMTMELHN
LWRRAGQPEQPFGIPLSFYVVNFHSFKPSNSRHATLWGLLRPDGIAGGGG
AIEKDSGSNTYKLSFRNNRDRDTYLFCLERKMSSAGLKWQGGRQFVPGKK
GAGDGYQLSCGKFKMHVLEHER*
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mRNA from alignment at L-elsbetiae_contig6240:8216..10409-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6240.14842.1 ID=mRNA_L-elsbetiae_contig6240.14842.1|Name=mRNA_L-elsbetiae_contig6240.14842.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2194bp|location=Sequence derived from alignment at L-elsbetiae_contig6240:8216..10409- (Laminarionema elsbetiae ELsaHSoW15)
GGGGGGAAGGACGGAGAGGCACGCGGCGCGCGGACCGTGGGCAGAAGCAT
GCGGGTGGTGGAGGTCACGGATCTGTTCCGGACAACGAACGGGCTCAAAT
GCACGCTCGCGGAGGCGTACGCTTGCTGCTTCGACAGGGTGGAGAAGGTG
CACAGACACTTGGTTGTTGCTTTGCGCCCTTGTCTCTCAAGCTATCACAA
ATCCACCGCAGGGTCCCACAGCAACAGACAACAGTAGTTGGTTGAAAGGG
AACCCCTCGGATGCTTGTTGCTAGCCTTATTCTCGGAGGCGGGGCGCGGG
AGGATCAAGTCTACTGGTAATACTTGCCATTTGAGAACAATCGTTCGACT
GCTCTTAACTCTCATGTGATGTACCTGTCTGTGTGGCGGATGGAGACACT
TAATACGAAGTACATAAAAAACATGCACGCATGCCACTGCTCCTTGTTCA
TGCAAACAATACGGCGTTCATTTTTATGCCCCCATACACTTCATCTCTCT
CTCTCTCTCCCCTTCCTCCACCACCGCTCTCATGTATCCGTCCCTTCCTT
CCCACACACGCTTCGCCGAAAAAAAACCGAAAGGGCTTGCACAACGCCGC
CGTCGATGCTCGCATGACCATGGAGCTCCACAACTTATGGAGGCGCGCGG
GGCAGCCAGAGCAGCCGTTTGGTATCCCGCTCTCGTTTTACGTCGTGAAC
TTCCACTCCTTCAAGCCCAGCAACAGCCGCCACGCGACGCTTTGGGGCTT
GCTCCGCCCAGATGGGATCGCCGGAGGGGGCGGGGCCATCGAGAAGGATA
GCGGGAGCAACACCTACAAGTAAATTTTGTTCAATCGAAACGGCAGCCAC
TCCGTAGCGCGTGTGTTGCGCCGGCGTTGCCAGTTCGGGACAGATTTTGC
CGCAAACGAAAGAGGTGGCTAGACAGACTCGGTTCGGCACTCGGCGGTAC
ATGTCTATTGGTTGCACCACGGTTTGTTCATGTTGGGTGGGCTGCTGGCG
TTTTCGCTTTCGTGTTTTGGCTTTGTCTTAAAATGCCCCTGAAAACACAG
CGATGGCCATTGATATGAGGATTTGGGGCGCCACCGGTCTCGCGCCTGCC
CCCCCCCACGCGCATAAACCAGGCTGTCGTTCCGAAATAATCGAGACCGA
GACACCTACCTGTTCTGCCTGGAGCGCAAGATGTCATCGGCCGGCCTGAA
GTGGCAGGGGGGTCGGCAGTTCGTCCCCGGCAAGAAGGGGGCGGGGGATG
GCTACCAGCTCTCCTGCGGGAAGTTCAAGATGCACGTGCTTGAGCACGAG
CGCTGAGTTTTTGTTTCGATTGGCTAGGCTGTTGTGGTTTGAGAATATAC
AATCGCTGTCTGGCGAGAGAGCGGGTTGGTTGGTTGGTTTGCTGAGCGCA
GCCAGGGTTCGGTTTTCGGTCGGTTGATCAGGAGTGCACCGGGGTGCATT
ATAGGAGAGACTCACATACCGTAATAATATTCCTTGTGACAGCCCCCCCT
TGGAGTGGATGCCACCCCCCCCCAAAATTCAGCAAGGGGCAGTACAAAAC
