mRNA_L-elsbetiae_contig6231.14831.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6231.14831.1
Unique NamemRNA_L-elsbetiae_contig6231.14831.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6231.14831.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6231contigL-elsbetiae_contig6231:6903..8561 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size324
Cds size321
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6231.14831.1prot_L-elsbetiae_contig6231.14831.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6231 6904..8561 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816684.6468801-CDS-L-elsbetiae_contig6231:6903..69491622816684.6468801-CDS-L-elsbetiae_contig6231:6903..6949Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6231 6904..6949 -
1691683738.5099394-CDS-L-elsbetiae_contig6231:6903..69491691683738.5099394-CDS-L-elsbetiae_contig6231:6903..6949Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6231 6904..6949 -
1622816684.6568794-CDS-L-elsbetiae_contig6231:7610..77941622816684.6568794-CDS-L-elsbetiae_contig6231:7610..7794Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6231 7611..7794 -
1691683738.5218887-CDS-L-elsbetiae_contig6231:7610..77941691683738.5218887-CDS-L-elsbetiae_contig6231:7610..7794Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6231 7611..7794 -
1622816684.6714048-CDS-L-elsbetiae_contig6231:8470..85611622816684.6714048-CDS-L-elsbetiae_contig6231:8470..8561Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6231 8471..8561 -
1691683738.5337362-CDS-L-elsbetiae_contig6231:8470..85611691683738.5337362-CDS-L-elsbetiae_contig6231:8470..8561Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6231 8471..8561 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6231.14831.1

>prot_L-elsbetiae_contig6231.14831.1 ID=prot_L-elsbetiae_contig6231.14831.1|Name=mRNA_L-elsbetiae_contig6231.14831.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=107bp
SGVGGRRRRDRRRWCCGGGRGRRLEAGMICASLNSNSSKSPHRHISFSHP
PLSRGTRRQAAASNCADSADTGQTQHLGRASRNIIDQHCYPRAESRSPNS
CAGAAAA
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mRNA from alignment at L-elsbetiae_contig6231:6903..8561-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6231.14831.1 ID=mRNA_L-elsbetiae_contig6231.14831.1|Name=mRNA_L-elsbetiae_contig6231.14831.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1659bp|location=Sequence derived from alignment at L-elsbetiae_contig6231:6903..8561- (Laminarionema elsbetiae ELsaHSoW15)
AGCGGGGTAGGAGGAAGACGAAGGCGGGATAGGAGGCGGTGGTGCTGTGG
GGGCGGGCGTGGGAGACGCTTGGAGGCTGGAATGATTTGCGGTAAGTGTT
TTAGTGACTCACGGGTTGCGTGCATAGTAGTAGTAATCGGACGGATGGCG
