mRNA_L-elsbetiae_contig6231.14830.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6231.14830.1
Unique NamemRNA_L-elsbetiae_contig6231.14830.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6231.14830.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6231contigL-elsbetiae_contig6231:4654..6576 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size266
Cds size159
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6231.14830.1prot_L-elsbetiae_contig6231.14830.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6231 4759..6576 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816684.589747-UTR-L-elsbetiae_contig6231:4653..47581622816684.589747-UTR-L-elsbetiae_contig6231:4653..4758Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6231 4654..4758 -
1691683738.466718-UTR-L-elsbetiae_contig6231:4653..47581691683738.466718-UTR-L-elsbetiae_contig6231:4653..4758Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6231 4654..4758 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816684.6001904-CDS-L-elsbetiae_contig6231:4758..48151622816684.6001904-CDS-L-elsbetiae_contig6231:4758..4815Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6231 4759..4815 -
1691683738.4793243-CDS-L-elsbetiae_contig6231:4758..48151691683738.4793243-CDS-L-elsbetiae_contig6231:4758..4815Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6231 4759..4815 -
1622816684.6124084-CDS-L-elsbetiae_contig6231:6474..65761622816684.6124084-CDS-L-elsbetiae_contig6231:6474..6576Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6231 6475..6576 -
1691683738.4901137-CDS-L-elsbetiae_contig6231:6474..65761691683738.4901137-CDS-L-elsbetiae_contig6231:6474..6576Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6231 6475..6576 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6231.14830.1

>prot_L-elsbetiae_contig6231.14830.1 ID=prot_L-elsbetiae_contig6231.14830.1|Name=mRNA_L-elsbetiae_contig6231.14830.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=53bp
RAAEKRDARFPYKAGCRRLWGALGGWEYRRVVLTLGCPTGVTQWNTSCGA
CL*
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mRNA from alignment at L-elsbetiae_contig6231:4654..6576-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6231.14830.1 ID=mRNA_L-elsbetiae_contig6231.14830.1|Name=mRNA_L-elsbetiae_contig6231.14830.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1923bp|location=Sequence derived from alignment at L-elsbetiae_contig6231:4654..6576- (Laminarionema elsbetiae ELsaHSoW15)
CGCGCGGCCGAGAAGCGTGATGCAAGGTTTCCCTACAAAGCGGGTTGCCG
GCGCCTCTGGGGCGCGTTGGGAGGCTGGGAGTACCGACGGGTGGTGTTGA