CTTGTGATGCCCCGGGGCGCTCAATTTTTGTATTGTTTTTTTAGATCGCC
CCTCTACCTTTGAGAATGCCCCGGGGCAATCTTTGTTCGCTCATATTTTC
CTGTCCCCTCGTGTGGGAGGGAGTCACGGAACTGCTATTTTTGTGTTCCA
GCGGCATGCTGTTTTGTTGTCTGTTGTTGTTGGAGGCGATGCTACGGGCG
GTGGTGTTACCGTTCAGAGTTGCCAACAGGTGAGACGGCTGAAAGCCAAC
ACCTGGAGCTTCTGGCGGATCTCGTAGGAGGAACGCCGTGATGGCCCGGT
GACGCGAGTGAGGAGGAACGAAGGCGTGGGATACACTCGTTTTGCCGAAC
CTTTTTTTCTCGGCGGGGGCGTCGGCGGGGGTGTCAACCCCCGGTGGCGA
AGGGTGCGAGCTTCCCCAATCGTTCGTCCTCTGTCTCTAACGTGCAATCC
TCATCCGTCTCGTTGGTGTGCGCTTCCTCGTTGTCCGACATCGTTAGCGT
CCGCAAGTTTATTTTTCGTGTACCTTTTCTTGGGTATAAGTTAGCCTGTG
ACCATGGGAATTGACCGCATCAAGTGTTCGATTAGTACGGACATTGAGAG
GTAATGGATGGAGAGATCGGAACGGTTTTTAATGTGAAGACGAC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig6240:8216..10409-

>mRNA_L-elsbetiae_contig6240.14842.1 ID=mRNA_L-elsbetiae_contig6240.14842.1|Name=mRNA_L-elsbetiae_contig6240.14842.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1038bp|location=Sequence derived from alignment at L-elsbetiae_contig6240:8216..10409- (Laminarionema elsbetiae ELsaHSoW15)
ATGCGGGTGGTGGAGGTCACGGATCTGTTCCGGACAACGAACGGGCTCAA
ATGCACGCTCGCGGAGGCGTACGCTTGCTGCTTCGACAGGGTGGAGAAGA
TGCGGGTGGTGGAGGTCACGGATCTGTTCCGGACAACGAACGGGCTCAAA
TGCACGCTCGCGGAGGCGTACGCTTGCTGCTTCGACAGGGTGGAGAAGGG
CTTGCACAACGCCGCCGTCGATGCTCGCATGACCATGGAGCTCCACAACT
TATGGAGGCGCGCGGGGCAGCCAGAGCAGCCGTTTGGTATCCCGCTCTCG
TTTTACGTCGTGAACTTCCACTCCTTCAAGCCCAGCAACAGCCGCCACGC
GACGCTTTGGGGCTTGCTCCGCCCAGATGGGATCGCCGGAGGGGGCGGGG
CCATCGAGAAGGATAGCGGGAGCAACACCTACAAGGCTTGCACAACGCCG
CCGTCGATGCTCGCATGACCATGGAGCTCCACAACTTATGGAGGCGCGCG
GGGCAGCCAGAGCAGCCGTTTGGTATCCCGCTCTCGTTTTACGTCGTGAA
CTTCCACTCCTTCAAGCCCAGCAACAGCCGCCACGCGACGCTTTGGGGCT
TGCTCCGCCCAGATGGGATCGCCGGAGGGGGCGGGGCCATCGAGAAGGAT
AGCGGGAGCAACACCTACAAGCTGTCGTTCCGAAATAATCGAGACCGAGA
CACCTACCTGTTCTGCCTGGAGCGCAAGATGTCATCGGCCGGCCTGAAGT
GGCAGGGGGGTCGGCAGTTCGTCCCCGGCAAGAAGGGGGCGGGGGATGGC
TACCAGCTCTCCTGCGGGAAGTTCAAGATGCACGTGCTTGAGCACGAGCG
CTGAGCTGTCGTTCCGAAATAATCGAGACCGAGACACCTACCTGTTCTGC
CTGGAGCGCAAGATGTCATCGGCCGGCCTGAAGTGGCAGGGGGGTCGGCA
GTTCGTCCCCGGCAAGAAGGGGGCGGGGGATGGCTACCAGCTCTCCTGCG
GGAAGTTCAAGATGCACGTGCTTGAGCACGAGCGCTGA
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