GTTATTACGTTATTATTCCCCCCCCACCCACCCACCCACCCACCCACCCA
TATTCTTGTTTGAGTTGTTTTGACCCCGTATGTAGTCTGTGCCTCTAAAG
TAACGTCAGTTGATAGCAGTGGTGGTATTTTCAGCGAGTCCAAGTCACGG
GCATGCAGTGGCGGGGTTGTGGTTGTGTTGTTCGCCGAGGCGTTGCAATG
GCACGGATGTGTGTTTGTTCTTCGTGATTGTGGTGTGTGGGGCTTCTCTC
TCTCTCTCTCTCTCTCTCTCTCTCTCTCTTGCTGGCTCTCATTCTCTCTC
ACTCTCTCTTATTATCTCTCTCTGTCTCTCGCTCTCTCGTTCTCTCGTTT
TTTCTCTCTCTCTCTCTCTCTCTCTCTCTATCTATCTCTCTCGTTCCCTC
TCTCGCCCTCTCTCATTCTCTCTCTCTCGCTATCTCTCTCGTATCTCTCT
CTCTCTCTCTCTCTCTCTCCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCC
CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT
CTCTCTCTCTCTCTCTCTTATTTTTCGGCATCTGCACGCCTGCGGTCCCG
GCGATGGGTTTGCGCAGCCTCTCTGAACAGCAACTCGAGCAAGAGCCCGC
ACCGCCACATCTCTTTCTCCCACCCTCCACTCTCGCGTGGGACACGACGT
CAGGCAGCAGCAAGCAACTGCGCCGACAGCGCGGACACGGGTCAAACGCA
ACACCTTGGGCGGGCTTCACGAAACATAATCGATCAACATTGTTACCCCC
GGTAAGAGGCCTAGTCTATGCCACGGCCAGCAGCAGTACACATCGCTTTC
TGTTACTGGCATTGACACGTGGTTTTTTTGCTTCTCCAATCGGGTCCGTT
TTATTCGTTTTATTTTTTCAGTGTAATAAACCCTTTTTAGATATAAATAG
GGTAAGTTATCGTGCGACCGACCACGGGAATCGACTGCGTCAGCGCTGGA
GTAGTACGGACTCATGGAGGTAGGTGTACTGGATAGAGAGAGATCGGAAC
GGTTTTTAATGTGAAGACAACAACAACAACAACGGCAAAAGTAGAAGCAA
CAACAACAACAACAACAGCAACAATCACAACTGCAACAACCACCACAACA
ACAGTAACGAAAACGGCAACAGTAGAAGCAACAACAACAACCACAACAAT
AACAACAACAGCAGCAGCAGCAACAGACACAACTACAACAAAACCACAAA
CAACAGCAAACTGGGCGTATTTTTGGTTTTTCCGGTAGGGGCACGGATAA
CTTCAGGTTCTGGCGCCGGACGGGCCCCTGCTTTTCCGAGCGCCGTCCCC
CTCCGGTCGCCCTGGATAGGGTTGCCGCGTTGGCTGTGTTTTTCTTTGCC
ACGGCGCACGAGCTCGGCCTCTGGAAGACCCCGCCGCTTCCGCCGCCTTC
GCTCCCCGCCAGGGCCGAGAGCCGTTCCCCCAACTCTTGCGCAGGAGCAG
CAGCAGCAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig6231:6903..8561-

>mRNA_L-elsbetiae_contig6231.14831.1 ID=mRNA_L-elsbetiae_contig6231.14831.1|Name=mRNA_L-elsbetiae_contig6231.14831.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=642bp|location=Sequence derived from alignment at L-elsbetiae_contig6231:6903..8561- (Laminarionema elsbetiae ELsaHSoW15)
AGCGGGGTAGGAGGAAGACGAAGGCGGGATAGGAGGCGGTGGTGCTGTGG
GGGCGGGCGTGGGAGACGCTTGGAGGCTGGAATGATTTGCGAGCGGGGTA
GGAGGAAGACGAAGGCGGGATAGGAGGCGGTGGTGCTGTGGGGGCGGGCG
TGGGAGACGCTTGGAGGCTGGAATGATTTGCGCCTCTCTGAACAGCAACT
CGAGCAAGAGCCCGCACCGCCACATCTCTTTCTCCCACCCTCCACTCTCG
CGTGGGACACGACGTCAGGCAGCAGCAAGCAACTGCGCCGACAGCGCGGA
CACGGGTCAAACGCAACACCTTGGGCGGGCTTCACGAAACATAATCGATC
AACATTGTTACCCCCGCCTCTCTGAACAGCAACTCGAGCAAGAGCCCGCA
CCGCCACATCTCTTTCTCCCACCCTCCACTCTCGCGTGGGACACGACGTC
AGGCAGCAGCAAGCAACTGCGCCGACAGCGCGGACACGGGTCAAACGCAA
CACCTTGGGCGGGCTTCACGAAACATAATCGATCAACATTGTTACCCCCG
GGCCGAGAGCCGTTCCCCCAACTCTTGCGCAGGAGCAGCAGCAGCAGGCC
GAGAGCCGTTCCCCCAACTCTTGCGCAGGAGCAGCAGCAGCA
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