CGGTGAGCTAGCTGGGTGTGGGGGGTGCGTTTTTGTTGGTGTAGACGTGG
GATAGTTGGTGTACGCTCTTTTCTCACCATCGACGAGGGAAAGGCACGGC
TGAACCCTTTTCGCGATAAAACAAGAATCTTAGGCAAGCACCGCAGAAGG
TGGCAGCGGGGGCCTCGGGGAGAGGAACCCTTCTGTATGGCCACGGTGCG
GTACTCTGGCAAGATGCCCTCGTGGCAAGATACCCTCGTGGCAAGATGCC
CTCGTGGCAAGGGGCCCATCGAGCACTGGAAATAATTCTGAAAAGTATAA
ATGTCATGAACGTGCTTTTCCTTCGAACGGCAGCGGTCGTTCAGTTGTTT
ATGTTTTGGAAGGGAGTCGGCAGGAGCAGGGGGGGCCGTTTCGTGGGCGC
GCGGAAGAGGGGGGGGGGGGGGGAAGGGCATCCCGCCGGTGTAGCTGATT
GGGGGAGGGAATACACGAAGCTCGATGTTCGTTTCTGCTGGCGGCTCCAC
GACAACACATCTATCCGTGATCTAGCCAGTGCGTGAGCAGCGAGTGAAGA
GAGAGTTAGTGAGTGAAAGAAAGAATCATTGAATGGAGTGCAGGCAACTG
GATGGGCGAACGAGAAAGCACCCGTGCGAGTTGCTTGGTGATGAACGTTA
AAAACATTCCCGATCTCGCTAGATCCAGTGAGCCCTTCACTCCCCTCTAC
ACGCTGTGTGAGGTGAAAAACGAGAGCGTGAGTGAACCGGTGACGAGTAA
ACGAGGCAGCGCATGGGTGCGGGATTGGACTATGAGTGCAATCGCCCGGG
AGTGTGTGAATTAGTGTGTAAGAGAGTGCATGAGTGACTTGAGGAGTAAC
ACACCGAACGAACGAACCGAAAATCCCAACCTACACTGAAACCCTCCTCT
TTTTGTTTTTTTAATACCTCGATCGTTTGAGGCATCTCACATTGAAACCC
CTCGCAGCACTCTTGAAAGTTAATCTGCGGCAAAAAACTTCGTAAAAATT
ATATACGAGCGAAAGAATGAGCGAACGAGAGAGAGAACCTGTGTGAGTGA
AATGGTGAATGTTTGACGAGTCGACGAGGGAGCGCGTGTGTCAGGAAGTG
GGCGATTGTGGAAATGGCTAGCGAGGCGAAGTGCATCAGAGCGTGAATGG
GCGAGTGTGAGTGGATCGGCAAGTGAGTGAAGGACAGCAGCAGCGGCGCA
TGAGTGAATGCCTGCGTATAACGGCCAAGTAAATGAGTAAGAGTGAGTTG
TGAGAGAAATTGGGATGGAAAATACTACACTAAGTGAGTCAATGAGTGAG
AGATAAACGCCTCTTTTCGTCGACCCTGCCAGCCTGTACTTCCCTTCCGC
CTCGACTATCTCCTTCGCCTTGTTTGGCCAAAATAAGAGATATCGGTGGG
GTTGAGTCCACTTTTCTAAGTTCAGTCAGTCCTGCCTCTCTGAGTTGGCC
TGTTCGGGGTTTCTCTCACACAACACACGGGGCCGTCCGCCTACTTAAAG
CATCCTCGATTATCTTTTCCCCAATATTTGTTCCCACCCTCTTCTCCCCC
CGCCTGATCCTCATCTCTGTACCGTCCGCGAGTTAAAAGTTGTTTTCTCC
CAATATTGGCTTATTCGTCGTCTACCCCACTGGCCCCCTTCCTCCGCTAT
GACTGCAACAGCTAGGTTGCCCAACCGGTGTCACACAGTGGAACACCTCC
TGCGGAGCCTGCCTGTGATGTTTTTTATCGCCAATTAACGGGCCCTGGTT
CTTCTGCCGAGGGGCTTGAGGAGTTTGCTGGGCCTGATGGGGGGAAAGGG
CGGAGGCGAGAGGGGTCGACGGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig6231:4654..6576-

>mRNA_L-elsbetiae_contig6231.14830.1 ID=mRNA_L-elsbetiae_contig6231.14830.1|Name=mRNA_L-elsbetiae_contig6231.14830.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=318bp|location=Sequence derived from alignment at L-elsbetiae_contig6231:4654..6576- (Laminarionema elsbetiae ELsaHSoW15)
CGCGCGGCCGAGAAGCGTGATGCAAGGTTTCCCTACAAAGCGGGTTGCCG
GCGCCTCTGGGGCGCGTTGGGAGGCTGGGAGTACCGACGGGTGGTGTTGA
CGCGCGCGGCCGAGAAGCGTGATGCAAGGTTTCCCTACAAAGCGGGTTGC
CGGCGCCTCTGGGGCGCGTTGGGAGGCTGGGAGTACCGACGGGTGGTGTT
GACGCTAGGTTGCCCAACCGGTGTCACACAGTGGAACACCTCCTGCGGAG
CCTGCCTGTGACTAGGTTGCCCAACCGGTGTCACACAGTGGAACACCTCC
TGCGGAGCCTGCCTGTGA
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